Wall clock time and date at job start Tue Mar 31 2020 18:55:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42901 * 1
3 3 C 1.35905 * 116.99604 * 2 1
4 4 C 1.38745 * 120.05685 * 359.72933 * 3 2 1
5 5 C 1.38130 * 119.94480 * 179.69913 * 4 3 2
6 6 C 1.38291 * 120.05012 * 0.59399 * 5 4 3
7 7 C 1.38246 * 120.11190 * 359.67962 * 6 5 4
8 8 C 1.50703 * 119.97077 * 179.97438 * 7 6 5
9 9 C 1.52997 * 109.46906 * 270.02263 * 8 7 6
10 10 C 1.53008 * 109.46974 * 180.02562 * 9 8 7
11 11 N 1.46495 * 109.47167 * 179.97438 * 10 9 8
12 12 C 1.34774 * 120.00025 * 179.97438 * 11 10 9
13 13 O 1.21584 * 120.00102 * 0.02562 * 12 11 10
14 14 N 1.34784 * 119.99942 * 179.97438 * 12 11 10
15 15 C 1.46502 * 119.99781 * 180.02562 * 14 12 11
16 16 C 1.50700 * 109.47011 * 180.02562 * 15 14 12
17 17 O 1.21288 * 119.99880 * 0.02562 * 16 15 14
18 18 N 1.34770 * 120.00087 * 180.02562 * 16 15 14
19 19 C 1.37094 * 120.00455 * 179.97438 * 18 16 15
20 20 H 1.08004 * 119.99590 * 0.02562 * 19 18 16
21 21 C 1.38946 * 120.00431 * 180.02562 * 19 18 16
22 22 N 1.31412 * 120.00227 * 359.97438 * 21 19 18
23 23 Si 1.86799 * 120.00019 * 180.02562 * 21 19 18
24 24 H 1.48501 * 109.47358 * 59.99885 * 23 21 19
25 25 H 1.48499 * 109.47177 * 179.97438 * 23 21 19
26 26 H 1.48497 * 109.47361 * 299.99743 * 23 21 19
27 27 C 1.38159 * 120.05555 * 0.02562 * 7 6 5
28 28 H 1.08996 * 109.47352 * 299.99771 * 1 2 3
29 29 H 1.08999 * 109.47144 * 59.99795 * 1 2 3
30 30 H 1.08995 * 109.47253 * 179.97438 * 1 2 3
31 31 H 1.07997 * 120.03176 * 359.97124 * 4 3 2
32 32 H 1.07997 * 119.97739 * 180.29791 * 5 4 3
33 33 H 1.08001 * 119.94552 * 179.70178 * 6 5 4
34 34 H 1.09002 * 109.47303 * 30.02167 * 8 7 6
35 35 H 1.09000 * 109.47206 * 150.02292 * 8 7 6
36 36 H 1.08995 * 109.47455 * 299.99525 * 9 8 7
37 37 H 1.08993 * 109.47459 * 60.00249 * 9 8 7
38 38 H 1.09003 * 109.46674 * 299.99730 * 10 9 8
39 39 H 1.08993 * 109.46916 * 59.99804 * 10 9 8
40 40 H 0.97008 * 119.99881 * 0.02562 * 11 10 9
41 41 H 0.96994 * 119.99971 * 0.02562 * 14 12 11
42 42 H 1.09000 * 109.47320 * 300.00458 * 15 14 12
43 43 H 1.08999 * 109.46965 * 60.00764 * 15 14 12
44 44 H 0.97006 * 120.00216 * 0.02562 * 18 16 15
45 45 H 0.96999 * 120.00155 * 180.02562 * 22 21 19
46 46 H 1.08006 * 120.02917 * 180.02562 * 27 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0459 1.2110 0.0000
4 6 1.2914 2.3753 -0.0057
5 6 1.9207 3.6048 0.0006
6 6 3.3018 3.6759 0.0002
7 6 4.0559 2.5172 0.0001
8 6 5.5607 2.5983 -0.0010
9 6 6.0689 2.6257 -1.4438
10 6 7.5968 2.7074 -1.4450
11 7 8.0834 2.7331 -2.8265
12 6 9.4064 2.8043 -3.0737
13 8 10.1960 2.8468 -2.1502
14 7 9.8541 2.8274 -4.3448
15 6 11.2922 2.9042 -4.6135
16 6 11.5251 2.9163 -6.1024
17 8 10.5825 2.8662 -6.8640
18 7 12.7807 2.9828 -6.5875
19 6 12.9927 2.9932 -7.9420
20 1 12.1533 2.9486 -8.6202
21 6 14.2872 3.0613 -8.4421
22 7 15.3084 3.1161 -7.6170
23 14 14.5758 3.0762 -10.2876
24 1 13.8980 4.2546 -10.8852
25 1 16.0335 3.1535 -10.5601
26 1 14.0254 1.8330 -10.8849
27 6 3.4311 1.2849 -0.0001
28 1 -0.3634 0.5138 0.8900
29 1 -0.3633 0.5139 -0.8900
30 1 -0.3633 -1.0276 -0.0005
31 1 0.2128 2.3203 -0.0106
32 1 1.3339 4.5114 0.0011
33 1 3.7922 4.6381 0.0002
34 1 5.8760 3.5065 0.5126
35 1 5.9718 1.7291 0.5125
36 1 5.7537 1.7175 -1.9574
37 1 5.6579 3.4948 -1.9574
38 1 7.9124 3.6155 -0.9312
39 1 8.0074 1.8381 -0.9316
40 1 7.4534 2.6996 -3.5634
41 1 9.2242 2.7931 -5.0816
42 1 11.6955 3.8173 -4.1756
43 1 11.7905 2.0399 -4.1745
44 1 13.5346 3.0225 -5.9784
45 1 16.2121 3.1639 -7.9662
46 1 4.0206 0.3800 0.0003
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000344711852.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:55:55
Heat of formation + Delta-G solvation = -92.986416 kcal
Electronic energy + Delta-G solvation = -26465.814925 eV
Core-core repulsion = 22355.328997 eV
Total energy + Delta-G solvation = -4110.485928 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 335.168 amu
Computer time = 0.71 seconds
Orbital eigenvalues (eV)
-40.56366 -39.80263 -38.32247 -38.11253 -35.91106 -34.37115 -33.64836 -33.46491
-31.36580 -31.09632 -30.16863 -27.87389 -27.54024 -25.76516 -24.31382 -22.95610
-22.28259 -21.24744 -20.56228 -19.55658 -18.34678 -18.14863 -17.89531 -16.74962
-16.41779 -16.19137 -16.16327 -15.84871 -15.55567 -15.07871 -14.70772 -14.61457
-14.32537 -14.16634 -13.94512 -13.76192 -13.64620 -13.50635 -13.31277 -12.61044
-12.54049 -12.37247 -12.14979 -12.05993 -11.85856 -11.61637 -11.60336 -11.41615
-11.18444 -11.09049 -11.02841 -10.49293 -10.29818 -10.01654 -9.60646 -9.20593
-9.12630 -8.60106 -8.59181 -8.56010 -8.07797 -6.49268 -3.91351 0.90576
1.06366 2.81319 2.87464 3.15244 3.22879 3.26871 3.36260 3.44388
3.77825 4.10773 4.27504 4.36766 4.47666 4.58051 4.63564 4.67334
4.68853 4.86754 4.92756 4.97860 4.98997 5.00066 5.09953 5.14258
5.19431 5.34764 5.40988 5.58027 5.66197 5.84052 5.87692 5.91355
5.98051 6.03988 6.04434 6.11113 6.24318 6.36409 6.54520 6.79160
6.97826 7.13442 7.47702 7.94420 8.27593 8.47639 8.83533 9.06696
9.41865 9.89944 10.67563
Molecular weight = 335.17amu
Principal moments of inertia in cm(-1)
A = 0.025055 B = 0.001394 C = 0.001359
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1117.259570 B =20085.650300 C =20605.333189
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.028 3.972
2 O -0.318 6.318
3 C 0.127 3.873
4 C -0.214 4.214
5 C -0.078 4.078
6 C -0.153 4.153
7 C -0.040 4.040
8 C -0.078 4.078
9 C -0.126 4.126
10 C 0.140 3.860
11 N -0.750 5.750
12 C 0.704 3.296
13 O -0.599 6.599
14 N -0.725 5.725
15 C 0.129 3.871
16 C 0.429 3.571
17 O -0.598 6.598
18 N -0.549 5.549
19 C -0.306 4.306
20 H 0.105 0.895
21 C 0.026 3.974
22 N -0.895 5.895
23 Si 0.934 3.066
24 H -0.273 1.273
25 H -0.283 1.283
26 H -0.273 1.273
27 C -0.149 4.149
28 H 0.055 0.945
29 H 0.055 0.945
30 H 0.100 0.900
31 H 0.126 0.874
32 H 0.124 0.876
33 H 0.125 0.875
34 H 0.080 0.920
35 H 0.079 0.921
36 H 0.072 0.928
37 H 0.072 0.928
38 H 0.065 0.935
39 H 0.066 0.934
40 H 0.397 0.603
41 H 0.407 0.593
42 H 0.082 0.918
43 H 0.082 0.918
44 H 0.396 0.604
45 H 0.275 0.725
46 H 0.131 0.869
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -27.277 -1.647 17.756 32.589
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.067 4.067
2 O -0.232 6.232
3 C 0.082 3.918
4 C -0.233 4.233
5 C -0.097 4.097
6 C -0.172 4.172
7 C -0.040 4.040
8 C -0.116 4.116
9 C -0.164 4.164
10 C 0.016 3.984
11 N -0.407 5.407
12 C 0.403 3.597
13 O -0.478 6.478
14 N -0.382 5.382
15 C 0.000 4.000
16 C 0.214 3.786
17 O -0.485 6.485
18 N -0.184 5.184
19 C -0.435 4.435
20 H 0.122 0.878
21 C -0.177 4.177
22 N -0.535 5.535
23 Si 0.760 3.240
24 H -0.198 1.198
25 H -0.209 1.209
26 H -0.198 1.198
27 C -0.167 4.167
28 H 0.073 0.927
29 H 0.074 0.926
30 H 0.118 0.882
31 H 0.144 0.856
32 H 0.142 0.858
33 H 0.143 0.857
34 H 0.099 0.901
35 H 0.098 0.902
36 H 0.091 0.909
37 H 0.091 0.909
38 H 0.084 0.916
39 H 0.084 0.916
40 H 0.230 0.770
41 H 0.244 0.756
42 H 0.100 0.900
43 H 0.100 0.900
44 H 0.230 0.770
45 H 0.084 0.916
46 H 0.149 0.851
Dipole moment (debyes) X Y Z Total
from point charges -26.830 -1.826 18.045 32.385
hybrid contribution -0.246 0.154 -1.239 1.272
sum -27.076 -1.672 16.806 31.912
Atomic orbital electron populations
1.23057 0.78332 1.04019 1.01338 1.86083 1.21432 1.26988 1.88688
1.19028 0.92349 0.84157 0.96245 1.21231 0.99992 0.92496 1.09596
1.20938 0.94651 0.96959 0.97111 1.21006 0.93707 0.98183 1.04267
1.19657 0.95654 0.92128 0.96556 1.20533 0.90253 1.03891 0.96930
1.21776 0.94466 1.03389 0.96747 1.21143 0.92649 1.02392 0.82253
1.45042 1.05747 1.81133 1.08764 1.15860 0.82386 0.78013 0.83395
1.90902 1.54816 1.58466 1.43597 1.44778 1.08535 1.78693 1.06241
1.20776 0.80774 1.03054 0.95370 1.19774 0.84389 0.85465 0.88944
1.90486 1.41777 1.57318 1.58921 1.41777 1.05815 1.62530 1.08261
1.19681 0.93573 1.48230 0.82059 0.87756 1.25314 0.94945 0.96794
1.00604 1.69607 0.99297 1.49141 1.35441 0.85873 0.77139 0.79115
0.81827 1.19811 1.20862 1.19806 1.20335 0.91283 0.98375 1.06738
0.92668 0.92613 0.88183 0.85649 0.85782 0.85721 0.90108 0.90193
0.90910 0.90915 0.91622 0.91614 0.76971 0.75621 0.90042 0.90035
0.77004 0.91553 0.85118
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.13 9.81 101.05 0.99 1.12 16
2 O -0.32 -2.70 10.50 -19.44 -0.20 -2.91 16
3 C 0.13 1.10 6.69 -39.22 -0.26 0.84 16
4 C -0.21 -1.57 9.04 -39.43 -0.36 -1.92 16
5 C -0.08 -0.54 10.04 -39.60 -0.40 -0.94 16
6 C -0.15 -1.10 9.70 -39.56 -0.38 -1.49 16
7 C -0.04 -0.30 5.13 -104.65 -0.54 -0.84 16
8 C -0.08 -0.50 5.34 -27.88 -0.15 -0.65 16
9 C -0.13 -0.89 5.31 -26.73 -0.14 -1.04 16
10 C 0.14 1.39 5.67 -4.04 -0.02 1.36 16
11 N -0.75 -8.99 5.56 -65.22 -0.36 -9.35 16
12 C 0.70 11.62 8.57 -86.91 -0.74 10.88 16
13 O -0.60 -11.92 16.34 5.29 0.09 -11.84 16
14 N -0.73 -12.40 5.53 -66.41 -0.37 -12.77 16
15 C 0.13 2.44 6.15 -5.19 -0.03 2.40 16
16 C 0.43 9.93 7.85 -10.99 -0.09 9.84 16
17 O -0.60 -15.39 15.24 5.55 0.08 -15.30 16
18 N -0.55 -13.71 5.29 -10.97 -0.06 -13.77 16
19 C -0.31 -8.36 9.68 -14.94 -0.14 -8.50 16
20 H 0.10 2.96 7.16 -52.48 -0.38 2.58 16
21 C 0.03 0.69 5.50 -17.47 -0.10 0.59 16
22 N -0.89 -23.97 13.05 55.50 0.72 -23.25 16
23 Si 0.93 20.61 29.55 -169.99 -5.02 15.58 16
24 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16
25 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16
26 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16
27 C -0.15 -1.26 9.64 -39.44 -0.38 -1.64 16
28 H 0.05 0.20 7.67 -51.93 -0.40 -0.20 16
29 H 0.06 0.21 7.65 -51.93 -0.40 -0.19 16
30 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16
31 H 0.13 0.66 6.30 -52.49 -0.33 0.33 16
32 H 0.12 0.59 8.06 -52.49 -0.42 0.17 16
33 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16
34 H 0.08 0.46 8.09 -51.93 -0.42 0.04 16
35 H 0.08 0.48 8.08 -51.93 -0.42 0.06 16
36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16
37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16
38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16
39 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16
40 H 0.40 3.83 8.49 -40.82 -0.35 3.48 16
41 H 0.41 6.72 7.45 -40.82 -0.30 6.42 16
42 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16
43 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16
44 H 0.40 9.52 7.90 -40.82 -0.32 9.20 16
45 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16
46 H 0.13 1.02 8.06 -52.48 -0.42 0.60 16
LS Contribution 394.77 15.07 5.95 5.95
Total: -1.00 -33.77 394.77 -8.59 -42.36
By element:
Atomic # 1 Polarization: 21.95 SS G_CDS: -6.68 Total: 15.27 kcal
Atomic # 6 Polarization: 12.77 SS G_CDS: -2.74 Total: 10.03 kcal
Atomic # 7 Polarization: -59.07 SS G_CDS: -0.06 Total: -59.14 kcal
Atomic # 8 Polarization: -30.01 SS G_CDS: -0.03 Total: -30.05 kcal
Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.58 kcal
Total LS contribution 5.95 Total: 5.95 kcal
Total: -33.77 -8.59 -42.36 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000344711852.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -50.630 kcal
(2) G-P(sol) polarization free energy of solvation -33.765 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.395 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.591 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.357 kcal
(6) G-S(sol) free energy of system = (1) + (5) -92.986 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.71 seconds