Wall clock time and date at job start Tue Mar 31 2020 19:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35669 * 116.99737 * 2 1 4 4 C 1.38806 * 119.64571 * 180.02562 * 3 2 1 5 5 C 1.38537 * 119.23323 * 179.78889 * 4 3 2 6 6 C 1.38575 * 118.54740 * 0.43736 * 5 4 3 7 7 C 1.50699 * 120.38028 * 179.80080 * 6 5 4 8 8 N 1.46497 * 109.47293 * 259.71909 * 7 6 5 9 9 C 1.34776 * 120.00194 * 180.02562 * 8 7 6 10 10 O 1.21582 * 120.00274 * 359.97438 * 9 8 7 11 11 N 1.34782 * 120.00034 * 180.02562 * 9 8 7 12 12 C 1.46495 * 120.00258 * 180.02562 * 11 9 8 13 13 C 1.52992 * 109.47269 * 184.79147 * 12 11 9 14 14 C 1.50694 * 115.55114 * 294.81128 * 13 12 11 15 15 H 1.08008 * 119.99906 * 95.20873 * 14 13 12 16 16 C 1.37875 * 120.00314 * 274.92789 * 14 13 12 17 17 N 1.31509 * 119.99913 * 355.42420 * 16 14 13 18 18 Si 1.86807 * 120.00040 * 175.41703 * 16 14 13 19 19 H 1.48494 * 109.47052 * 60.00642 * 18 16 14 20 20 H 1.48500 * 109.47055 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47106 * 300.00083 * 18 16 14 22 22 C 1.53003 * 117.49834 * 80.48431 * 13 12 11 23 23 C 1.53006 * 117.49908 * 149.14426 * 13 12 11 24 24 C 1.38756 * 119.23712 * 359.52098 * 6 5 4 25 25 O 1.35684 * 119.64827 * 180.25496 * 24 6 5 26 26 C 1.42899 * 116.99994 * 180.02562 * 25 24 6 27 27 N 1.32314 * 119.65452 * 0.02562 * 3 2 1 28 28 H 1.08995 * 109.46665 * 299.99586 * 1 2 3 29 29 H 1.08993 * 109.47357 * 59.99957 * 1 2 3 30 30 H 1.09008 * 109.46989 * 179.97438 * 1 2 3 31 31 H 1.07997 * 120.38441 * 359.97438 * 4 3 2 32 32 H 1.07997 * 120.72592 * 180.23438 * 5 4 3 33 33 H 1.09007 * 109.47472 * 139.71560 * 7 6 5 34 34 H 1.09003 * 109.47615 * 19.71966 * 7 6 5 35 35 H 0.97004 * 119.99607 * 359.97438 * 8 7 6 36 36 H 0.96999 * 119.99637 * 359.97438 * 11 9 8 37 37 H 1.09001 * 109.47395 * 64.78624 * 12 11 9 38 38 H 1.09007 * 109.47080 * 304.78945 * 12 11 9 39 39 H 0.97001 * 119.99960 * 184.99387 * 17 16 14 40 40 H 1.09003 * 117.50034 * 214.99852 * 22 13 12 41 41 H 1.09002 * 117.49971 * 0.02686 * 22 13 12 42 42 H 1.08996 * 117.49810 * 359.97342 * 23 13 12 43 43 H 1.08995 * 117.50078 * 144.97442 * 23 13 12 44 44 H 1.08997 * 109.47108 * 300.00001 * 26 25 24 45 45 H 1.08998 * 109.46533 * 59.99918 * 26 25 24 46 46 H 1.09000 * 109.46868 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 3.4315 1.2730 -0.0005 5 6 4.0515 2.5119 -0.0050 6 6 3.2593 3.6489 0.0005 7 6 3.8903 5.0174 0.0005 8 7 3.8766 5.5615 1.3606 9 6 4.3921 6.7829 1.6031 10 8 4.8688 7.4332 0.6931 11 7 4.3799 7.2833 2.8545 12 6 4.9397 8.6112 3.1180 13 6 4.9103 8.8877 4.6224 14 6 3.5386 8.9895 5.2379 15 1 3.0898 8.1241 5.7030 16 6 2.8587 10.1887 5.2125 17 7 3.4420 11.2652 4.7324 18 14 1.1090 10.2844 5.8598 19 1 1.0887 9.8909 7.2915 20 1 0.6052 11.6744 5.7209 21 1 0.2421 9.3640 5.0811 22 6 6.0236 8.2757 5.4750 23 6 6.0109 9.7812 5.1981 24 6 1.8784 3.5128 0.0002 25 8 1.0948 4.6204 0.0003 26 6 -0.3193 4.4147 0.0005 27 7 1.3175 2.3141 0.0005 28 1 -0.3632 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 4.0202 0.3676 -0.0005 32 1 5.1286 2.5898 -0.0093 33 1 3.3277 5.6770 -0.6604 34 1 4.9195 4.9430 -0.3507 35 1 3.4959 5.0429 2.0866 36 1 3.9999 6.7644 3.5806 37 1 4.3477 9.3647 2.5984 38 1 5.9692 8.6488 2.7617 39 1 2.9919 12.1231 4.7806 40 1 5.7639 7.9467 6.4812 41 1 6.7772 7.6764 4.9641 42 1 6.7562 10.1716 4.5051 43 1 5.7427 10.4428 6.0217 44 1 -0.6050 3.8540 -0.8895 45 1 -0.6047 3.8539 0.8905 46 1 -0.8268 5.3794 0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358136017.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:11 Heat of formation + Delta-G solvation = -39.564414 kcal Electronic energy + Delta-G solvation = -28595.272486 eV Core-core repulsion = 24487.103110 eV Total energy + Delta-G solvation = -4108.169376 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.29622 -39.40112 -39.07852 -37.49406 -36.71515 -34.75936 -33.18999 -32.44020 -31.92213 -30.90818 -28.18521 -27.50960 -26.36993 -25.52099 -24.58858 -23.27427 -22.24265 -21.12839 -20.20985 -19.33662 -19.19027 -18.22119 -17.77721 -16.70011 -16.44955 -16.35292 -15.82555 -15.57097 -15.29638 -15.03317 -14.83416 -14.60923 -14.09138 -13.93641 -13.77500 -13.71833 -13.38517 -13.24294 -12.79166 -12.54761 -12.32893 -12.24559 -11.87602 -11.78505 -11.62027 -11.51166 -10.97503 -10.94807 -10.92684 -10.52506 -10.20309 -10.19708 -10.11208 -9.67472 -9.42409 -8.99915 -8.76276 -8.45055 -8.41663 -8.18638 -7.90951 -6.04040 -4.13577 0.82119 0.95416 2.65249 2.85263 3.19900 3.28304 3.34276 3.35366 3.60570 3.88524 3.90566 4.37363 4.53767 4.61249 4.81007 4.92212 4.93267 4.93432 5.04616 5.06039 5.09000 5.23820 5.24005 5.37904 5.41459 5.43032 5.64785 5.83609 6.03323 6.06248 6.08918 6.39547 6.52914 6.54252 6.64724 6.75043 6.83395 6.91049 7.06345 7.16282 7.38534 7.41562 7.47137 7.51675 7.68532 7.84185 8.38067 8.73426 8.87417 9.28043 9.53135 11.03194 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013662 B = 0.002701 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.052257 B =10365.601223 C =11381.556682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.305 6.305 3 C 0.362 3.638 4 C -0.230 4.230 5 C 0.010 3.990 6 C -0.211 4.211 7 C 0.203 3.797 8 N -0.748 5.748 9 C 0.700 3.300 10 O -0.605 6.605 11 N -0.721 5.721 12 C 0.183 3.817 13 C 0.025 3.975 14 C -0.500 4.500 15 H 0.058 0.942 16 C 0.074 3.926 17 N -0.875 5.875 18 Si 0.890 3.110 19 H -0.278 1.278 20 H -0.287 1.287 21 H -0.277 1.277 22 C -0.211 4.211 23 C -0.142 4.142 24 C 0.378 3.622 25 O -0.291 6.291 26 C 0.040 3.960 27 N -0.596 5.596 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.097 0.903 31 H 0.145 0.855 32 H 0.152 0.848 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.392 0.608 36 H 0.396 0.604 37 H 0.064 0.936 38 H 0.037 0.963 39 H 0.262 0.738 40 H 0.076 0.924 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.086 0.914 44 H 0.057 0.943 45 H 0.059 0.941 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.514 -21.372 -9.654 23.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.212 6.212 3 C 0.184 3.816 4 C -0.251 4.251 5 C -0.015 4.015 6 C -0.215 4.215 7 C 0.078 3.922 8 N -0.404 5.404 9 C 0.399 3.601 10 O -0.485 6.485 11 N -0.374 5.374 12 C 0.059 3.941 13 C 0.024 3.976 14 C -0.537 4.537 15 H 0.076 0.924 16 C -0.130 4.130 17 N -0.511 5.511 18 Si 0.718 3.282 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.248 4.248 23 C -0.180 4.180 24 C 0.199 3.801 25 O -0.196 6.196 26 C -0.055 4.055 27 N -0.336 5.336 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.115 0.885 31 H 0.163 0.837 32 H 0.170 0.830 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.225 0.775 36 H 0.229 0.771 37 H 0.082 0.918 38 H 0.056 0.944 39 H 0.072 0.928 40 H 0.095 0.905 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.104 0.896 44 H 0.075 0.925 45 H 0.077 0.923 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -4.874 -20.565 -10.596 23.642 hybrid contribution -1.132 -0.342 1.078 1.600 sum -6.006 -20.907 -9.517 23.743 Atomic orbital electron populations 1.22874 0.77098 1.03067 1.02506 1.86266 1.23049 1.24387 1.87455 1.19442 0.89141 0.83358 0.89665 1.20906 0.91531 0.99655 1.13032 1.21229 1.00590 0.89684 0.89978 1.19826 0.90410 0.97374 1.13895 1.19563 0.99955 0.88482 0.84182 1.45108 1.66904 1.18435 1.09988 1.16012 0.79285 0.80865 0.83897 1.90865 1.53164 1.60313 1.44120 1.45143 1.64446 1.20676 1.07096 1.20836 0.95490 0.81163 0.96620 1.19041 0.90535 0.99156 0.88829 1.20304 0.99060 0.96369 1.37983 0.92364 1.24977 0.97655 0.95865 0.94545 1.69977 1.37920 0.98824 1.44331 0.86698 0.85161 0.77123 0.79213 1.20346 1.21284 1.20216 1.23010 1.03805 0.96830 1.01180 1.22465 1.01370 0.91179 1.03023 1.19261 0.88323 0.83747 0.88755 1.86404 1.19582 1.26947 1.86666 1.22904 0.77344 1.03204 1.02097 1.66834 1.41494 0.98434 1.26802 0.92207 0.92305 0.88506 0.83714 0.83000 0.90693 0.90968 0.77487 0.77083 0.91780 0.94423 0.92840 0.90510 0.91720 0.91795 0.89559 0.92453 0.92268 0.88228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.38 101.05 1.05 1.32 16 2 O -0.31 -2.91 10.47 -18.71 -0.20 -3.11 16 3 C 0.36 3.79 7.48 -17.13 -0.13 3.67 16 4 C -0.23 -2.05 10.04 -39.26 -0.39 -2.44 16 5 C 0.01 0.09 9.80 -39.35 -0.39 -0.29 16 6 C -0.21 -2.35 5.28 -104.31 -0.55 -2.90 16 7 C 0.20 2.66 5.48 -5.20 -0.03 2.64 16 8 N -0.75 -11.18 5.55 -66.41 -0.37 -11.54 16 9 C 0.70 13.69 8.57 -86.91 -0.74 12.95 16 10 O -0.60 -14.10 16.34 5.29 0.09 -14.01 16 11 N -0.72 -14.44 5.48 -65.23 -0.36 -14.80 16 12 C 0.18 4.24 5.50 -4.05 -0.02 4.22 16 13 C 0.03 0.60 1.47 -155.66 -0.23 0.37 16 14 C -0.50 -12.96 8.59 -34.44 -0.30 -13.26 16 15 H 0.06 1.48 7.82 -52.48 -0.41 1.07 16 16 C 0.07 1.97 5.43 -17.82 -0.10 1.87 16 17 N -0.87 -24.45 12.65 55.43 0.70 -23.75 16 18 Si 0.89 20.72 29.54 -169.99 -5.02 15.70 16 19 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 20 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 22 C -0.21 -4.45 9.96 -26.69 -0.27 -4.72 16 23 C -0.14 -3.30 9.14 -26.69 -0.24 -3.54 16 24 C 0.38 4.54 7.46 -17.14 -0.13 4.41 16 25 O -0.29 -3.66 9.72 -18.75 -0.18 -3.84 16 26 C 0.04 0.38 10.38 101.05 1.05 1.42 16 27 N -0.60 -6.74 8.06 -13.40 -0.11 -6.84 16 28 H 0.06 0.42 8.10 -51.93 -0.42 0.00 16 29 H 0.06 0.40 8.10 -51.93 -0.42 -0.02 16 30 H 0.10 0.42 8.14 -51.92 -0.42 -0.01 16 31 H 0.15 0.99 8.06 -52.49 -0.42 0.56 16 32 H 0.15 0.97 8.06 -52.49 -0.42 0.55 16 33 H 0.07 1.11 7.86 -51.92 -0.41 0.70 16 34 H 0.07 0.90 8.03 -51.93 -0.42 0.49 16 35 H 0.39 5.15 8.48 -40.82 -0.35 4.80 16 36 H 0.40 7.27 8.34 -40.82 -0.34 6.93 16 37 H 0.06 1.70 8.14 -51.93 -0.42 1.28 16 38 H 0.04 0.87 8.09 -51.92 -0.42 0.45 16 39 H 0.26 7.05 8.32 -40.82 -0.34 6.72 16 40 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 41 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 42 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 43 H 0.09 2.14 8.14 -51.93 -0.42 1.71 16 44 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 45 H 0.06 0.54 8.10 -51.93 -0.42 0.12 16 46 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 396.57 15.07 5.98 5.98 Total: -1.00 -32.15 396.57 -7.85 -40.01 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: -6.97 Total: 10.51 kcal Atomic # 6 Polarization: 7.13 SS G_CDS: -1.42 Total: 5.71 kcal Atomic # 7 Polarization: -56.80 SS G_CDS: -0.13 Total: -56.94 kcal Atomic # 8 Polarization: -20.67 SS G_CDS: -0.29 Total: -20.96 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.15 -7.85 -40.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358136017.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.441 kcal (2) G-P(sol) polarization free energy of solvation -32.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds