Wall clock time and date at job start Tue Mar 31 2020 18:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46497 * 120.00205 * 2 1 4 4 C 1.52999 * 109.46786 * 89.99908 * 3 2 1 5 5 C 1.50698 * 109.47120 * 180.02562 * 4 3 2 6 6 C 1.38261 * 119.99833 * 261.36280 * 5 4 3 7 7 C 1.38214 * 119.99875 * 179.72604 * 6 5 4 8 8 C 1.38257 * 120.00146 * 0.27609 * 7 6 5 9 9 C 1.38217 * 119.99640 * 359.97438 * 8 7 6 10 10 C 1.38217 * 120.00175 * 81.55619 * 5 4 3 11 11 N 1.48010 * 119.99827 * 0.04405 * 10 5 4 12 12 O 1.21803 * 119.99817 * 174.35487 * 11 10 5 13 13 O 1.21794 * 120.00406 * 354.35190 * 11 10 5 14 14 C 1.34778 * 120.00172 * 180.02562 * 2 1 3 15 15 O 1.21582 * 120.00103 * 179.97438 * 14 2 1 16 16 N 1.34785 * 119.99847 * 0.02562 * 14 2 1 17 17 C 1.46501 * 119.99697 * 179.97438 * 16 14 2 18 18 C 1.53002 * 109.46724 * 180.02562 * 17 16 14 19 19 C 1.52996 * 109.46877 * 180.02562 * 18 17 16 20 20 C 1.50700 * 109.47213 * 179.97438 * 19 18 17 21 21 H 1.08004 * 119.99856 * 0.02562 * 20 19 18 22 22 C 1.37880 * 120.00132 * 180.02562 * 20 19 18 23 23 N 1.31510 * 120.00176 * 359.97438 * 22 20 19 24 24 Si 1.86808 * 119.99932 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47263 * 89.99540 * 24 22 20 26 26 H 1.48490 * 109.46757 * 209.99928 * 24 22 20 27 27 H 1.48505 * 109.46751 * 329.99675 * 24 22 20 28 28 H 1.09001 * 109.47195 * 90.00131 * 1 2 3 29 29 H 1.09005 * 109.47040 * 209.99517 * 1 2 3 30 30 H 1.08998 * 109.47541 * 329.99600 * 1 2 3 31 31 H 1.09001 * 109.46831 * 330.00897 * 3 2 1 32 32 H 1.08992 * 109.47499 * 210.00303 * 3 2 1 33 33 H 1.09006 * 109.47062 * 60.00704 * 4 3 2 34 34 H 1.08997 * 109.47863 * 300.00608 * 4 3 2 35 35 H 1.08000 * 120.00279 * 359.97438 * 6 5 4 36 36 H 1.08001 * 119.99711 * 180.25276 * 7 6 5 37 37 H 1.07996 * 120.00225 * 179.97438 * 8 7 6 38 38 H 1.08005 * 119.99361 * 179.97438 * 9 8 7 39 39 H 0.96997 * 120.00066 * 0.02562 * 16 14 2 40 40 H 1.09003 * 109.46927 * 299.99799 * 17 16 14 41 41 H 1.08998 * 109.47282 * 59.99762 * 17 16 14 42 42 H 1.09003 * 109.47201 * 299.99566 * 18 17 16 43 43 H 1.08998 * 109.47488 * 59.99824 * 18 17 16 44 44 H 1.08998 * 109.47464 * 300.00080 * 19 18 17 45 45 H 1.09006 * 109.47089 * 59.99911 * 19 18 17 46 46 H 0.96999 * 120.00518 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7103 1.4425 5 6 3.2054 3.0156 1.4426 6 6 4.5763 3.0229 1.6223 7 6 5.2677 4.2197 1.6167 8 6 4.5877 5.4100 1.4372 9 6 3.2166 5.4031 1.2627 10 6 2.5252 4.2059 1.2670 11 7 1.0569 4.1985 1.0799 12 8 0.4443 5.2500 1.0282 13 8 0.4614 3.1411 0.9776 14 6 2.1389 -1.1672 -0.0005 15 8 3.3547 -1.1672 -0.0010 16 7 1.4650 -2.3345 -0.0016 17 6 2.1976 -3.6032 -0.0027 18 6 1.2033 -4.7661 -0.0044 19 6 1.9683 -6.0910 -0.0049 20 6 0.9891 -7.2365 -0.0060 21 1 -0.0728 -7.0392 -0.0066 22 6 1.4487 -8.5365 -0.0060 23 7 2.7416 -8.7768 -0.0058 24 14 0.2348 -9.9564 -0.0080 25 1 -0.0854 -10.3319 -1.4086 26 1 0.8340 -11.1207 0.6921 27 1 -1.0092 -9.5449 0.6909 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3634 0.8899 0.5139 31 1 1.6083 2.0284 -0.5137 32 1 3.1498 1.1384 -0.5138 33 1 3.0416 0.9506 1.9563 34 1 1.5001 1.8406 1.9564 35 1 5.1075 2.0931 1.7630 36 1 6.3390 4.2250 1.7530 37 1 5.1279 6.3452 1.4332 38 1 2.6854 6.3331 1.1228 39 1 0.4950 -2.3345 -0.0023 40 1 2.8242 -3.6601 -0.8928 41 1 2.8242 -3.6617 0.8872 42 1 0.5763 -4.7094 0.8855 43 1 0.5769 -4.7074 -0.8945 44 1 2.5956 -6.1481 -0.8945 45 1 2.5944 -6.1495 0.8855 46 1 3.0651 -9.6913 -0.0054 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344762022.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:29 Heat of formation + Delta-G solvation = -10.685246 kcal Electronic energy + Delta-G solvation = -28081.861774 eV Core-core repulsion = 23974.944693 eV Total energy + Delta-G solvation = -4106.917081 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.61503 -40.23151 -39.79158 -37.13069 -36.11652 -35.19898 -33.88836 -33.12794 -32.37853 -31.15822 -29.52266 -27.10769 -26.89700 -26.14635 -24.29781 -23.12442 -22.79081 -21.91232 -20.60204 -19.57726 -19.39244 -18.92108 -17.96602 -17.80801 -16.88820 -16.52524 -16.13206 -16.03134 -15.73687 -15.20405 -14.57425 -14.48527 -14.30065 -14.24867 -13.81584 -13.66761 -13.37970 -13.10586 -12.75140 -12.52641 -12.46928 -12.23333 -11.95982 -11.78790 -11.76173 -11.70680 -11.65653 -11.31183 -10.89309 -10.73111 -10.68201 -10.57733 -10.12129 -10.03262 -9.84014 -9.74743 -9.42139 -9.10920 -8.90299 -8.45796 -8.35902 -6.00602 -4.03502 -0.54456 0.41444 0.96182 1.06284 2.67996 2.81480 3.31768 3.35563 3.38073 3.40999 3.85582 3.87652 4.10160 4.21494 4.38051 4.43966 4.45704 4.67867 4.78614 4.91511 5.05530 5.09766 5.20986 5.33114 5.34914 5.35166 5.41701 5.54859 5.62279 5.67593 5.75064 5.79531 5.83368 5.84176 6.19575 6.21042 6.39762 6.56938 6.64817 6.84574 7.04540 7.06161 7.35107 7.65373 7.78332 7.98445 8.10340 8.39593 8.75585 9.03203 9.60532 11.10669 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.025689 B = 0.001826 C = 0.001727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.687795 B =15329.030620 C =16212.831641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.632 5.632 3 C 0.154 3.846 4 C -0.118 4.118 5 C -0.006 4.006 6 C -0.114 4.114 7 C -0.063 4.063 8 C -0.125 4.125 9 C -0.055 4.055 10 C -0.048 4.048 11 N 0.032 4.968 12 O -0.171 6.171 13 O -0.153 6.153 14 C 0.701 3.299 15 O -0.594 6.594 16 N -0.740 5.740 17 C 0.134 3.866 18 C -0.120 4.120 19 C 0.024 3.976 20 C -0.522 4.522 21 H 0.055 0.945 22 C 0.056 3.944 23 N -0.894 5.894 24 Si 0.893 3.107 25 H -0.281 1.281 26 H -0.286 1.286 27 H -0.274 1.274 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.103 0.897 35 H 0.151 0.849 36 H 0.144 0.856 37 H 0.146 0.854 38 H 0.152 0.848 39 H 0.395 0.605 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.053 0.947 43 H 0.054 0.946 44 H 0.019 0.981 45 H 0.019 0.981 46 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.566 32.247 3.260 32.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.369 5.369 3 C 0.030 3.970 4 C -0.157 4.157 5 C -0.008 4.008 6 C -0.133 4.133 7 C -0.081 4.081 8 C -0.144 4.144 9 C -0.074 4.074 10 C -0.131 4.131 11 N 0.548 4.452 12 O -0.383 6.383 13 O -0.368 6.368 14 C 0.402 3.598 15 O -0.473 6.473 16 N -0.396 5.396 17 C 0.011 3.989 18 C -0.159 4.159 19 C -0.014 4.014 20 C -0.560 4.560 21 H 0.074 0.926 22 C -0.145 4.145 23 N -0.533 5.533 24 Si 0.721 3.279 25 H -0.207 1.207 26 H -0.212 1.212 27 H -0.199 1.199 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.103 0.897 31 H 0.094 0.906 32 H 0.100 0.900 33 H 0.106 0.894 34 H 0.121 0.879 35 H 0.168 0.832 36 H 0.162 0.838 37 H 0.164 0.836 38 H 0.170 0.830 39 H 0.230 0.770 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.037 0.963 45 H 0.037 0.963 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.263 32.072 3.335 32.410 hybrid contribution -1.483 -0.783 0.004 1.677 sum 1.780 31.289 3.339 31.517 Atomic orbital electron populations 1.21798 0.79449 1.03548 1.01884 1.46917 1.06534 1.04519 1.78958 1.21037 0.97549 0.84251 0.94208 1.21513 1.01500 0.92114 1.00525 1.19863 0.94369 0.93725 0.92857 1.21339 0.92040 0.99892 1.00004 1.21694 1.01342 0.92019 0.93031 1.21231 0.92718 0.99545 1.00902 1.21062 0.94874 0.96833 0.94618 1.21003 0.79848 0.96642 1.15605 1.43583 1.03458 1.00373 0.97765 1.94544 1.68105 1.21183 1.54482 1.94463 1.70037 1.19737 1.52594 1.15979 0.85376 0.80471 0.77930 1.90886 1.11614 1.86349 1.58431 1.45539 1.09954 1.05117 1.78966 1.21507 0.95144 0.80441 1.01797 1.21889 0.97872 0.95260 1.00833 1.19026 0.95473 0.89198 0.97659 1.21211 0.93010 0.90936 1.50835 0.92637 1.25034 0.95131 0.99029 0.95319 1.69963 1.12519 1.20188 1.50624 0.86580 0.81260 0.81984 0.78082 1.20675 1.21231 1.19895 0.92732 0.91481 0.89694 0.90579 0.90006 0.89408 0.87865 0.83165 0.83836 0.83616 0.83040 0.77000 0.92009 0.92017 0.92780 0.92763 0.96263 0.96263 0.92951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.70 10.20 59.85 0.61 1.31 16 2 N -0.63 -7.63 2.87 -187.36 -0.54 -8.17 16 3 C 0.15 1.67 4.89 -4.04 -0.02 1.65 16 4 C -0.12 -1.14 4.93 -27.88 -0.14 -1.28 16 5 C -0.01 -0.05 5.13 -104.62 -0.54 -0.59 16 6 C -0.11 -0.73 9.67 -39.58 -0.38 -1.12 16 7 C -0.06 -0.27 10.05 -39.58 -0.40 -0.67 16 8 C -0.13 -0.51 10.05 -39.58 -0.40 -0.91 16 9 C -0.05 -0.33 9.56 -39.58 -0.38 -0.71 16 10 C -0.05 -0.41 6.83 -79.95 -0.55 -0.95 16 11 N 0.03 0.33 4.45 33.96 0.15 0.48 16 12 O -0.17 -1.91 18.46 -29.46 -0.54 -2.45 16 13 O -0.15 -1.65 12.36 -29.46 -0.36 -2.02 16 14 C 0.70 11.04 8.28 -86.91 -0.72 10.32 16 15 O -0.59 -11.44 15.92 5.29 0.08 -11.35 16 16 N -0.74 -11.20 5.42 -65.22 -0.35 -11.55 16 17 C 0.13 2.43 5.67 -4.04 -0.02 2.40 16 18 C -0.12 -2.38 5.27 -26.73 -0.14 -2.52 16 19 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 20 C -0.52 -14.61 9.11 -34.44 -0.31 -14.92 16 21 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 22 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 23 N -0.89 -26.87 13.29 55.43 0.74 -26.14 16 24 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 25 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 26 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 27 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.56 6.37 -51.93 -0.33 0.23 16 30 H 0.08 0.70 6.89 -51.93 -0.36 0.35 16 31 H 0.08 0.77 6.51 -51.93 -0.34 0.43 16 32 H 0.08 0.99 7.42 -51.93 -0.39 0.60 16 33 H 0.09 0.93 8.02 -51.93 -0.42 0.51 16 34 H 0.10 1.03 5.95 -51.93 -0.31 0.72 16 35 H 0.15 0.87 8.05 -52.49 -0.42 0.45 16 36 H 0.14 0.25 8.06 -52.49 -0.42 -0.17 16 37 H 0.15 0.19 8.06 -52.49 -0.42 -0.23 16 38 H 0.15 0.73 7.62 -52.48 -0.40 0.33 16 39 H 0.39 4.94 6.20 -40.82 -0.25 4.69 16 40 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 41 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 42 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 43 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 46 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 385.91 15.07 5.82 5.82 Total: -1.00 -34.43 385.91 -10.21 -44.64 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -6.56 Total: 0.22 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: -3.62 Total: -6.01 kcal Atomic # 7 Polarization: -45.37 SS G_CDS: 0.00 Total: -45.37 kcal Atomic # 8 Polarization: -15.00 SS G_CDS: -0.82 Total: -15.82 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.43 -10.21 -44.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344762022.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.955 kcal (2) G-P(sol) polarization free energy of solvation -34.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds