Wall clock time and date at job start Tue Mar 31 2020 18:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46491 * 120.00119 * 2 1 4 4 C 1.53007 * 109.46989 * 269.99698 * 3 2 1 5 5 C 1.50694 * 109.47280 * 179.97438 * 4 3 2 6 6 C 1.38257 * 120.00171 * 270.02305 * 5 4 3 7 7 C 1.38217 * 120.00124 * 179.97438 * 6 5 4 8 8 C 1.38258 * 119.99907 * 359.76573 * 7 6 5 9 9 C 1.38216 * 119.99766 * 0.46893 * 8 7 6 10 10 N 1.48026 * 119.99744 * 179.78745 * 9 8 7 11 11 O 1.21799 * 119.99956 * 179.72731 * 10 9 8 12 12 O 1.21802 * 120.00016 * 359.44228 * 10 9 8 13 13 C 1.38215 * 120.00134 * 89.99890 * 5 4 3 14 14 C 1.34777 * 119.99860 * 179.97438 * 2 1 3 15 15 O 1.21583 * 120.00402 * 179.97438 * 14 2 1 16 16 N 1.34778 * 120.00140 * 0.02562 * 14 2 1 17 17 C 1.46499 * 120.00083 * 179.97438 * 16 14 2 18 18 C 1.53005 * 109.47220 * 179.97438 * 17 16 14 19 19 C 1.52992 * 109.47340 * 180.02562 * 18 17 16 20 20 C 1.50704 * 109.47280 * 180.02562 * 19 18 17 21 21 H 1.08001 * 120.00034 * 359.97438 * 20 19 18 22 22 C 1.37879 * 119.99841 * 180.02562 * 20 19 18 23 23 N 1.31510 * 120.00063 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 119.99593 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47044 * 60.00073 * 24 22 20 26 26 H 1.48504 * 109.46731 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.46860 * 299.99533 * 24 22 20 28 28 H 1.08998 * 109.46884 * 90.00604 * 1 2 3 29 29 H 1.09003 * 109.46894 * 210.00589 * 1 2 3 30 30 H 1.08997 * 109.46607 * 329.99972 * 1 2 3 31 31 H 1.09008 * 109.47301 * 150.00058 * 3 2 1 32 32 H 1.09000 * 109.47545 * 29.99704 * 3 2 1 33 33 H 1.09000 * 109.47061 * 60.00035 * 4 3 2 34 34 H 1.09000 * 109.46981 * 300.00350 * 4 3 2 35 35 H 1.08001 * 120.00180 * 359.97438 * 6 5 4 36 36 H 1.07997 * 119.99804 * 179.97438 * 7 6 5 37 37 H 1.07996 * 120.00234 * 180.24572 * 8 7 6 38 38 H 1.08005 * 119.99743 * 0.02562 * 13 5 4 39 39 H 0.97001 * 120.00145 * 0.02562 * 16 14 2 40 40 H 1.08993 * 109.47220 * 300.00022 * 17 16 14 41 41 H 1.09002 * 109.46862 * 60.00897 * 17 16 14 42 42 H 1.08999 * 109.47330 * 300.00525 * 18 17 16 43 43 H 1.09000 * 109.46826 * 60.00029 * 18 17 16 44 44 H 1.08999 * 109.47088 * 300.00368 * 19 18 17 45 45 H 1.09000 * 109.47387 * 60.00066 * 19 18 17 46 46 H 0.97001 * 120.00123 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4526 1.7103 -1.4426 5 6 3.2056 3.0156 -1.4426 6 6 2.5138 4.2127 -1.4424 7 6 3.2044 5.4099 -1.4420 8 6 4.5870 5.4105 -1.4368 9 6 5.2785 4.2137 -1.4419 10 7 6.7588 4.2143 -1.4412 11 8 7.3682 3.1598 -1.4406 12 8 7.3674 5.2694 -1.4463 13 6 4.5877 3.0162 -1.4424 14 6 2.1389 -1.1672 0.0005 15 8 3.3547 -1.1673 0.0001 16 7 1.4650 -2.3344 0.0005 17 6 2.1975 -3.6032 0.0005 18 6 1.2032 -4.7661 0.0012 19 6 1.9681 -6.0911 0.0018 20 6 0.9888 -7.2366 0.0018 21 1 -0.0730 -7.0392 0.0018 22 6 1.4484 -8.5365 0.0029 23 7 2.7414 -8.7768 0.0034 24 14 0.2345 -9.9563 0.0036 25 1 -0.6189 -9.8785 -1.2092 26 1 0.9770 -11.2424 0.0041 27 1 -0.6195 -9.8767 1.2159 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3632 0.8900 0.5138 31 1 3.1500 1.1383 0.5139 32 1 1.6085 2.0284 0.5138 33 1 1.5002 1.8406 -1.9564 34 1 3.0416 0.9505 -1.9563 35 1 1.4338 4.2123 -1.4426 36 1 2.6641 6.3450 -1.4422 37 1 5.1267 6.3459 -1.4324 38 1 5.1281 2.0810 -1.4426 39 1 0.4950 -2.3345 -0.0002 40 1 2.8241 -3.6609 -0.8894 41 1 2.8240 -3.6609 0.8906 42 1 0.5768 -4.7082 0.8913 43 1 0.5763 -4.7085 -0.8886 44 1 2.5948 -6.1493 -0.8881 45 1 2.5949 -6.1484 0.8918 46 1 3.0648 -9.6913 0.0038 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282577190.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:24 Heat of formation + Delta-G solvation = -39.706793 kcal Electronic energy + Delta-G solvation = -27261.113089 eV Core-core repulsion = 23152.937539 eV Total energy + Delta-G solvation = -4108.175550 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.30755 -41.34113 -40.54657 -37.75539 -37.44526 -36.67685 -35.32152 -34.49690 -32.95845 -32.77865 -30.23011 -28.54662 -27.73247 -27.39586 -25.55336 -24.27455 -23.62814 -22.51024 -22.31024 -20.83385 -19.96109 -19.74800 -19.06330 -18.66498 -18.47692 -17.55503 -17.46501 -16.97919 -16.65515 -16.50357 -15.98021 -15.65867 -15.36596 -15.12165 -14.65115 -14.37493 -14.21591 -14.17016 -14.05661 -13.75031 -13.46895 -13.28408 -13.21366 -13.13819 -12.81669 -12.71139 -12.53716 -12.43630 -12.39470 -12.37799 -12.35303 -11.92212 -11.67231 -11.60998 -11.29788 -11.13181 -10.58293 -10.54696 -10.35898 -10.17048 -9.50169 -8.18882 -6.30849 -1.29406 -0.07351 0.27182 0.35374 1.41817 1.45194 1.52981 1.62460 2.09149 2.30027 2.42193 2.98514 3.14689 3.33087 3.47084 3.74236 3.90178 3.95681 4.00605 4.12899 4.16702 4.21772 4.24997 4.31533 4.51228 4.54649 4.60350 4.70136 4.71923 4.85512 4.94240 4.94651 4.98237 5.01043 5.06532 5.10306 5.16129 5.25925 5.46042 5.52911 5.53852 5.56811 5.70429 5.83953 5.88376 6.22143 6.37869 6.86164 6.96187 7.38757 7.53717 8.93034 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.019987 B = 0.001694 C = 0.001579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.589304 B =16521.548617 C =17724.932636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.629 5.629 3 C 0.137 3.863 4 C -0.091 4.091 5 C -0.076 4.076 6 C -0.041 4.041 7 C -0.100 4.100 8 C -0.061 4.061 9 C -0.065 4.065 10 N 0.029 4.971 11 O -0.222 6.222 12 O -0.154 6.154 13 C -0.070 4.070 14 C 0.692 3.308 15 O -0.640 6.640 16 N -0.730 5.730 17 C 0.149 3.851 18 C -0.099 4.099 19 C 0.023 3.977 20 C -0.541 4.541 21 H 0.069 0.931 22 C -0.005 4.005 23 N -0.936 5.936 24 Si 0.969 3.031 25 H -0.265 1.265 26 H -0.288 1.288 27 H -0.265 1.265 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.107 0.893 31 H 0.050 0.950 32 H 0.121 0.879 33 H 0.116 0.884 34 H 0.050 0.950 35 H 0.189 0.811 36 H 0.192 0.808 37 H 0.165 0.835 38 H 0.125 0.875 39 H 0.411 0.589 40 H 0.044 0.956 41 H 0.043 0.957 42 H 0.069 0.931 43 H 0.069 0.931 44 H -0.009 1.009 45 H -0.009 1.009 46 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.169 35.170 -2.633 36.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.365 5.365 3 C 0.014 3.986 4 C -0.129 4.129 5 C -0.077 4.077 6 C -0.059 4.059 7 C -0.118 4.118 8 C -0.080 4.080 9 C -0.148 4.148 10 N 0.542 4.458 11 O -0.424 6.424 12 O -0.376 6.376 13 C -0.090 4.090 14 C 0.393 3.607 15 O -0.522 6.522 16 N -0.387 5.387 17 C 0.024 3.976 18 C -0.137 4.137 19 C -0.015 4.015 20 C -0.579 4.579 21 H 0.087 0.913 22 C -0.203 4.203 23 N -0.576 5.576 24 Si 0.793 3.207 25 H -0.189 1.189 26 H -0.213 1.213 27 H -0.189 1.189 28 H 0.091 0.909 29 H 0.088 0.912 30 H 0.125 0.875 31 H 0.069 0.931 32 H 0.139 0.861 33 H 0.134 0.866 34 H 0.069 0.931 35 H 0.206 0.794 36 H 0.209 0.791 37 H 0.182 0.818 38 H 0.143 0.857 39 H 0.250 0.750 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.009 0.991 45 H 0.009 0.991 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.881 34.919 -2.613 36.669 hybrid contribution 0.820 -1.526 -0.029 1.732 sum -10.061 33.393 -2.642 34.976 Atomic orbital electron populations 1.22094 0.76700 1.04913 1.03481 1.47079 1.08109 1.03648 1.77705 1.21426 0.97411 0.83905 0.95865 1.20995 1.01291 0.92274 0.98353 1.19861 0.90687 0.97236 0.99937 1.22084 1.03356 0.89932 0.90486 1.21748 0.91111 1.01138 0.97779 1.21475 0.96362 0.96096 0.94037 1.21363 0.77063 0.98556 1.17862 1.44137 1.05183 0.99891 0.96606 1.94597 1.70313 1.21030 1.56489 1.94461 1.70335 1.20546 1.52267 1.21045 0.95806 0.96454 0.95648 1.16241 0.84932 0.81663 0.77842 1.90904 1.14123 1.87085 1.60058 1.45178 1.10522 1.03955 1.79023 1.21061 0.94628 0.81712 1.00234 1.21574 0.97415 0.92497 1.02173 1.18945 0.95204 0.92353 0.94998 1.21652 0.93904 0.91788 1.50555 0.91315 1.26060 0.97045 1.02380 0.94796 1.70114 1.14867 1.21004 1.51604 0.85445 0.78551 0.77387 0.79309 1.18934 1.21317 1.18927 0.90882 0.91186 0.87477 0.93113 0.86060 0.86617 0.93134 0.79375 0.79095 0.81768 0.85658 0.75035 0.93767 0.93834 0.91259 0.91217 0.99086 0.99092 0.92848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.53 10.25 127.77 1.31 1.84 16 2 N -0.63 -11.09 2.87 -864.90 -2.48 -13.58 16 3 C 0.14 1.94 5.43 86.38 0.47 2.40 16 4 C -0.09 -1.09 5.67 29.85 0.17 -0.92 16 5 C -0.08 -0.82 5.13 -19.87 -0.10 -0.92 16 6 C -0.04 -0.11 9.70 22.27 0.22 0.11 16 7 C -0.10 -0.24 10.05 22.27 0.22 -0.02 16 8 C -0.06 -0.61 9.56 22.27 0.21 -0.40 16 9 C -0.07 -1.24 6.85 36.37 0.25 -0.99 16 10 N 0.03 0.76 4.45 -46.46 -0.21 0.56 16 11 O -0.22 -7.04 18.45 18.89 0.35 -6.69 16 12 O -0.15 -3.96 18.45 18.88 0.35 -3.62 16 13 C -0.07 -1.31 9.21 22.27 0.21 -1.10 16 14 C 0.69 20.31 8.28 179.05 1.48 21.79 16 15 O -0.64 -25.60 15.92 -3.98 -0.06 -25.66 16 16 N -0.73 -20.20 5.42 -478.54 -2.59 -22.79 16 17 C 0.15 5.38 5.67 86.38 0.49 5.87 16 18 C -0.10 -3.77 5.27 30.59 0.16 -3.61 16 19 C 0.02 1.19 4.97 29.85 0.15 1.34 16 20 C -0.54 -30.08 9.11 25.60 0.23 -29.84 16 21 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 22 C -0.01 -0.30 5.46 84.66 0.46 0.16 16 23 N -0.94 -57.55 13.29 21.45 0.28 -57.27 16 24 Si 0.97 43.60 29.54 68.60 2.03 45.62 16 25 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 26 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 27 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 28 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 29 H 0.07 0.57 6.36 -2.39 -0.02 0.56 16 30 H 0.11 0.15 7.89 -2.39 -0.02 0.13 16 31 H 0.05 1.11 7.42 -2.38 -0.02 1.09 16 32 H 0.12 0.66 7.89 -2.39 -0.02 0.64 16 33 H 0.12 0.63 8.08 -2.39 -0.02 0.61 16 34 H 0.05 1.01 8.09 -2.39 -0.02 0.99 16 35 H 0.19 -1.09 8.06 -2.91 -0.02 -1.11 16 36 H 0.19 -1.06 8.06 -2.91 -0.02 -1.09 16 37 H 0.16 1.22 7.61 -2.91 -0.02 1.19 16 38 H 0.13 3.02 7.61 -2.91 -0.02 3.00 16 39 H 0.41 8.32 6.20 -92.71 -0.58 7.75 16 40 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 43 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 44 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 45 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 46 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -85.70 396.65 4.00 -81.70 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: 0.42 Total: 6.01 kcal Atomic # 6 Polarization: -10.22 SS G_CDS: 5.93 Total: -4.29 kcal Atomic # 7 Polarization: -88.07 SS G_CDS: -5.00 Total: -93.08 kcal Atomic # 8 Polarization: -36.61 SS G_CDS: 0.63 Total: -35.98 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.62 kcal Total: -85.70 4.00 -81.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282577190.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.992 kcal (2) G-P(sol) polarization free energy of solvation -85.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds