Wall clock time and date at job start Tue Mar 31 2020 18:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 114.00276 * 2 1 4 4 C 1.52995 * 109.47235 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47683 * 64.99342 * 4 3 2 6 6 C 1.34778 * 119.99872 * 180.02562 * 5 4 3 7 7 O 1.21544 * 120.00150 * 359.97438 * 6 5 4 8 8 C 1.47860 * 119.99700 * 180.02562 * 6 5 4 9 9 C 1.39616 * 120.11113 * 359.97398 * 8 6 5 10 10 C 1.37976 * 119.99591 * 179.97438 * 9 8 6 11 11 C 1.38258 * 120.22103 * 0.06059 * 10 9 8 12 12 C 1.38943 * 120.22673 * 359.96396 * 11 10 9 13 13 N 1.39973 * 120.00108 * 180.02562 * 12 11 10 14 14 C 1.34774 * 120.00238 * 144.88764 * 13 12 11 15 15 O 1.21593 * 119.99545 * 4.57979 * 14 13 12 16 16 N 1.34777 * 120.00296 * 184.58414 * 14 13 12 17 17 C 1.46495 * 119.99827 * 359.97438 * 16 14 13 18 18 C 1.46503 * 119.99852 * 179.97438 * 16 14 13 19 19 C 1.50697 * 109.46887 * 90.00376 * 18 16 14 20 20 H 1.08004 * 119.99968 * 359.97438 * 19 18 16 21 21 C 1.37874 * 120.00083 * 179.97438 * 19 18 16 22 22 N 1.31522 * 120.00112 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00253 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47131 * 60.00047 * 23 21 19 25 25 H 1.48500 * 109.47484 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47114 * 299.99875 * 23 21 19 27 27 C 1.38631 * 119.99651 * 359.97438 * 12 11 10 28 28 H 1.08997 * 109.47410 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47281 * 300.00964 * 1 2 3 30 30 H 1.09011 * 109.46546 * 60.00635 * 1 2 3 31 31 H 1.08996 * 109.47059 * 59.99401 * 3 2 1 32 32 H 1.09004 * 109.46280 * 299.99260 * 3 2 1 33 33 H 1.09010 * 109.46680 * 304.99152 * 4 3 2 34 34 H 1.09000 * 109.47101 * 184.99830 * 4 3 2 35 35 H 0.97002 * 119.99853 * 0.02562 * 5 4 3 36 36 H 1.08000 * 120.00173 * 0.04360 * 9 8 6 37 37 H 1.08000 * 119.89142 * 180.02562 * 10 9 8 38 38 H 1.08003 * 119.89060 * 179.97438 * 11 10 9 39 39 H 0.96995 * 120.00047 * 324.87523 * 13 12 11 40 40 H 1.09011 * 109.46910 * 89.99956 * 17 16 14 41 41 H 1.08996 * 109.47582 * 209.99602 * 17 16 14 42 42 H 1.08995 * 109.47473 * 330.00658 * 17 16 14 43 43 H 1.09002 * 109.46458 * 210.00220 * 18 16 14 44 44 H 1.08999 * 109.47250 * 329.99997 * 18 16 14 45 45 H 0.96998 * 120.00164 * 180.02562 * 22 21 19 46 46 H 1.08008 * 120.10850 * 179.74771 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9758 0.5642 -1.2526 6 6 5.2884 0.3554 -1.4760 7 8 6.1069 0.6822 -0.6390 8 6 5.7328 -0.2702 -2.7399 9 6 4.7946 -0.6460 -3.7032 10 6 5.2120 -1.2292 -4.8819 11 6 6.5580 -1.4446 -5.1134 12 6 7.4995 -1.0746 -4.1609 13 7 8.8609 -1.2944 -4.4003 14 6 9.7754 -0.4134 -3.9488 15 8 9.4259 0.5276 -3.2626 16 7 11.0773 -0.5754 -4.2578 17 6 11.4983 -1.7094 -5.0841 18 6 12.0712 0.3827 -3.7674 19 6 12.5920 -0.0746 -2.4293 20 1 12.2196 -0.9874 -1.9881 21 6 13.5440 0.6722 -1.7682 22 7 13.9979 1.7834 -2.3057 23 14 14.1891 0.1057 -0.1092 24 1 14.8186 -1.2315 -0.2532 25 1 15.1967 1.0767 0.3879 26 1 13.0645 0.0220 0.8569 27 6 7.0904 -0.4869 -2.9738 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5140 0.8899 30 1 -0.3633 0.5138 -0.8902 31 1 1.6886 1.8464 0.8899 32 1 1.6887 1.8462 -0.8901 33 1 3.8514 0.5682 0.8411 34 1 3.9785 2.1765 0.0889 35 1 3.3226 0.3038 -1.9208 36 1 3.7424 -0.4793 -3.5261 37 1 4.4849 -1.5188 -5.6261 38 1 6.8787 -1.9018 -6.0378 39 1 9.1463 -2.0809 -4.8911 40 1 11.4725 -1.4223 -6.1354 41 1 12.5128 -2.0005 -4.8119 42 1 10.8229 -2.5490 -4.9203 43 1 12.8966 0.4449 -4.4766 44 1 11.6086 1.3639 -3.6612 45 1 14.6679 2.3086 -1.8408 46 1 7.8205 -0.2023 -2.2304 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352289767.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:31 Heat of formation + Delta-G solvation = -66.222358 kcal Electronic energy + Delta-G solvation = -28237.451949 eV Core-core repulsion = 24128.126598 eV Total energy + Delta-G solvation = -4109.325351 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.48683 -39.64494 -38.43148 -37.86072 -35.05608 -34.81616 -34.34904 -32.51843 -31.33564 -30.13076 -29.19982 -27.60896 -26.72124 -25.77735 -24.28146 -23.41524 -22.48557 -21.97533 -20.50989 -19.45027 -18.40043 -17.25816 -17.08174 -16.73048 -16.49600 -16.13161 -16.04321 -15.69050 -15.08153 -15.05490 -14.89656 -14.70025 -14.32811 -13.90524 -13.66642 -13.54342 -13.29422 -13.09612 -12.83369 -12.57607 -12.26002 -12.19833 -12.14545 -11.91520 -11.81339 -11.61680 -11.44807 -11.14856 -10.88164 -10.52140 -10.22273 -10.17730 -10.07809 -9.82383 -9.62824 -9.26039 -9.18061 -8.82283 -8.38155 -8.05438 -7.59614 -5.99456 -4.04056 0.91331 1.45821 2.91722 3.01876 3.20316 3.32178 3.37037 3.41582 3.46652 3.77184 4.08223 4.41390 4.49996 4.55749 4.67364 4.76653 4.82886 4.87933 4.91385 4.98291 5.07814 5.21340 5.23016 5.34702 5.38615 5.45364 5.52404 5.57324 5.66519 5.84298 5.92502 6.11745 6.27751 6.31322 6.35801 6.47820 6.64618 6.66803 6.81662 7.19187 7.36116 7.45812 7.51823 7.67300 7.97853 8.26756 8.27021 8.56979 8.95970 9.24015 9.61143 11.08453 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012644 B = 0.002617 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2213.904737 B =10697.075588 C =12492.159909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.389 6.389 3 C 0.048 3.952 4 C 0.122 3.878 5 N -0.726 5.726 6 C 0.558 3.442 7 O -0.523 6.523 8 C -0.118 4.118 9 C -0.115 4.115 10 C -0.109 4.109 11 C -0.131 4.131 12 C 0.173 3.827 13 N -0.697 5.697 14 C 0.695 3.305 15 O -0.562 6.562 16 N -0.611 5.611 17 C 0.084 3.916 18 C 0.260 3.740 19 C -0.527 4.527 20 H 0.057 0.943 21 C 0.061 3.939 22 N -0.895 5.895 23 Si 0.898 3.102 24 H -0.277 1.277 25 H -0.286 1.286 26 H -0.275 1.275 27 C -0.060 4.060 28 H 0.087 0.913 29 H 0.042 0.958 30 H 0.042 0.958 31 H 0.068 0.932 32 H 0.058 0.942 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.401 0.599 36 H 0.121 0.879 37 H 0.128 0.872 38 H 0.127 0.873 39 H 0.403 0.597 40 H 0.045 0.955 41 H 0.079 0.921 42 H 0.049 0.951 43 H 0.035 0.965 44 H 0.046 0.954 45 H 0.264 0.736 46 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.217 -6.940 -5.135 27.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.308 6.308 3 C -0.029 4.029 4 C -0.002 4.002 5 N -0.380 5.380 6 C 0.345 3.655 7 O -0.399 6.399 8 C -0.122 4.122 9 C -0.134 4.134 10 C -0.128 4.128 11 C -0.153 4.153 12 C 0.077 3.923 13 N -0.347 5.347 14 C 0.396 3.604 15 O -0.437 6.437 16 N -0.347 5.347 17 C -0.060 4.060 18 C 0.140 3.860 19 C -0.566 4.566 20 H 0.075 0.925 21 C -0.141 4.141 22 N -0.534 5.534 23 Si 0.726 3.274 24 H -0.203 1.203 25 H -0.212 1.212 26 H -0.201 1.201 27 C -0.081 4.081 28 H 0.105 0.895 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.096 0.904 34 H 0.104 0.896 35 H 0.237 0.763 36 H 0.139 0.861 37 H 0.146 0.854 38 H 0.145 0.855 39 H 0.240 0.760 40 H 0.064 0.936 41 H 0.098 0.902 42 H 0.068 0.932 43 H 0.053 0.947 44 H 0.064 0.936 45 H 0.073 0.927 46 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -25.467 -5.963 -3.973 26.456 hybrid contribution 0.018 -0.612 0.276 0.672 sum -25.449 -6.575 -3.697 26.543 Atomic orbital electron populations 1.22767 0.80815 1.02971 1.00042 1.87953 1.19860 1.27507 1.95443 1.22840 0.93205 0.85368 1.01451 1.21375 0.91600 0.99561 0.87662 1.45769 1.07497 1.64156 1.20627 1.18322 0.81989 0.78440 0.86706 1.90843 1.52638 1.50258 1.46164 1.19715 0.94067 1.03539 0.94909 1.21109 0.98435 0.99783 0.94113 1.20746 0.95039 0.99809 0.97200 1.21056 0.92913 1.03352 0.97973 1.17470 0.83003 0.98791 0.93066 1.42988 1.03751 1.27007 1.60943 1.15971 0.81242 0.82441 0.80721 1.90939 1.78810 1.32645 1.41300 1.47511 1.05213 1.28943 1.52991 1.21594 1.01738 0.88475 0.94232 1.19267 0.84776 0.87852 0.94062 1.21407 1.22182 1.08866 1.04151 0.92511 1.24923 0.96389 0.94782 0.97967 1.69923 1.30166 1.14427 1.38898 0.86553 0.78562 0.78201 0.84091 1.20313 1.21189 1.20063 1.21624 0.95090 0.95251 0.96184 0.89484 0.93979 0.93970 0.91436 0.92424 0.90392 0.89639 0.76336 0.86098 0.85373 0.85501 0.76018 0.93618 0.90217 0.93202 0.94717 0.93603 0.92671 0.82284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.39 -3.22 10.65 -35.23 -0.38 -3.60 16 3 C 0.05 0.33 6.07 37.15 0.23 0.56 16 4 C 0.12 1.21 6.06 -4.04 -0.02 1.18 16 5 N -0.73 -8.24 5.45 -61.25 -0.33 -8.57 16 6 C 0.56 8.90 7.77 -12.32 -0.10 8.81 16 7 O -0.52 -10.82 16.34 5.33 0.09 -10.74 16 8 C -0.12 -1.80 5.87 -104.99 -0.62 -2.42 16 9 C -0.11 -1.26 9.54 -39.16 -0.37 -1.64 16 10 C -0.11 -1.09 10.02 -39.67 -0.40 -1.49 16 11 C -0.13 -1.53 9.96 -39.31 -0.39 -1.92 16 12 C 0.17 2.74 6.30 -83.73 -0.53 2.21 16 13 N -0.70 -11.45 5.21 -14.25 -0.07 -11.52 16 14 C 0.69 15.22 8.12 -86.92 -0.71 14.52 16 15 O -0.56 -14.94 13.36 5.28 0.07 -14.87 16 16 N -0.61 -13.22 2.86 -188.74 -0.54 -13.76 16 17 C 0.08 1.30 10.24 59.84 0.61 1.91 16 18 C 0.26 6.92 5.16 -5.19 -0.03 6.89 16 19 C -0.53 -15.30 9.39 -34.44 -0.32 -15.63 16 20 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 21 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 22 N -0.90 -27.12 13.29 55.43 0.74 -26.38 16 23 Si 0.90 22.57 29.54 -169.99 -5.02 17.55 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 H -0.28 -7.04 7.11 56.52 0.40 -6.63 16 27 C -0.06 -1.10 8.23 -38.98 -0.32 -1.42 16 28 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.04 0.17 8.14 -51.92 -0.42 -0.26 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.08 0.88 8.14 -51.92 -0.42 0.46 16 34 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.40 3.46 6.50 -40.82 -0.27 3.19 16 36 H 0.12 0.92 6.40 -52.49 -0.34 0.59 16 37 H 0.13 0.86 8.06 -52.49 -0.42 0.43 16 38 H 0.13 1.12 8.06 -52.48 -0.42 0.70 16 39 H 0.40 5.08 6.52 -40.82 -0.27 4.81 16 40 H 0.05 0.60 8.14 -51.92 -0.42 0.18 16 41 H 0.08 1.27 8.07 -51.93 -0.42 0.85 16 42 H 0.05 0.61 6.30 -51.93 -0.33 0.28 16 43 H 0.03 0.92 8.07 -51.93 -0.42 0.50 16 44 H 0.05 1.38 7.42 -51.93 -0.39 1.00 16 45 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 46 H 0.16 3.64 5.82 -52.48 -0.31 3.34 16 LS Contribution 389.70 15.07 5.87 5.87 Total: -1.00 -38.55 389.70 -8.02 -46.57 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -6.50 Total: 4.91 kcal Atomic # 6 Polarization: 16.49 SS G_CDS: -1.95 Total: 14.54 kcal Atomic # 7 Polarization: -60.03 SS G_CDS: -0.21 Total: -60.24 kcal Atomic # 8 Polarization: -28.99 SS G_CDS: -0.22 Total: -29.21 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -38.55 -8.02 -46.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352289767.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.654 kcal (2) G-P(sol) polarization free energy of solvation -38.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds