Wall clock time and date at job start Tue Mar 31 2020 18:55:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42901 * 1
3 3 C 1.35905 * 116.99604 * 2 1
4 4 C 1.38745 * 120.05685 * 359.72933 * 3 2 1
5 5 C 1.38130 * 119.94480 * 179.69913 * 4 3 2
6 6 C 1.38291 * 120.05012 * 0.59399 * 5 4 3
7 7 C 1.38246 * 120.11190 * 359.67962 * 6 5 4
8 8 C 1.50703 * 119.97077 * 179.97438 * 7 6 5
9 9 C 1.52997 * 109.46906 * 270.02263 * 8 7 6
10 10 C 1.53008 * 109.46974 * 180.02562 * 9 8 7
11 11 N 1.46495 * 109.47167 * 179.97438 * 10 9 8
12 12 C 1.34774 * 120.00025 * 179.97438 * 11 10 9
13 13 O 1.21584 * 120.00102 * 0.02562 * 12 11 10
14 14 N 1.34784 * 119.99942 * 179.97438 * 12 11 10
15 15 C 1.46502 * 119.99781 * 180.02562 * 14 12 11
16 16 C 1.50700 * 109.47011 * 180.02562 * 15 14 12
17 17 O 1.21288 * 119.99880 * 0.02562 * 16 15 14
18 18 N 1.34770 * 120.00087 * 180.02562 * 16 15 14
19 19 C 1.37094 * 120.00455 * 179.97438 * 18 16 15
20 20 H 1.08004 * 119.99590 * 0.02562 * 19 18 16
21 21 C 1.38946 * 120.00431 * 180.02562 * 19 18 16
22 22 N 1.31412 * 120.00227 * 359.97438 * 21 19 18
23 23 Si 1.86799 * 120.00019 * 180.02562 * 21 19 18
24 24 H 1.48501 * 109.47358 * 59.99885 * 23 21 19
25 25 H 1.48499 * 109.47177 * 179.97438 * 23 21 19
26 26 H 1.48497 * 109.47361 * 299.99743 * 23 21 19
27 27 C 1.38159 * 120.05555 * 0.02562 * 7 6 5
28 28 H 1.08996 * 109.47352 * 299.99771 * 1 2 3
29 29 H 1.08999 * 109.47144 * 59.99795 * 1 2 3
30 30 H 1.08995 * 109.47253 * 179.97438 * 1 2 3
31 31 H 1.07997 * 120.03176 * 359.97124 * 4 3 2
32 32 H 1.07997 * 119.97739 * 180.29791 * 5 4 3
33 33 H 1.08001 * 119.94552 * 179.70178 * 6 5 4
34 34 H 1.09002 * 109.47303 * 30.02167 * 8 7 6
35 35 H 1.09000 * 109.47206 * 150.02292 * 8 7 6
36 36 H 1.08995 * 109.47455 * 299.99525 * 9 8 7
37 37 H 1.08993 * 109.47459 * 60.00249 * 9 8 7
38 38 H 1.09003 * 109.46674 * 299.99730 * 10 9 8
39 39 H 1.08993 * 109.46916 * 59.99804 * 10 9 8
40 40 H 0.97008 * 119.99881 * 0.02562 * 11 10 9
41 41 H 0.96994 * 119.99971 * 0.02562 * 14 12 11
42 42 H 1.09000 * 109.47320 * 300.00458 * 15 14 12
43 43 H 1.08999 * 109.46965 * 60.00764 * 15 14 12
44 44 H 0.97006 * 120.00216 * 0.02562 * 18 16 15
45 45 H 0.96999 * 120.00155 * 180.02562 * 22 21 19
46 46 H 1.08006 * 120.02917 * 180.02562 * 27 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0459 1.2110 0.0000
4 6 1.2914 2.3753 -0.0057
5 6 1.9207 3.6048 0.0006
6 6 3.3018 3.6759 0.0002
7 6 4.0559 2.5172 0.0001
8 6 5.5607 2.5983 -0.0010
9 6 6.0689 2.6257 -1.4438
10 6 7.5968 2.7074 -1.4450
11 7 8.0834 2.7331 -2.8265
12 6 9.4064 2.8043 -3.0737
13 8 10.1960 2.8468 -2.1502
14 7 9.8541 2.8274 -4.3448
15 6 11.2922 2.9042 -4.6135
16 6 11.5251 2.9163 -6.1024
17 8 10.5825 2.8662 -6.8640
18 7 12.7807 2.9828 -6.5875
19 6 12.9927 2.9932 -7.9420
20 1 12.1533 2.9486 -8.6202
21 6 14.2872 3.0613 -8.4421
22 7 15.3084 3.1161 -7.6170
23 14 14.5758 3.0762 -10.2876
24 1 13.8980 4.2546 -10.8852
25 1 16.0335 3.1535 -10.5601
26 1 14.0254 1.8330 -10.8849
27 6 3.4311 1.2849 -0.0001
28 1 -0.3634 0.5138 0.8900
29 1 -0.3633 0.5139 -0.8900
30 1 -0.3633 -1.0276 -0.0005
31 1 0.2128 2.3203 -0.0106
32 1 1.3339 4.5114 0.0011
33 1 3.7922 4.6381 0.0002
34 1 5.8760 3.5065 0.5126
35 1 5.9718 1.7291 0.5125
36 1 5.7537 1.7175 -1.9574
37 1 5.6579 3.4948 -1.9574
38 1 7.9124 3.6155 -0.9312
39 1 8.0074 1.8381 -0.9316
40 1 7.4534 2.6996 -3.5634
41 1 9.2242 2.7931 -5.0816
42 1 11.6955 3.8173 -4.1756
43 1 11.7905 2.0399 -4.1745
44 1 13.5346 3.0225 -5.9784
45 1 16.2121 3.1639 -7.9662
46 1 4.0206 0.3800 0.0003
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000344711852.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:55:54
Heat of formation + Delta-G solvation = -117.010265 kcal
Electronic energy + Delta-G solvation = -26466.856677 eV
Core-core repulsion = 22355.328997 eV
Total energy + Delta-G solvation = -4111.527680 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 335.168 amu
Computer time = 0.81 seconds
Orbital eigenvalues (eV)
-41.20366 -41.04961 -40.01283 -38.77352 -36.81439 -36.18685 -35.24115 -34.31118
-33.35140 -31.68046 -30.88264 -29.13591 -28.15609 -26.84991 -25.91453 -23.50740
-22.99465 -22.09427 -21.54863 -21.34446 -20.09512 -19.46084 -18.69631 -17.44517
-17.35834 -17.29923 -17.01206 -16.86799 -16.64073 -16.46461 -16.16474 -15.94049
-15.50231 -15.36671 -15.13108 -14.84726 -14.54834 -14.24257 -13.96953 -13.91652
-13.70071 -13.52322 -13.13596 -13.08798 -12.88185 -12.83726 -12.59442 -12.45506
-12.20047 -12.12614 -11.89705 -11.75956 -11.58772 -11.54810 -11.40921 -10.53993
-10.40581 -10.08714 -9.77977 -9.75562 -9.13677 -8.49342 -5.99720 0.36355
0.51117 1.39388 1.43587 1.53999 1.65853 1.91630 2.14292 2.30115
2.38561 2.80224 3.07828 3.17895 3.37194 3.70971 3.89573 4.05686
4.11369 4.22920 4.29055 4.31080 4.35780 4.37754 4.45611 4.45951
4.48423 4.52599 4.58776 4.71999 4.74711 4.82750 4.92253 5.11512
5.21042 5.29454 5.33472 5.37528 5.40071 5.52243 5.53899 5.70864
5.86805 5.93002 5.99192 6.47197 6.49799 7.04877 7.05771 7.44506
7.55963 7.96190 8.67298
Molecular weight = 335.17amu
Principal moments of inertia in cm(-1)
A = 0.025055 B = 0.001394 C = 0.001359
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1117.259570 B =20085.650300 C =20605.333189
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.020 3.980
2 O -0.341 6.341
3 C 0.109 3.891
4 C -0.220 4.220
5 C -0.083 4.083
6 C -0.161 4.161
7 C -0.044 4.044
8 C -0.074 4.074
9 C -0.112 4.112
10 C 0.139 3.861
11 N -0.734 5.734
12 C 0.703 3.297
13 O -0.633 6.633
14 N -0.725 5.725
15 C 0.142 3.858
16 C 0.433 3.567
17 O -0.624 6.624
18 N -0.559 5.559
19 C -0.339 4.339
20 H 0.087 0.913
21 C -0.009 4.009
22 N -0.916 5.916
23 Si 0.997 3.003
24 H -0.270 1.270
25 H -0.272 1.272
26 H -0.270 1.270
27 C -0.168 4.168
28 H 0.065 0.935
29 H 0.063 0.937
30 H 0.115 0.885
31 H 0.143 0.857
32 H 0.146 0.854
33 H 0.140 0.860
34 H 0.090 0.910
35 H 0.081 0.919
36 H 0.073 0.927
37 H 0.080 0.920
38 H 0.063 0.937
39 H 0.059 0.941
40 H 0.410 0.590
41 H 0.410 0.590
42 H 0.091 0.909
43 H 0.091 0.909
44 H 0.399 0.601
45 H 0.280 0.720
46 H 0.128 0.872
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -28.423 -1.119 17.815 33.563
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.075 4.075
2 O -0.255 6.255
3 C 0.064 3.936
4 C -0.239 4.239
5 C -0.101 4.101
6 C -0.179 4.179
7 C -0.044 4.044
8 C -0.112 4.112
9 C -0.150 4.150
10 C 0.015 3.985
11 N -0.390 5.390
12 C 0.402 3.598
13 O -0.515 6.515
14 N -0.383 5.383
15 C 0.013 3.987
16 C 0.220 3.780
17 O -0.512 6.512
18 N -0.194 5.194
19 C -0.469 4.469
20 H 0.105 0.895
21 C -0.210 4.210
22 N -0.556 5.556
23 Si 0.820 3.180
24 H -0.195 1.195
25 H -0.196 1.196
26 H -0.195 1.195
27 C -0.187 4.187
28 H 0.083 0.917
29 H 0.082 0.918
30 H 0.133 0.867
31 H 0.161 0.839
32 H 0.164 0.836
33 H 0.158 0.842
34 H 0.109 0.891
35 H 0.100 0.900
36 H 0.092 0.908
37 H 0.098 0.902
38 H 0.081 0.919
39 H 0.077 0.923
40 H 0.246 0.754
41 H 0.248 0.752
42 H 0.109 0.891
43 H 0.109 0.891
44 H 0.233 0.767
45 H 0.089 0.911
46 H 0.146 0.854
Dipole moment (debyes) X Y Z Total
from point charges -28.026 -1.301 18.120 33.398
hybrid contribution 0.004 -0.024 -1.187 1.187
sum -28.022 -1.325 16.933 32.767
Atomic orbital electron populations
1.23302 0.76596 1.05386 1.02177 1.86047 1.23385 1.27292 1.88818
1.19264 0.92697 0.84743 0.96851 1.21488 1.00971 0.92257 1.09146
1.21265 0.94878 0.97650 0.96307 1.21273 0.94086 0.98647 1.03936
1.19754 0.96081 0.92026 0.96565 1.20509 0.89697 1.04534 0.96477
1.21652 0.92156 1.03759 0.97395 1.21285 0.94390 1.01968 0.80823
1.44996 1.04326 1.79410 1.10264 1.15984 0.83490 0.77798 0.82516
1.90879 1.56126 1.60139 1.44387 1.44701 1.07748 1.79079 1.06762
1.20575 0.82243 1.03941 0.91921 1.20421 0.83450 0.83510 0.90588
1.90463 1.42450 1.57987 1.60326 1.41823 1.06548 1.63282 1.07765
1.19715 0.93727 1.50403 0.83010 0.89547 1.26117 0.94259 0.95735
1.04904 1.69676 0.99684 1.49055 1.37150 0.84926 0.77478 0.79066
0.76495 1.19501 1.19637 1.19526 1.20496 0.91665 0.98796 1.07698
0.91683 0.91843 0.86681 0.83937 0.83637 0.84243 0.89117 0.90008
0.90842 0.90168 0.91892 0.92266 0.75398 0.75224 0.89069 0.89127
0.76691 0.91073 0.85406
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.16 9.81 113.37 1.11 1.27 16
2 O -0.34 -5.73 10.50 -92.48 -0.97 -6.70 16
3 C 0.11 1.86 6.69 22.50 0.15 2.01 16
4 C -0.22 -2.95 9.04 22.37 0.20 -2.74 16
5 C -0.08 -0.99 10.04 22.26 0.22 -0.77 16
6 C -0.16 -2.05 9.70 22.28 0.22 -1.83 16
7 C -0.04 -0.62 5.13 -19.88 -0.10 -0.73 16
8 C -0.07 -0.86 5.34 29.85 0.16 -0.70 16
9 C -0.11 -1.41 5.31 30.60 0.16 -1.24 16
10 C 0.14 2.57 5.67 86.38 0.49 3.06 16
11 N -0.73 -16.54 5.56 -478.54 -2.66 -19.20 16
12 C 0.70 22.49 8.57 179.05 1.53 24.02 16
13 O -0.63 -24.78 16.34 -3.98 -0.07 -24.84 16
14 N -0.73 -24.18 5.53 -482.29 -2.67 -26.85 16
15 C 0.14 5.29 6.15 85.63 0.53 5.81 16
16 C 0.43 20.11 7.85 87.66 0.69 20.80 16
17 O -0.62 -32.25 15.24 -3.05 -0.05 -32.30 16
18 N -0.56 -28.18 5.29 -307.00 -1.62 -29.81 16
19 C -0.34 -18.73 9.68 84.04 0.81 -17.92 16
20 H 0.09 5.00 7.16 -2.91 -0.02 4.98 16
21 C -0.01 -0.49 5.50 84.93 0.47 -0.02 16
22 N -0.92 -48.74 13.05 21.66 0.28 -48.45 16
23 Si 1.00 41.75 29.55 68.60 2.03 43.78 16
24 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16
25 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16
26 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16
27 C -0.17 -2.82 9.64 22.36 0.22 -2.60 16
28 H 0.06 0.39 7.67 -2.39 -0.02 0.37 16
29 H 0.06 0.41 7.65 -2.39 -0.02 0.39 16
30 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16
31 H 0.14 1.27 6.30 -2.91 -0.02 1.25 16
32 H 0.15 1.03 8.06 -2.91 -0.02 1.00 16
33 H 0.14 1.28 8.06 -2.91 -0.02 1.26 16
34 H 0.09 0.88 8.09 -2.39 -0.02 0.86 16
35 H 0.08 0.92 8.08 -2.39 -0.02 0.90 16
36 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16
37 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16
38 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16
39 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16
40 H 0.41 7.18 8.49 -92.70 -0.79 6.40 16
41 H 0.41 13.21 7.45 -92.71 -0.69 12.52 16
42 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16
43 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16
44 H 0.40 19.36 7.90 -92.70 -0.73 18.63 16
45 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16
46 H 0.13 2.07 8.06 -2.91 -0.02 2.04 16
Total: -1.00 -71.84 394.77 -0.04 -71.88
By element:
Atomic # 1 Polarization: 45.26 SS G_CDS: -1.18 Total: 44.08 kcal
Atomic # 6 Polarization: 21.56 SS G_CDS: 6.86 Total: 28.42 kcal
Atomic # 7 Polarization: -117.64 SS G_CDS: -6.67 Total: -124.31 kcal
Atomic # 8 Polarization: -62.76 SS G_CDS: -1.08 Total: -63.84 kcal
Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.78 kcal
Total: -71.84 -0.04 -71.88 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000344711852.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -45.129 kcal
(2) G-P(sol) polarization free energy of solvation -71.837 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.966 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.044 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.882 kcal
(6) G-S(sol) free energy of system = (1) + (5) -117.010 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.82 seconds