Wall clock time and date at job start Tue Mar 31 2020 18:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 114.00276 * 2 1 4 4 C 1.52995 * 109.47235 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47683 * 64.99342 * 4 3 2 6 6 C 1.34778 * 119.99872 * 180.02562 * 5 4 3 7 7 O 1.21544 * 120.00150 * 359.97438 * 6 5 4 8 8 C 1.47860 * 119.99700 * 180.02562 * 6 5 4 9 9 C 1.39616 * 120.11113 * 359.97398 * 8 6 5 10 10 C 1.37976 * 119.99591 * 179.97438 * 9 8 6 11 11 C 1.38258 * 120.22103 * 0.06059 * 10 9 8 12 12 C 1.38943 * 120.22673 * 359.96396 * 11 10 9 13 13 N 1.39973 * 120.00108 * 180.02562 * 12 11 10 14 14 C 1.34774 * 120.00238 * 144.88764 * 13 12 11 15 15 O 1.21593 * 119.99545 * 4.57979 * 14 13 12 16 16 N 1.34777 * 120.00296 * 184.58414 * 14 13 12 17 17 C 1.46495 * 119.99827 * 359.97438 * 16 14 13 18 18 C 1.46503 * 119.99852 * 179.97438 * 16 14 13 19 19 C 1.50697 * 109.46887 * 90.00376 * 18 16 14 20 20 H 1.08004 * 119.99968 * 359.97438 * 19 18 16 21 21 C 1.37874 * 120.00083 * 179.97438 * 19 18 16 22 22 N 1.31522 * 120.00112 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00253 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47131 * 60.00047 * 23 21 19 25 25 H 1.48500 * 109.47484 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47114 * 299.99875 * 23 21 19 27 27 C 1.38631 * 119.99651 * 359.97438 * 12 11 10 28 28 H 1.08997 * 109.47410 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47281 * 300.00964 * 1 2 3 30 30 H 1.09011 * 109.46546 * 60.00635 * 1 2 3 31 31 H 1.08996 * 109.47059 * 59.99401 * 3 2 1 32 32 H 1.09004 * 109.46280 * 299.99260 * 3 2 1 33 33 H 1.09010 * 109.46680 * 304.99152 * 4 3 2 34 34 H 1.09000 * 109.47101 * 184.99830 * 4 3 2 35 35 H 0.97002 * 119.99853 * 0.02562 * 5 4 3 36 36 H 1.08000 * 120.00173 * 0.04360 * 9 8 6 37 37 H 1.08000 * 119.89142 * 180.02562 * 10 9 8 38 38 H 1.08003 * 119.89060 * 179.97438 * 11 10 9 39 39 H 0.96995 * 120.00047 * 324.87523 * 13 12 11 40 40 H 1.09011 * 109.46910 * 89.99956 * 17 16 14 41 41 H 1.08996 * 109.47582 * 209.99602 * 17 16 14 42 42 H 1.08995 * 109.47473 * 330.00658 * 17 16 14 43 43 H 1.09002 * 109.46458 * 210.00220 * 18 16 14 44 44 H 1.08999 * 109.47250 * 329.99997 * 18 16 14 45 45 H 0.96998 * 120.00164 * 180.02562 * 22 21 19 46 46 H 1.08008 * 120.10850 * 179.74771 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9758 0.5642 -1.2526 6 6 5.2884 0.3554 -1.4760 7 8 6.1069 0.6822 -0.6390 8 6 5.7328 -0.2702 -2.7399 9 6 4.7946 -0.6460 -3.7032 10 6 5.2120 -1.2292 -4.8819 11 6 6.5580 -1.4446 -5.1134 12 6 7.4995 -1.0746 -4.1609 13 7 8.8609 -1.2944 -4.4003 14 6 9.7754 -0.4134 -3.9488 15 8 9.4259 0.5276 -3.2626 16 7 11.0773 -0.5754 -4.2578 17 6 11.4983 -1.7094 -5.0841 18 6 12.0712 0.3827 -3.7674 19 6 12.5920 -0.0746 -2.4293 20 1 12.2196 -0.9874 -1.9881 21 6 13.5440 0.6722 -1.7682 22 7 13.9979 1.7834 -2.3057 23 14 14.1891 0.1057 -0.1092 24 1 14.8186 -1.2315 -0.2532 25 1 15.1967 1.0767 0.3879 26 1 13.0645 0.0220 0.8569 27 6 7.0904 -0.4869 -2.9738 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5140 0.8899 30 1 -0.3633 0.5138 -0.8902 31 1 1.6886 1.8464 0.8899 32 1 1.6887 1.8462 -0.8901 33 1 3.8514 0.5682 0.8411 34 1 3.9785 2.1765 0.0889 35 1 3.3226 0.3038 -1.9208 36 1 3.7424 -0.4793 -3.5261 37 1 4.4849 -1.5188 -5.6261 38 1 6.8787 -1.9018 -6.0378 39 1 9.1463 -2.0809 -4.8911 40 1 11.4725 -1.4223 -6.1354 41 1 12.5128 -2.0005 -4.8119 42 1 10.8229 -2.5490 -4.9203 43 1 12.8966 0.4449 -4.4766 44 1 11.6086 1.3639 -3.6612 45 1 14.6679 2.3086 -1.8408 46 1 7.8205 -0.2023 -2.2304 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352289767.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:31 Heat of formation + Delta-G solvation = -96.838943 kcal Electronic energy + Delta-G solvation = -28238.779584 eV Core-core repulsion = 24128.126598 eV Total energy + Delta-G solvation = -4110.652986 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.81767 -40.98096 -39.37309 -38.79378 -36.75205 -36.01322 -35.74814 -34.64326 -32.37460 -31.19002 -30.34192 -29.36831 -27.37765 -27.18555 -25.30526 -25.20521 -23.42737 -23.23805 -21.68835 -20.98190 -19.63404 -18.78721 -18.65790 -17.75329 -17.54067 -17.46791 -16.99607 -16.70718 -16.62560 -16.37546 -16.11510 -15.86873 -15.55956 -15.29990 -14.91713 -14.71582 -14.63778 -14.36852 -14.13093 -13.90770 -13.55407 -13.46962 -13.21190 -13.11860 -12.88793 -12.80081 -12.68672 -12.62662 -12.50959 -12.19745 -12.14976 -11.78380 -11.50182 -11.13520 -10.95835 -10.65966 -10.64193 -10.30079 -9.87369 -9.60247 -9.06639 -8.23964 -6.38594 -0.16146 0.37640 1.32498 1.38654 1.44846 1.66148 1.79799 2.06666 2.18789 2.37376 2.78346 2.92021 3.03190 3.07121 3.68659 3.88462 3.98406 4.12614 4.15630 4.25295 4.27617 4.41049 4.44596 4.54863 4.57687 4.59216 4.62147 4.65741 4.78658 4.83221 4.92911 4.93881 4.97174 5.16851 5.30026 5.31866 5.33973 5.39682 5.50991 5.53713 5.76948 6.00116 6.03865 6.06713 6.19085 6.46842 6.69327 7.03246 7.15010 7.28113 7.61059 8.82288 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012644 B = 0.002617 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2213.904737 B =10697.075588 C =12492.159909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.415 6.415 3 C 0.058 3.942 4 C 0.115 3.885 5 N -0.702 5.702 6 C 0.550 3.450 7 O -0.590 6.590 8 C -0.138 4.138 9 C -0.093 4.093 10 C -0.092 4.092 11 C -0.108 4.108 12 C 0.142 3.858 13 N -0.674 5.674 14 C 0.688 3.312 15 O -0.622 6.622 16 N -0.620 5.620 17 C 0.078 3.922 18 C 0.276 3.724 19 C -0.544 4.544 20 H 0.049 0.951 21 C 0.008 3.992 22 N -0.926 5.926 23 Si 0.965 3.035 24 H -0.256 1.256 25 H -0.274 1.274 26 H -0.286 1.286 27 C -0.101 4.101 28 H 0.092 0.908 29 H 0.049 0.951 30 H 0.057 0.943 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.057 0.943 34 H 0.081 0.919 35 H 0.418 0.582 36 H 0.164 0.836 37 H 0.184 0.816 38 H 0.168 0.832 39 H 0.423 0.577 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.087 0.913 43 H 0.034 0.966 44 H -0.004 1.004 45 H 0.268 0.732 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.579 -9.332 -7.588 31.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.335 6.335 3 C -0.019 4.019 4 C -0.009 4.009 5 N -0.355 5.355 6 C 0.338 3.662 7 O -0.471 6.471 8 C -0.142 4.142 9 C -0.112 4.112 10 C -0.110 4.110 11 C -0.129 4.129 12 C 0.047 3.953 13 N -0.326 5.326 14 C 0.390 3.610 15 O -0.502 6.502 16 N -0.354 5.354 17 C -0.064 4.064 18 C 0.154 3.846 19 C -0.583 4.583 20 H 0.067 0.933 21 C -0.191 4.191 22 N -0.565 5.565 23 Si 0.789 3.211 24 H -0.181 1.181 25 H -0.199 1.199 26 H -0.212 1.212 27 C -0.123 4.123 28 H 0.111 0.889 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.103 0.897 32 H 0.098 0.902 33 H 0.076 0.924 34 H 0.099 0.901 35 H 0.256 0.744 36 H 0.181 0.819 37 H 0.201 0.799 38 H 0.186 0.814 39 H 0.264 0.736 40 H 0.095 0.905 41 H 0.092 0.908 42 H 0.105 0.895 43 H 0.052 0.948 44 H 0.015 0.985 45 H 0.077 0.923 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -28.912 -8.439 -6.500 30.812 hybrid contribution 0.869 0.112 0.979 1.314 sum -28.043 -8.327 -5.522 29.770 Atomic orbital electron populations 1.22936 0.79104 1.03802 1.01190 1.87907 1.21735 1.28116 1.95711 1.22784 0.90301 0.85406 1.03379 1.21511 0.94354 0.98704 0.86302 1.45625 1.06119 1.62484 1.21312 1.18708 0.82891 0.77970 0.86615 1.90803 1.54625 1.53346 1.48328 1.19753 0.93708 1.04891 0.95869 1.21582 0.99456 0.97233 0.92932 1.21407 0.95190 0.97151 0.97259 1.21518 0.92701 1.00964 0.97728 1.17746 0.83070 1.00808 0.93674 1.42549 1.03462 1.26410 1.60209 1.16212 0.81854 0.82621 0.80334 1.90914 1.79931 1.35484 1.43840 1.47366 1.04539 1.29821 1.53702 1.21923 1.02262 0.87473 0.94746 1.18697 0.85198 0.87059 0.93609 1.21677 1.22434 1.08786 1.05393 0.93293 1.25829 0.96640 0.94835 1.01799 1.70032 1.30648 1.15364 1.40506 0.85514 0.77737 0.78949 0.78877 1.18054 1.19898 1.21174 1.21277 0.95600 0.98696 0.96711 0.88913 0.93210 0.92425 0.89675 0.90219 0.92415 0.90067 0.74363 0.81900 0.79873 0.81439 0.73636 0.90543 0.90806 0.89501 0.94800 0.98545 0.92326 0.88695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 113.37 1.25 1.44 16 2 O -0.41 -6.03 10.65 -148.98 -1.59 -7.61 16 3 C 0.06 0.69 6.07 71.98 0.44 1.12 16 4 C 0.11 2.32 6.06 86.38 0.52 2.85 16 5 N -0.70 -15.77 5.45 -465.96 -2.54 -18.31 16 6 C 0.55 18.68 7.77 86.79 0.67 19.36 16 7 O -0.59 -27.26 16.34 -3.85 -0.06 -27.32 16 8 C -0.14 -4.30 5.87 -20.10 -0.12 -4.42 16 9 C -0.09 -1.70 9.54 22.54 0.21 -1.48 16 10 C -0.09 -1.30 10.02 22.21 0.22 -1.08 16 11 C -0.11 -2.07 9.96 22.44 0.22 -1.84 16 12 C 0.14 4.47 6.30 38.10 0.24 4.71 16 13 N -0.67 -22.24 5.21 -317.27 -1.65 -23.89 16 14 C 0.69 31.92 8.12 179.06 1.45 33.37 16 15 O -0.62 -36.42 13.36 -4.01 -0.05 -36.47 16 16 N -0.62 -27.86 2.86 -869.31 -2.48 -30.35 16 17 C 0.08 2.33 10.24 127.77 1.31 3.63 16 18 C 0.28 15.65 5.16 85.63 0.44 16.09 16 19 C -0.54 -33.15 9.39 25.60 0.24 -32.91 16 20 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 21 C 0.01 0.49 5.46 84.65 0.46 0.95 16 22 N -0.93 -58.19 13.29 21.45 0.28 -57.90 16 23 Si 0.96 47.66 29.54 68.60 2.03 49.68 16 24 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 25 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16 26 H -0.29 -14.52 7.11 99.48 0.71 -13.81 16 27 C -0.10 -3.98 8.23 22.66 0.19 -3.80 16 28 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.05 0.30 8.14 -2.39 -0.02 0.28 16 30 H 0.06 0.26 8.14 -2.38 -0.02 0.24 16 31 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.08 0.62 8.14 -2.38 -0.02 0.60 16 33 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 34 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.42 6.18 6.50 -92.71 -0.60 5.57 16 36 H 0.16 1.57 6.40 -2.91 -0.02 1.55 16 37 H 0.18 0.81 8.06 -2.91 -0.02 0.78 16 38 H 0.17 1.87 8.06 -2.91 -0.02 1.85 16 39 H 0.42 9.81 6.52 -92.71 -0.60 9.20 16 40 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 41 H 0.07 2.31 8.07 -2.39 -0.02 2.29 16 42 H 0.09 1.91 6.30 -2.39 -0.02 1.90 16 43 H 0.03 1.90 8.07 -2.39 -0.02 1.88 16 44 H 0.00 -0.24 7.42 -2.39 -0.02 -0.25 16 45 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 46 H 0.09 4.99 5.82 -2.91 -0.02 4.97 16 Total: -1.00 -97.69 389.70 1.50 -96.19 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: -0.19 Total: 17.99 kcal Atomic # 6 Polarization: 30.23 SS G_CDS: 7.76 Total: 37.99 kcal Atomic # 7 Polarization: -124.05 SS G_CDS: -6.39 Total: -130.45 kcal Atomic # 8 Polarization: -69.71 SS G_CDS: -1.70 Total: -71.41 kcal Atomic # 14 Polarization: 47.66 SS G_CDS: 2.03 Total: 49.68 kcal Total: -97.69 1.50 -96.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352289767.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.647 kcal (2) G-P(sol) polarization free energy of solvation -97.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds