Wall clock time and date at job start Tue Mar 31 2020 18:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34779 * 119.99761 * 2 1 4 4 O 1.21591 * 119.99928 * 359.97438 * 3 2 1 5 5 N 1.34776 * 120.00041 * 180.02562 * 3 2 1 6 6 C 1.46500 * 119.99976 * 179.97438 * 5 3 2 7 7 C 1.53000 * 109.47205 * 179.97438 * 6 5 3 8 8 C 1.50699 * 109.47103 * 180.02562 * 7 6 5 9 9 O 1.21288 * 119.99873 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99874 * 180.02562 * 8 7 6 11 11 C 1.39917 * 120.00075 * 185.27630 * 10 8 7 12 12 C 1.38933 * 120.04163 * 213.30012 * 11 10 8 13 13 C 1.38126 * 120.03704 * 180.02562 * 12 11 10 14 14 C 1.38215 * 120.12639 * 359.68018 * 13 12 11 15 15 C 1.38762 * 120.08446 * 0.59353 * 14 13 12 16 16 O 1.35893 * 120.02114 * 179.69880 * 15 14 13 17 17 C 1.42897 * 117.00074 * 359.73109 * 16 15 14 18 18 C 1.53004 * 109.47092 * 179.97438 * 17 16 15 19 19 C 1.50703 * 109.46777 * 180.02562 * 18 17 16 20 20 H 1.08001 * 120.00434 * 359.97438 * 19 18 17 21 21 C 1.37878 * 119.99743 * 179.97438 * 19 18 17 22 22 N 1.31517 * 120.00189 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 120.00102 * 179.97438 * 21 19 18 24 24 H 1.48508 * 109.46574 * 60.00379 * 23 21 19 25 25 H 1.48493 * 109.47134 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47056 * 300.00353 * 23 21 19 27 27 C 1.38631 * 119.95633 * 359.42885 * 15 14 13 28 28 H 1.09007 * 109.47039 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47674 * 299.99745 * 1 2 3 30 30 H 1.09000 * 109.47705 * 60.00465 * 1 2 3 31 31 H 0.96997 * 120.00365 * 179.97438 * 2 1 3 32 32 H 0.96997 * 120.00086 * 359.97438 * 5 3 2 33 33 H 1.09003 * 109.46689 * 60.00167 * 6 5 3 34 34 H 1.08997 * 109.47319 * 300.00338 * 6 5 3 35 35 H 1.08997 * 109.46799 * 60.00186 * 7 6 5 36 36 H 1.09003 * 109.47059 * 300.00452 * 7 6 5 37 37 H 0.96997 * 120.00199 * 5.26862 * 10 8 7 38 38 H 1.08000 * 119.98133 * 0.02562 * 12 11 10 39 39 H 1.08000 * 119.93323 * 179.97438 * 13 12 11 40 40 H 1.08003 * 119.95600 * 180.30031 * 14 13 12 41 41 H 1.09001 * 109.46881 * 299.99974 * 17 16 15 42 42 H 1.08998 * 109.47261 * 59.99940 * 17 16 15 43 43 H 1.09000 * 109.46979 * 299.99300 * 18 17 16 44 44 H 1.08998 * 109.47098 * 59.99863 * 18 17 16 45 45 H 0.96994 * 120.00572 * 179.97438 * 22 21 19 46 46 H 1.07997 * 120.05730 * 180.25295 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5308 2.2202 -0.0005 5 7 3.4866 1.1673 -0.0005 6 6 4.2190 2.4361 -0.0011 7 6 5.7233 2.1566 -0.0010 8 6 6.4767 3.4618 -0.0009 9 8 5.8701 4.5121 -0.0014 10 7 7.8244 3.4618 -0.0013 11 6 8.5240 4.6684 0.1101 12 6 9.7421 4.8286 -0.5385 13 6 10.4329 6.0196 -0.4280 14 6 9.9117 7.0569 0.3222 15 6 8.6982 6.9005 0.9769 16 8 8.1899 7.9190 1.7191 17 6 8.9608 9.1203 1.7863 18 6 8.2334 10.1448 2.6595 19 6 9.0462 11.4119 2.7298 20 1 9.9875 11.4797 2.2047 21 6 8.5880 12.4849 3.4646 22 7 7.4420 12.4023 4.1045 23 14 9.5957 14.0553 3.5525 24 1 9.7732 14.6066 2.1849 25 1 8.8892 15.0501 4.3988 26 1 10.9255 13.7579 4.1427 27 6 8.0021 5.7065 0.8687 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 1.9500 -0.8400 0.0004 32 1 3.9716 0.3273 -0.0005 33 1 3.9559 3.0078 0.8889 34 1 3.9553 3.0075 -0.8910 35 1 5.9866 1.5847 -0.8907 36 1 5.9866 1.5854 0.8893 37 1 8.3094 2.6254 -0.0788 38 1 10.1491 4.0215 -1.1295 39 1 11.3798 6.1422 -0.9326 40 1 10.4518 7.9886 0.4028 41 1 9.9371 8.9017 2.2187 42 1 9.0903 9.5255 0.7828 43 1 7.2573 10.3634 2.2266 44 1 8.1035 9.7398 3.6631 45 1 7.1198 13.1569 4.6218 46 1 7.0556 5.5844 1.3742 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293420403.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:32 Heat of formation + Delta-G solvation = -115.213682 kcal Electronic energy + Delta-G solvation = -26992.149996 eV Core-core repulsion = 22880.700221 eV Total energy + Delta-G solvation = -4111.449774 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.76809 -41.01983 -40.54181 -38.53290 -36.42212 -35.76324 -35.59172 -35.35918 -32.62351 -32.33136 -30.89010 -30.10137 -27.60877 -27.01096 -25.21352 -23.82920 -23.56930 -22.28183 -22.09710 -21.28523 -19.87347 -19.52795 -18.41701 -18.25181 -17.31192 -17.26493 -17.06083 -16.96416 -16.78254 -16.72182 -16.44138 -16.10048 -15.47988 -15.31315 -15.04097 -14.77841 -14.44289 -14.36217 -14.30511 -14.28236 -13.86308 -13.37125 -13.23733 -13.03781 -12.94685 -12.72660 -12.63913 -12.60087 -12.49130 -12.22374 -11.79444 -11.61944 -11.54879 -11.45180 -11.25388 -10.94825 -10.63195 -10.47456 -9.82130 -9.42325 -9.01137 -8.27452 -6.42459 0.22931 0.48772 1.39716 1.44881 1.52616 1.53539 1.54926 2.05644 2.10539 2.31304 2.53811 2.83359 3.06461 3.34747 3.57449 3.90127 3.92410 4.06647 4.17118 4.20803 4.24693 4.26342 4.44852 4.46289 4.48159 4.58623 4.65385 4.70103 4.78412 4.82879 4.90048 4.99110 5.25310 5.27514 5.33160 5.38079 5.41229 5.42845 5.47743 5.52159 5.66652 5.91764 6.00528 6.05117 6.40705 6.55525 6.72312 7.11620 7.14140 7.27919 7.57451 8.85757 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012746 B = 0.001827 C = 0.001610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2196.184506 B =15324.506009 C =17385.828428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.733 5.733 3 C 0.689 3.311 4 O -0.647 6.647 5 N -0.724 5.724 6 C 0.153 3.847 7 C -0.127 4.127 8 C 0.506 3.494 9 O -0.567 6.567 10 N -0.652 5.652 11 C 0.179 3.821 12 C -0.172 4.172 13 C -0.053 4.053 14 C -0.236 4.236 15 C 0.121 3.879 16 O -0.347 6.347 17 C 0.085 3.915 18 C 0.026 3.974 19 C -0.547 4.547 20 H 0.074 0.926 21 C -0.001 4.001 22 N -0.933 5.933 23 Si 0.981 3.019 24 H -0.263 1.263 25 H -0.283 1.283 26 H -0.261 1.261 27 C -0.190 4.190 28 H 0.117 0.883 29 H 0.041 0.959 30 H 0.043 0.957 31 H 0.419 0.581 32 H 0.420 0.580 33 H 0.041 0.959 34 H 0.047 0.953 35 H 0.150 0.850 36 H 0.143 0.857 37 H 0.437 0.563 38 H 0.173 0.827 39 H 0.166 0.834 40 H 0.131 0.869 41 H 0.066 0.934 42 H 0.060 0.940 43 H -0.007 1.007 44 H -0.003 1.003 45 H 0.267 0.733 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.382 -36.455 -12.868 38.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.390 5.390 3 C 0.388 3.612 4 O -0.528 6.528 5 N -0.382 5.382 6 C 0.027 3.973 7 C -0.166 4.166 8 C 0.295 3.705 9 O -0.444 6.444 10 N -0.300 5.300 11 C 0.085 3.915 12 C -0.192 4.192 13 C -0.072 4.072 14 C -0.256 4.256 15 C 0.075 3.925 16 O -0.262 6.262 17 C 0.011 3.989 18 C -0.011 4.011 19 C -0.585 4.585 20 H 0.093 0.907 21 C -0.200 4.200 22 N -0.572 5.572 23 Si 0.804 3.196 24 H -0.188 1.188 25 H -0.208 1.208 26 H -0.185 1.185 27 C -0.211 4.211 28 H 0.136 0.864 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.255 0.745 32 H 0.258 0.742 33 H 0.059 0.941 34 H 0.066 0.934 35 H 0.168 0.832 36 H 0.161 0.839 37 H 0.278 0.722 38 H 0.190 0.810 39 H 0.184 0.816 40 H 0.149 0.851 41 H 0.084 0.916 42 H 0.079 0.921 43 H 0.011 0.989 44 H 0.015 0.985 45 H 0.076 0.924 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 0.034 -34.748 -12.632 36.972 hybrid contribution 0.348 0.570 0.518 0.845 sum 0.381 -34.178 -12.114 36.263 Atomic orbital electron populations 1.21530 0.77620 1.04175 1.00934 1.44760 1.08124 1.06706 1.79412 1.16341 0.82516 0.84491 0.77814 1.90956 1.69191 1.32923 1.59776 1.44680 1.03806 1.09992 1.79750 1.20651 0.90421 0.84781 1.01401 1.21731 0.91688 0.93816 1.09402 1.21437 0.82284 0.92331 0.74446 1.90864 1.68843 1.35976 1.48767 1.43321 1.06085 1.08341 1.72250 1.17412 0.92962 0.86517 0.94658 1.21152 0.94983 1.00176 1.02926 1.21165 0.99933 0.91025 0.95056 1.21530 0.96624 1.02795 1.04603 1.19303 0.93293 0.88176 0.91741 1.86097 1.49827 1.23679 1.66577 1.22886 0.94402 0.81435 1.00153 1.18986 0.95561 0.92716 0.93828 1.21376 1.06974 0.98305 1.31849 0.90740 1.26129 0.96294 1.03118 0.94420 1.70137 1.21699 1.33013 1.32371 0.85266 0.78488 0.77161 0.78703 1.18765 1.20832 1.18498 1.20271 1.02087 0.93246 1.05464 0.86426 0.94020 0.93822 0.74459 0.74164 0.94055 0.93445 0.83199 0.83870 0.72197 0.80989 0.81649 0.85115 0.91586 0.92140 0.98897 0.98486 0.92444 0.87319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.02 10.70 127.77 1.37 2.39 16 2 N -0.73 -7.54 5.72 -500.19 -2.86 -10.40 16 3 C 0.69 13.64 8.57 179.05 1.53 15.18 16 4 O -0.65 -21.45 16.34 -4.00 -0.07 -21.51 16 5 N -0.72 -8.59 5.56 -478.53 -2.66 -11.25 16 6 C 0.15 2.73 4.96 86.38 0.43 3.15 16 7 C -0.13 -0.96 5.82 29.85 0.17 -0.79 16 8 C 0.51 9.90 7.57 87.66 0.66 10.56 16 9 O -0.57 -19.19 13.67 -3.05 -0.04 -19.23 16 10 N -0.65 -9.82 5.34 -303.55 -1.62 -11.44 16 11 C 0.18 4.37 6.28 38.14 0.24 4.60 16 12 C -0.17 -3.17 9.96 22.41 0.22 -2.95 16 13 C -0.05 -1.15 10.03 22.24 0.22 -0.93 16 14 C -0.24 -7.35 9.04 22.39 0.20 -7.15 16 15 C 0.12 4.73 6.68 22.49 0.15 4.88 16 16 O -0.35 -16.60 10.13 -92.35 -0.94 -17.54 16 17 C 0.09 4.02 4.68 71.98 0.34 4.36 16 18 C 0.03 1.53 5.34 29.85 0.16 1.69 16 19 C -0.55 -32.13 9.11 25.60 0.23 -31.89 16 20 H 0.07 4.02 7.74 -2.91 -0.02 4.00 16 21 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 22 N -0.93 -59.13 13.29 21.45 0.28 -58.85 16 23 Si 0.98 44.72 29.54 68.60 2.03 46.75 16 24 H -0.26 -11.40 7.11 99.48 0.71 -10.70 16 25 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 26 H -0.26 -11.18 7.11 99.48 0.71 -10.48 16 27 C -0.19 -6.78 8.59 22.49 0.19 -6.59 16 28 H 0.12 0.17 8.14 -2.38 -0.02 0.15 16 29 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.42 0.53 8.84 -92.71 -0.82 -0.29 16 32 H 0.42 0.55 8.49 -92.71 -0.79 -0.24 16 33 H 0.04 1.06 8.10 -2.39 -0.02 1.04 16 34 H 0.05 1.15 8.10 -2.39 -0.02 1.13 16 35 H 0.15 -0.15 8.14 -2.39 -0.02 -0.17 16 36 H 0.14 0.11 8.14 -2.39 -0.02 0.09 16 37 H 0.44 1.69 8.82 -92.71 -0.82 0.88 16 38 H 0.17 1.49 8.06 -2.91 -0.02 1.46 16 39 H 0.17 2.26 8.06 -2.91 -0.02 2.24 16 40 H 0.13 3.99 6.29 -2.91 -0.02 3.97 16 41 H 0.07 2.85 7.67 -2.39 -0.02 2.83 16 42 H 0.06 2.68 7.65 -2.39 -0.02 2.66 16 43 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 44 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 45 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 46 H 0.11 4.49 6.41 -2.91 -0.02 4.47 16 Total: -1.00 -99.39 393.23 -0.67 -100.06 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -1.39 Total: 6.50 kcal Atomic # 6 Polarization: -9.67 SS G_CDS: 6.59 Total: -3.08 kcal Atomic # 7 Polarization: -85.09 SS G_CDS: -6.86 Total: -91.95 kcal Atomic # 8 Polarization: -57.24 SS G_CDS: -1.04 Total: -58.28 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -99.39 -0.67 -100.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293420403.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.151 kcal (2) G-P(sol) polarization free energy of solvation -99.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds