Wall clock time and date at job start Tue Mar 31 2020 18:31:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46497 * 120.00205 * 2 1 4 4 C 1.52999 * 109.46786 * 89.99908 * 3 2 1 5 5 C 1.50698 * 109.47120 * 180.02562 * 4 3 2 6 6 C 1.38261 * 119.99833 * 261.36280 * 5 4 3 7 7 C 1.38214 * 119.99875 * 179.72604 * 6 5 4 8 8 C 1.38257 * 120.00146 * 0.27609 * 7 6 5 9 9 C 1.38217 * 119.99640 * 359.97438 * 8 7 6 10 10 C 1.38217 * 120.00175 * 81.55619 * 5 4 3 11 11 N 1.48010 * 119.99827 * 0.04405 * 10 5 4 12 12 O 1.21803 * 119.99817 * 174.35487 * 11 10 5 13 13 O 1.21794 * 120.00406 * 354.35190 * 11 10 5 14 14 C 1.34778 * 120.00172 * 180.02562 * 2 1 3 15 15 O 1.21582 * 120.00103 * 179.97438 * 14 2 1 16 16 N 1.34785 * 119.99847 * 0.02562 * 14 2 1 17 17 C 1.46501 * 119.99697 * 179.97438 * 16 14 2 18 18 C 1.53002 * 109.46724 * 180.02562 * 17 16 14 19 19 C 1.52996 * 109.46877 * 180.02562 * 18 17 16 20 20 C 1.50700 * 109.47213 * 179.97438 * 19 18 17 21 21 H 1.08004 * 119.99856 * 0.02562 * 20 19 18 22 22 C 1.37880 * 120.00132 * 180.02562 * 20 19 18 23 23 N 1.31510 * 120.00176 * 359.97438 * 22 20 19 24 24 Si 1.86808 * 119.99932 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47263 * 89.99540 * 24 22 20 26 26 H 1.48490 * 109.46757 * 209.99928 * 24 22 20 27 27 H 1.48505 * 109.46751 * 329.99675 * 24 22 20 28 28 H 1.09001 * 109.47195 * 90.00131 * 1 2 3 29 29 H 1.09005 * 109.47040 * 209.99517 * 1 2 3 30 30 H 1.08998 * 109.47541 * 329.99600 * 1 2 3 31 31 H 1.09001 * 109.46831 * 330.00897 * 3 2 1 32 32 H 1.08992 * 109.47499 * 210.00303 * 3 2 1 33 33 H 1.09006 * 109.47062 * 60.00704 * 4 3 2 34 34 H 1.08997 * 109.47863 * 300.00608 * 4 3 2 35 35 H 1.08000 * 120.00279 * 359.97438 * 6 5 4 36 36 H 1.08001 * 119.99711 * 180.25276 * 7 6 5 37 37 H 1.07996 * 120.00225 * 179.97438 * 8 7 6 38 38 H 1.08005 * 119.99361 * 179.97438 * 9 8 7 39 39 H 0.96997 * 120.00066 * 0.02562 * 16 14 2 40 40 H 1.09003 * 109.46927 * 299.99799 * 17 16 14 41 41 H 1.08998 * 109.47282 * 59.99762 * 17 16 14 42 42 H 1.09003 * 109.47201 * 299.99566 * 18 17 16 43 43 H 1.08998 * 109.47488 * 59.99824 * 18 17 16 44 44 H 1.08998 * 109.47464 * 300.00080 * 19 18 17 45 45 H 1.09006 * 109.47089 * 59.99911 * 19 18 17 46 46 H 0.96999 * 120.00518 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7103 1.4425 5 6 3.2054 3.0156 1.4426 6 6 4.5763 3.0229 1.6223 7 6 5.2677 4.2197 1.6167 8 6 4.5877 5.4100 1.4372 9 6 3.2166 5.4031 1.2627 10 6 2.5252 4.2059 1.2670 11 7 1.0569 4.1985 1.0799 12 8 0.4443 5.2500 1.0282 13 8 0.4614 3.1411 0.9776 14 6 2.1389 -1.1672 -0.0005 15 8 3.3547 -1.1672 -0.0010 16 7 1.4650 -2.3345 -0.0016 17 6 2.1976 -3.6032 -0.0027 18 6 1.2033 -4.7661 -0.0044 19 6 1.9683 -6.0910 -0.0049 20 6 0.9891 -7.2365 -0.0060 21 1 -0.0728 -7.0392 -0.0066 22 6 1.4487 -8.5365 -0.0060 23 7 2.7416 -8.7768 -0.0058 24 14 0.2348 -9.9564 -0.0080 25 1 -0.0854 -10.3319 -1.4086 26 1 0.8340 -11.1207 0.6921 27 1 -1.0092 -9.5449 0.6909 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3634 0.8899 0.5139 31 1 1.6083 2.0284 -0.5137 32 1 3.1498 1.1384 -0.5138 33 1 3.0416 0.9506 1.9563 34 1 1.5001 1.8406 1.9564 35 1 5.1075 2.0931 1.7630 36 1 6.3390 4.2250 1.7530 37 1 5.1279 6.3452 1.4332 38 1 2.6854 6.3331 1.1228 39 1 0.4950 -2.3345 -0.0023 40 1 2.8242 -3.6601 -0.8928 41 1 2.8242 -3.6617 0.8872 42 1 0.5763 -4.7094 0.8855 43 1 0.5769 -4.7074 -0.8945 44 1 2.5956 -6.1481 -0.8945 45 1 2.5944 -6.1495 0.8855 46 1 3.0651 -9.6913 -0.0054 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344762022.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:28 Heat of formation + Delta-G solvation = -30.483600 kcal Electronic energy + Delta-G solvation = -28082.720295 eV Core-core repulsion = 23974.944693 eV Total energy + Delta-G solvation = -4107.775602 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.33567 -41.30091 -40.45401 -37.94411 -37.27892 -36.60267 -35.28693 -34.38530 -32.95043 -32.80146 -30.34180 -28.54190 -27.85230 -27.08395 -25.47645 -24.26615 -23.68435 -22.64004 -22.28592 -20.84212 -20.00832 -19.65071 -19.07788 -18.61244 -18.46879 -17.60360 -17.19112 -16.83565 -16.72658 -16.48443 -15.93021 -15.68161 -15.46480 -15.21876 -14.64219 -14.54226 -14.23263 -14.15227 -14.07829 -13.73007 -13.45061 -13.25996 -13.23004 -13.14834 -12.74000 -12.65046 -12.52151 -12.48620 -12.43029 -12.34185 -12.09599 -11.66158 -11.60399 -11.52034 -11.27095 -11.11015 -10.59416 -10.54208 -10.32759 -10.14951 -9.51135 -8.18330 -6.29592 -1.19146 -0.04419 0.33507 0.41803 1.42460 1.43865 1.54696 1.62405 2.09479 2.32841 2.42762 2.97264 3.15325 3.33042 3.37146 3.73531 3.95946 3.97807 4.04648 4.10419 4.16751 4.19811 4.24592 4.33336 4.45205 4.57133 4.57695 4.66481 4.70579 4.86174 4.91346 4.97202 4.98205 5.00167 5.09427 5.16367 5.18010 5.29898 5.46861 5.47848 5.55855 5.58572 5.72536 5.85430 5.92260 6.23975 6.56069 6.87176 6.95548 7.39719 7.52804 8.93741 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.025689 B = 0.001826 C = 0.001727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.687795 B =15329.030620 C =16212.831641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.625 5.625 3 C 0.156 3.844 4 C -0.107 4.107 5 C -0.023 4.023 6 C -0.124 4.124 7 C -0.050 4.050 8 C -0.112 4.112 9 C -0.058 4.058 10 C -0.065 4.065 11 N 0.033 4.967 12 O -0.194 6.194 13 O -0.166 6.166 14 C 0.697 3.303 15 O -0.634 6.634 16 N -0.731 5.731 17 C 0.150 3.850 18 C -0.101 4.101 19 C 0.024 3.976 20 C -0.540 4.540 21 H 0.066 0.934 22 C -0.004 4.004 23 N -0.935 5.935 24 Si 0.967 3.033 25 H -0.273 1.273 26 H -0.285 1.285 27 H -0.260 1.260 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.098 0.902 35 H 0.151 0.849 36 H 0.177 0.823 37 H 0.183 0.817 38 H 0.163 0.837 39 H 0.410 0.590 40 H 0.046 0.954 41 H 0.048 0.952 42 H 0.067 0.933 43 H 0.067 0.933 44 H -0.008 1.008 45 H -0.007 1.007 46 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.896 33.819 3.461 34.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.361 5.361 3 C 0.032 3.968 4 C -0.146 4.146 5 C -0.025 4.025 6 C -0.143 4.143 7 C -0.068 4.068 8 C -0.130 4.130 9 C -0.077 4.077 10 C -0.148 4.148 11 N 0.545 4.455 12 O -0.403 6.403 13 O -0.381 6.381 14 C 0.398 3.602 15 O -0.516 6.516 16 N -0.388 5.388 17 C 0.025 3.975 18 C -0.139 4.139 19 C -0.014 4.014 20 C -0.578 4.578 21 H 0.085 0.915 22 C -0.202 4.202 23 N -0.575 5.575 24 Si 0.792 3.208 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.185 1.185 28 H 0.086 0.914 29 H 0.096 0.904 30 H 0.113 0.887 31 H 0.103 0.897 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.117 0.883 35 H 0.169 0.831 36 H 0.194 0.806 37 H 0.200 0.800 38 H 0.181 0.819 39 H 0.248 0.752 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.011 0.989 45 H 0.011 0.989 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.510 33.706 3.535 33.983 hybrid contribution -1.153 -1.177 -0.049 1.649 sum 1.357 32.529 3.485 32.743 Atomic orbital electron populations 1.22019 0.77328 1.04604 1.03111 1.46971 1.07835 1.03693 1.77609 1.21071 0.96834 0.83711 0.95146 1.21297 1.01258 0.92762 0.99248 1.19786 0.95132 0.92861 0.94724 1.21503 0.91353 1.01182 1.00239 1.22109 1.02899 0.91043 0.90719 1.21692 0.91766 1.00970 0.98576 1.21390 0.95893 0.96317 0.94149 1.21176 0.78447 0.97716 1.17488 1.43885 1.04392 1.00001 0.97223 1.94523 1.68891 1.21324 1.55515 1.94431 1.70823 1.19828 1.52979 1.16115 0.84971 0.81279 0.77792 1.90855 1.13521 1.87025 1.60210 1.45218 1.10547 1.04016 1.78994 1.21081 0.94552 0.81355 1.00474 1.21592 0.97510 0.92707 1.02064 1.18937 0.95159 0.92138 0.95123 1.21682 0.93885 0.91865 1.50387 0.91539 1.26029 0.97039 1.02277 0.94837 1.70109 1.14732 1.20936 1.51710 0.85411 0.78957 0.78018 0.78425 1.19861 1.21041 1.18452 0.91365 0.90387 0.88728 0.89701 0.91567 0.90881 0.88350 0.83085 0.80566 0.79964 0.81945 0.75200 0.93520 0.93403 0.91411 0.91440 0.98921 0.98867 0.92833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.20 10.20 127.77 1.30 2.51 16 2 N -0.63 -14.95 2.87 -864.93 -2.48 -17.43 16 3 C 0.16 3.44 4.89 86.38 0.42 3.86 16 4 C -0.11 -2.13 4.93 29.85 0.15 -1.98 16 5 C -0.02 -0.37 5.13 -19.86 -0.10 -0.48 16 6 C -0.12 -1.46 9.67 22.27 0.22 -1.25 16 7 C -0.05 -0.28 10.05 22.27 0.22 -0.06 16 8 C -0.11 -0.53 10.05 22.27 0.22 -0.31 16 9 C -0.06 -0.60 9.56 22.27 0.21 -0.39 16 10 C -0.06 -1.06 6.83 36.38 0.25 -0.81 16 11 N 0.03 0.69 4.45 -46.47 -0.21 0.49 16 12 O -0.19 -4.38 18.46 18.88 0.35 -4.03 16 13 O -0.17 -3.62 12.36 18.89 0.23 -3.39 16 14 C 0.70 22.08 8.28 179.05 1.48 23.56 16 15 O -0.63 -25.15 15.92 -3.97 -0.06 -25.21 16 16 N -0.73 -21.73 5.42 -478.52 -2.59 -24.33 16 17 C 0.15 5.49 5.67 86.38 0.49 5.98 16 18 C -0.10 -3.94 5.27 30.59 0.16 -3.78 16 19 C 0.02 1.27 4.97 29.85 0.15 1.42 16 20 C -0.54 -30.28 9.11 25.60 0.23 -30.05 16 21 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 22 C 0.00 -0.24 5.46 84.66 0.46 0.22 16 23 N -0.93 -57.27 13.29 21.45 0.28 -56.98 16 24 Si 0.97 43.98 29.54 68.60 2.03 46.00 16 25 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 26 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 27 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 28 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.08 1.15 6.37 -2.38 -0.02 1.13 16 30 H 0.09 1.46 6.89 -2.39 -0.02 1.44 16 31 H 0.08 1.72 6.51 -2.39 -0.02 1.70 16 32 H 0.07 1.67 7.42 -2.39 -0.02 1.65 16 33 H 0.07 1.64 8.02 -2.38 -0.02 1.62 16 34 H 0.10 2.02 5.95 -2.39 -0.01 2.01 16 35 H 0.15 1.70 8.05 -2.91 -0.02 1.68 16 36 H 0.18 -0.14 8.06 -2.91 -0.02 -0.17 16 37 H 0.18 -0.43 8.06 -2.91 -0.02 -0.45 16 38 H 0.16 1.27 7.62 -2.91 -0.02 1.25 16 39 H 0.41 9.58 6.20 -92.71 -0.58 9.01 16 40 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 43 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 44 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 45 H -0.01 -0.40 8.14 -2.38 -0.02 -0.42 16 46 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -76.69 385.91 3.84 -72.85 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: 0.43 Total: 13.60 kcal Atomic # 6 Polarization: -7.44 SS G_CDS: 5.87 Total: -1.57 kcal Atomic # 7 Polarization: -93.25 SS G_CDS: -5.00 Total: -98.26 kcal Atomic # 8 Polarization: -33.15 SS G_CDS: 0.52 Total: -32.63 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.00 kcal Total: -76.69 3.84 -72.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344762022.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.367 kcal (2) G-P(sol) polarization free energy of solvation -76.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds