Wall clock time and date at job start Tue Mar 31 2020 18:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34779 * 119.99761 * 2 1 4 4 O 1.21591 * 119.99928 * 359.97438 * 3 2 1 5 5 N 1.34776 * 120.00041 * 180.02562 * 3 2 1 6 6 C 1.46500 * 119.99976 * 179.97438 * 5 3 2 7 7 C 1.53000 * 109.47205 * 179.97438 * 6 5 3 8 8 C 1.50699 * 109.47103 * 180.02562 * 7 6 5 9 9 O 1.21288 * 119.99873 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99874 * 180.02562 * 8 7 6 11 11 C 1.39917 * 120.00075 * 185.27630 * 10 8 7 12 12 C 1.38933 * 120.04163 * 213.30012 * 11 10 8 13 13 C 1.38126 * 120.03704 * 180.02562 * 12 11 10 14 14 C 1.38215 * 120.12639 * 359.68018 * 13 12 11 15 15 C 1.38762 * 120.08446 * 0.59353 * 14 13 12 16 16 O 1.35893 * 120.02114 * 179.69880 * 15 14 13 17 17 C 1.42897 * 117.00074 * 359.73109 * 16 15 14 18 18 C 1.53004 * 109.47092 * 179.97438 * 17 16 15 19 19 C 1.50703 * 109.46777 * 180.02562 * 18 17 16 20 20 H 1.08001 * 120.00434 * 359.97438 * 19 18 17 21 21 C 1.37878 * 119.99743 * 179.97438 * 19 18 17 22 22 N 1.31517 * 120.00189 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 120.00102 * 179.97438 * 21 19 18 24 24 H 1.48508 * 109.46574 * 60.00379 * 23 21 19 25 25 H 1.48493 * 109.47134 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47056 * 300.00353 * 23 21 19 27 27 C 1.38631 * 119.95633 * 359.42885 * 15 14 13 28 28 H 1.09007 * 109.47039 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47674 * 299.99745 * 1 2 3 30 30 H 1.09000 * 109.47705 * 60.00465 * 1 2 3 31 31 H 0.96997 * 120.00365 * 179.97438 * 2 1 3 32 32 H 0.96997 * 120.00086 * 359.97438 * 5 3 2 33 33 H 1.09003 * 109.46689 * 60.00167 * 6 5 3 34 34 H 1.08997 * 109.47319 * 300.00338 * 6 5 3 35 35 H 1.08997 * 109.46799 * 60.00186 * 7 6 5 36 36 H 1.09003 * 109.47059 * 300.00452 * 7 6 5 37 37 H 0.96997 * 120.00199 * 5.26862 * 10 8 7 38 38 H 1.08000 * 119.98133 * 0.02562 * 12 11 10 39 39 H 1.08000 * 119.93323 * 179.97438 * 13 12 11 40 40 H 1.08003 * 119.95600 * 180.30031 * 14 13 12 41 41 H 1.09001 * 109.46881 * 299.99974 * 17 16 15 42 42 H 1.08998 * 109.47261 * 59.99940 * 17 16 15 43 43 H 1.09000 * 109.46979 * 299.99300 * 18 17 16 44 44 H 1.08998 * 109.47098 * 59.99863 * 18 17 16 45 45 H 0.96994 * 120.00572 * 179.97438 * 22 21 19 46 46 H 1.07997 * 120.05730 * 180.25295 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5308 2.2202 -0.0005 5 7 3.4866 1.1673 -0.0005 6 6 4.2190 2.4361 -0.0011 7 6 5.7233 2.1566 -0.0010 8 6 6.4767 3.4618 -0.0009 9 8 5.8701 4.5121 -0.0014 10 7 7.8244 3.4618 -0.0013 11 6 8.5240 4.6684 0.1101 12 6 9.7421 4.8286 -0.5385 13 6 10.4329 6.0196 -0.4280 14 6 9.9117 7.0569 0.3222 15 6 8.6982 6.9005 0.9769 16 8 8.1899 7.9190 1.7191 17 6 8.9608 9.1203 1.7863 18 6 8.2334 10.1448 2.6595 19 6 9.0462 11.4119 2.7298 20 1 9.9875 11.4797 2.2047 21 6 8.5880 12.4849 3.4646 22 7 7.4420 12.4023 4.1045 23 14 9.5957 14.0553 3.5525 24 1 9.7732 14.6066 2.1849 25 1 8.8892 15.0501 4.3988 26 1 10.9255 13.7579 4.1427 27 6 8.0021 5.7065 0.8687 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 1.9500 -0.8400 0.0004 32 1 3.9716 0.3273 -0.0005 33 1 3.9559 3.0078 0.8889 34 1 3.9553 3.0075 -0.8910 35 1 5.9866 1.5847 -0.8907 36 1 5.9866 1.5854 0.8893 37 1 8.3094 2.6254 -0.0788 38 1 10.1491 4.0215 -1.1295 39 1 11.3798 6.1422 -0.9326 40 1 10.4518 7.9886 0.4028 41 1 9.9371 8.9017 2.2187 42 1 9.0903 9.5255 0.7828 43 1 7.2573 10.3634 2.2266 44 1 8.1035 9.7398 3.6631 45 1 7.1198 13.1569 4.6218 46 1 7.0556 5.5844 1.3742 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293420403.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:33 Heat of formation + Delta-G solvation = -82.499031 kcal Electronic energy + Delta-G solvation = -26990.731382 eV Core-core repulsion = 22880.700221 eV Total energy + Delta-G solvation = -4110.031160 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.81315 -40.20092 -39.29787 -37.27503 -35.71852 -34.82883 -34.64884 -33.31873 -31.64366 -30.82367 -29.49178 -28.98088 -27.03295 -25.07216 -24.30928 -22.75807 -22.05665 -21.37661 -20.92868 -20.19386 -19.09745 -18.30018 -17.48772 -16.56188 -16.53181 -16.32502 -16.00478 -15.72404 -15.44826 -15.27179 -15.19757 -14.76553 -14.58743 -14.45177 -14.16038 -13.91753 -13.41665 -13.19789 -12.96581 -12.71750 -12.63489 -12.34169 -12.28552 -11.94215 -11.78175 -11.67533 -11.41415 -10.88994 -10.84402 -10.61153 -10.54083 -10.36969 -9.97854 -9.80112 -9.68943 -9.61685 -9.27111 -9.24285 -8.41478 -8.26613 -7.82359 -6.05865 -4.10869 1.32237 1.63221 2.19821 2.37852 2.82675 2.88422 3.31591 3.35827 3.37648 3.78480 3.91715 3.96450 4.20342 4.43035 4.52080 4.56386 4.77628 4.90173 4.99079 5.15042 5.16845 5.30111 5.36659 5.40612 5.44402 5.49218 5.64156 5.67455 5.86742 6.01439 6.04422 6.05422 6.07714 6.24831 6.34455 6.45793 6.52566 6.60922 6.76537 6.96676 7.14249 7.55116 7.59057 7.69330 7.84855 7.86081 8.10364 8.24795 8.27868 8.94535 9.53112 11.05628 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012746 B = 0.001827 C = 0.001610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2196.184506 B =15324.506009 C =17385.828428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.752 5.752 3 C 0.700 3.300 4 O -0.582 6.582 5 N -0.748 5.748 6 C 0.150 3.850 7 C -0.150 4.150 8 C 0.512 3.488 9 O -0.502 6.502 10 N -0.672 5.672 11 C 0.176 3.824 12 C -0.196 4.196 13 C -0.061 4.061 14 C -0.225 4.225 15 C 0.165 3.835 16 O -0.312 6.312 17 C 0.065 3.935 18 C 0.025 3.975 19 C -0.528 4.528 20 H 0.058 0.942 21 C 0.061 3.939 22 N -0.889 5.889 23 Si 0.900 3.100 24 H -0.276 1.276 25 H -0.286 1.286 26 H -0.276 1.276 27 C -0.164 4.164 28 H 0.075 0.925 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.396 0.604 32 H 0.395 0.605 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.102 0.898 36 H 0.104 0.896 37 H 0.410 0.590 38 H 0.121 0.879 39 H 0.125 0.875 40 H 0.132 0.868 41 H 0.051 0.949 42 H 0.051 0.949 43 H 0.029 0.971 44 H 0.028 0.972 45 H 0.264 0.736 46 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.131 -32.861 -10.823 34.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.408 5.408 3 C 0.400 3.600 4 O -0.458 6.458 5 N -0.404 5.404 6 C 0.026 3.974 7 C -0.190 4.190 8 C 0.298 3.702 9 O -0.374 6.374 10 N -0.318 5.318 11 C 0.083 3.917 12 C -0.217 4.217 13 C -0.080 4.080 14 C -0.245 4.245 15 C 0.117 3.883 16 O -0.224 6.224 17 C -0.009 4.009 18 C -0.013 4.013 19 C -0.566 4.566 20 H 0.076 0.924 21 C -0.142 4.142 22 N -0.527 5.527 23 Si 0.727 3.273 24 H -0.201 1.201 25 H -0.211 1.211 26 H -0.201 1.201 27 C -0.184 4.184 28 H 0.093 0.907 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.229 0.771 32 H 0.228 0.772 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.121 0.879 36 H 0.123 0.877 37 H 0.246 0.754 38 H 0.139 0.861 39 H 0.143 0.857 40 H 0.150 0.850 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.047 0.953 44 H 0.046 0.954 45 H 0.074 0.926 46 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -3.550 -30.987 -10.567 32.931 hybrid contribution 1.503 -0.333 -0.058 1.540 sum -2.047 -31.320 -10.625 33.136 Atomic orbital electron populations 1.21406 0.78000 1.01946 1.02503 1.44908 1.07856 1.07008 1.81043 1.15942 0.81667 0.84370 0.78046 1.90996 1.67687 1.30257 1.56868 1.45035 1.04838 1.09586 1.80936 1.20906 0.87554 0.84358 1.04612 1.21783 0.95665 0.96216 1.05373 1.20486 0.81986 0.91424 0.76266 1.90861 1.67529 1.33141 1.45908 1.43430 1.06404 1.08513 1.73409 1.17260 0.92272 0.86224 0.95993 1.20603 0.96761 0.99433 1.04879 1.20665 0.98765 0.91940 0.96633 1.21399 0.97641 1.01431 1.03989 1.18961 0.91152 0.88483 0.89711 1.86198 1.48757 1.22940 1.64528 1.23358 0.94909 0.81750 1.00889 1.19131 0.96488 0.90904 0.94734 1.20933 1.06288 0.97794 1.31554 0.92402 1.24995 0.95113 0.98874 0.95209 1.69969 1.19586 1.31629 1.31487 0.86541 0.80081 0.82562 0.78132 1.20104 1.21133 1.20118 1.20270 1.02705 0.91902 1.03564 0.90669 0.92254 0.92293 0.77081 0.77199 0.90208 0.90328 0.87928 0.87737 0.75415 0.86117 0.85687 0.85009 0.93043 0.93026 0.95301 0.95375 0.92648 0.84233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.57 10.70 59.84 0.64 1.21 16 2 N -0.75 -4.38 5.72 -72.07 -0.41 -4.79 16 3 C 0.70 6.89 8.57 -86.92 -0.74 6.14 16 4 O -0.58 -8.95 16.34 5.29 0.09 -8.87 16 5 N -0.75 -4.90 5.56 -65.22 -0.36 -5.27 16 6 C 0.15 1.31 4.96 -4.04 -0.02 1.29 16 7 C -0.15 -0.79 5.82 -27.88 -0.16 -0.95 16 8 C 0.51 5.24 7.57 -10.99 -0.08 5.16 16 9 O -0.50 -7.90 13.67 5.55 0.08 -7.82 16 10 N -0.67 -6.02 5.34 -9.88 -0.05 -6.07 16 11 C 0.18 2.29 6.28 -83.72 -0.53 1.77 16 12 C -0.20 -2.24 9.96 -39.37 -0.39 -2.63 16 13 C -0.06 -0.77 10.03 -39.63 -0.40 -1.17 16 14 C -0.23 -3.56 9.04 -39.40 -0.36 -3.92 16 15 C 0.16 3.06 6.68 -39.24 -0.26 2.80 16 16 O -0.31 -6.83 10.13 -19.40 -0.20 -7.03 16 17 C 0.06 1.44 4.68 37.16 0.17 1.62 16 18 C 0.02 0.67 5.34 -27.88 -0.15 0.52 16 19 C -0.53 -15.02 9.11 -34.44 -0.31 -15.33 16 20 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 21 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 22 N -0.89 -27.03 13.29 55.43 0.74 -26.29 16 23 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 27 C -0.16 -2.77 8.59 -39.25 -0.34 -3.11 16 28 H 0.07 0.15 8.14 -51.93 -0.42 -0.27 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.40 0.84 8.84 -40.82 -0.36 0.48 16 32 H 0.39 0.96 8.49 -40.82 -0.35 0.62 16 33 H 0.08 0.91 8.10 -51.93 -0.42 0.49 16 34 H 0.08 0.87 8.10 -51.93 -0.42 0.45 16 35 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 36 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.41 1.86 8.82 -40.82 -0.36 1.50 16 38 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 39 H 0.13 1.21 8.06 -52.49 -0.42 0.78 16 40 H 0.13 2.03 6.29 -52.48 -0.33 1.70 16 41 H 0.05 1.07 7.67 -51.93 -0.40 0.67 16 42 H 0.05 1.09 7.65 -51.93 -0.40 0.69 16 43 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 46 H 0.14 2.57 6.41 -52.49 -0.34 2.23 16 LS Contribution 393.23 15.07 5.93 5.93 Total: -1.00 -39.48 393.23 -8.96 -48.45 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -6.72 Total: 0.12 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: -3.03 Total: -4.96 kcal Atomic # 7 Polarization: -42.33 SS G_CDS: -0.09 Total: -42.42 kcal Atomic # 8 Polarization: -23.68 SS G_CDS: -0.03 Total: -23.72 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -39.48 -8.96 -48.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293420403.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.051 kcal (2) G-P(sol) polarization free energy of solvation -39.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds