Wall clock time and date at job start Tue Mar 31 2020 19:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35669 * 116.99737 * 2 1 4 4 C 1.38806 * 119.64571 * 180.02562 * 3 2 1 5 5 C 1.38537 * 119.23323 * 179.78889 * 4 3 2 6 6 C 1.38575 * 118.54740 * 0.43736 * 5 4 3 7 7 C 1.50699 * 120.38028 * 179.80080 * 6 5 4 8 8 N 1.46497 * 109.47293 * 259.71909 * 7 6 5 9 9 C 1.34776 * 120.00194 * 180.02562 * 8 7 6 10 10 O 1.21582 * 120.00274 * 359.97438 * 9 8 7 11 11 N 1.34782 * 120.00034 * 180.02562 * 9 8 7 12 12 C 1.46495 * 120.00258 * 180.02562 * 11 9 8 13 13 C 1.52992 * 109.47269 * 184.79147 * 12 11 9 14 14 C 1.50694 * 115.55114 * 294.81128 * 13 12 11 15 15 H 1.08008 * 119.99906 * 95.20873 * 14 13 12 16 16 C 1.37875 * 120.00314 * 274.92789 * 14 13 12 17 17 N 1.31509 * 119.99913 * 355.42420 * 16 14 13 18 18 Si 1.86807 * 120.00040 * 175.41703 * 16 14 13 19 19 H 1.48494 * 109.47052 * 60.00642 * 18 16 14 20 20 H 1.48500 * 109.47055 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47106 * 300.00083 * 18 16 14 22 22 C 1.53003 * 117.49834 * 80.48431 * 13 12 11 23 23 C 1.53006 * 117.49908 * 149.14426 * 13 12 11 24 24 C 1.38756 * 119.23712 * 359.52098 * 6 5 4 25 25 O 1.35684 * 119.64827 * 180.25496 * 24 6 5 26 26 C 1.42899 * 116.99994 * 180.02562 * 25 24 6 27 27 N 1.32314 * 119.65452 * 0.02562 * 3 2 1 28 28 H 1.08995 * 109.46665 * 299.99586 * 1 2 3 29 29 H 1.08993 * 109.47357 * 59.99957 * 1 2 3 30 30 H 1.09008 * 109.46989 * 179.97438 * 1 2 3 31 31 H 1.07997 * 120.38441 * 359.97438 * 4 3 2 32 32 H 1.07997 * 120.72592 * 180.23438 * 5 4 3 33 33 H 1.09007 * 109.47472 * 139.71560 * 7 6 5 34 34 H 1.09003 * 109.47615 * 19.71966 * 7 6 5 35 35 H 0.97004 * 119.99607 * 359.97438 * 8 7 6 36 36 H 0.96999 * 119.99637 * 359.97438 * 11 9 8 37 37 H 1.09001 * 109.47395 * 64.78624 * 12 11 9 38 38 H 1.09007 * 109.47080 * 304.78945 * 12 11 9 39 39 H 0.97001 * 119.99960 * 184.99387 * 17 16 14 40 40 H 1.09003 * 117.50034 * 214.99852 * 22 13 12 41 41 H 1.09002 * 117.49971 * 0.02686 * 22 13 12 42 42 H 1.08996 * 117.49810 * 359.97342 * 23 13 12 43 43 H 1.08995 * 117.50078 * 144.97442 * 23 13 12 44 44 H 1.08997 * 109.47108 * 300.00001 * 26 25 24 45 45 H 1.08998 * 109.46533 * 59.99918 * 26 25 24 46 46 H 1.09000 * 109.46868 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 3.4315 1.2730 -0.0005 5 6 4.0515 2.5119 -0.0050 6 6 3.2593 3.6489 0.0005 7 6 3.8903 5.0174 0.0005 8 7 3.8766 5.5615 1.3606 9 6 4.3921 6.7829 1.6031 10 8 4.8688 7.4332 0.6931 11 7 4.3799 7.2833 2.8545 12 6 4.9397 8.6112 3.1180 13 6 4.9103 8.8877 4.6224 14 6 3.5386 8.9895 5.2379 15 1 3.0898 8.1241 5.7030 16 6 2.8587 10.1887 5.2125 17 7 3.4420 11.2652 4.7324 18 14 1.1090 10.2844 5.8598 19 1 1.0887 9.8909 7.2915 20 1 0.6052 11.6744 5.7209 21 1 0.2421 9.3640 5.0811 22 6 6.0236 8.2757 5.4750 23 6 6.0109 9.7812 5.1981 24 6 1.8784 3.5128 0.0002 25 8 1.0948 4.6204 0.0003 26 6 -0.3193 4.4147 0.0005 27 7 1.3175 2.3141 0.0005 28 1 -0.3632 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 4.0202 0.3676 -0.0005 32 1 5.1286 2.5898 -0.0093 33 1 3.3277 5.6770 -0.6604 34 1 4.9195 4.9430 -0.3507 35 1 3.4959 5.0429 2.0866 36 1 3.9999 6.7644 3.5806 37 1 4.3477 9.3647 2.5984 38 1 5.9692 8.6488 2.7617 39 1 2.9919 12.1231 4.7806 40 1 5.7639 7.9467 6.4812 41 1 6.7772 7.6764 4.9641 42 1 6.7562 10.1716 4.5051 43 1 5.7427 10.4428 6.0217 44 1 -0.6050 3.8540 -0.8895 45 1 -0.6047 3.8539 0.8905 46 1 -0.8268 5.3794 0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358136017.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:10 Heat of formation + Delta-G solvation = -64.195271 kcal Electronic energy + Delta-G solvation = -28596.340560 eV Core-core repulsion = 24487.103110 eV Total energy + Delta-G solvation = -4109.237450 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.09440 -40.83689 -39.95607 -38.57863 -38.22035 -35.97871 -34.89759 -33.93681 -33.32982 -31.81178 -28.86601 -28.60418 -27.78737 -27.08230 -25.95864 -24.02240 -23.15504 -22.88658 -21.74694 -21.20531 -19.93940 -19.30744 -18.99378 -18.15548 -17.49361 -17.20688 -17.08106 -16.68048 -16.52813 -16.33651 -16.05796 -15.99138 -15.68222 -15.07652 -14.91550 -14.82691 -14.44719 -14.37268 -14.12839 -14.05362 -13.50206 -13.35262 -13.08577 -12.91455 -12.89193 -12.79125 -12.57797 -12.49285 -12.37807 -11.98951 -11.71561 -11.44379 -11.25773 -10.99255 -10.91500 -10.83516 -10.41841 -10.23632 -10.00111 -9.54374 -9.21920 -8.07036 -6.21067 0.01002 0.21384 1.43319 1.45312 1.51339 1.90650 1.95871 2.12390 2.30969 2.43593 2.66186 3.15445 3.20901 3.42352 3.67295 3.69416 3.82428 4.15481 4.26238 4.29047 4.34602 4.35421 4.40014 4.42375 4.59531 4.61598 4.67967 4.69870 4.73323 4.77337 4.78723 4.87403 5.03029 5.06983 5.19880 5.32442 5.33530 5.55057 5.59988 5.66841 5.76592 5.80756 5.81377 6.16955 6.30147 6.39656 6.62364 6.86139 7.26539 7.48272 7.72922 8.99832 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013662 B = 0.002701 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.052257 B =10365.601223 C =11381.556682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.311 6.311 3 C 0.349 3.651 4 C -0.224 4.224 5 C 0.022 3.978 6 C -0.219 4.219 7 C 0.207 3.793 8 N -0.728 5.728 9 C 0.699 3.301 10 O -0.644 6.644 11 N -0.717 5.717 12 C 0.200 3.800 13 C 0.004 3.996 14 C -0.505 4.505 15 H 0.062 0.938 16 C 0.024 3.976 17 N -0.907 5.907 18 Si 0.949 3.051 19 H -0.269 1.269 20 H -0.291 1.291 21 H -0.274 1.274 22 C -0.176 4.176 23 C -0.153 4.153 24 C 0.362 3.638 25 O -0.314 6.314 26 C 0.038 3.962 27 N -0.604 5.604 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.124 0.876 31 H 0.170 0.830 32 H 0.181 0.819 33 H 0.054 0.946 34 H 0.082 0.918 35 H 0.404 0.596 36 H 0.405 0.595 37 H 0.021 0.979 38 H 0.037 0.963 39 H 0.259 0.741 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.069 0.931 43 H 0.064 0.936 44 H 0.063 0.937 45 H 0.059 0.941 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.490 -24.181 -9.256 26.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.218 6.218 3 C 0.171 3.829 4 C -0.244 4.244 5 C -0.003 4.003 6 C -0.223 4.223 7 C 0.083 3.917 8 N -0.384 5.384 9 C 0.398 3.602 10 O -0.527 6.527 11 N -0.370 5.370 12 C 0.075 3.925 13 C 0.003 3.997 14 C -0.543 4.543 15 H 0.081 0.919 16 C -0.177 4.177 17 N -0.545 5.545 18 Si 0.775 3.225 19 H -0.194 1.194 20 H -0.217 1.217 21 H -0.199 1.199 22 C -0.213 4.213 23 C -0.192 4.192 24 C 0.184 3.816 25 O -0.221 6.221 26 C -0.057 4.057 27 N -0.343 5.343 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.142 0.858 31 H 0.188 0.812 32 H 0.198 0.802 33 H 0.072 0.928 34 H 0.100 0.900 35 H 0.239 0.761 36 H 0.240 0.760 37 H 0.039 0.961 38 H 0.055 0.945 39 H 0.068 0.932 40 H 0.103 0.897 41 H 0.107 0.893 42 H 0.088 0.912 43 H 0.083 0.917 44 H 0.082 0.918 45 H 0.078 0.922 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -4.881 -23.448 -10.178 26.024 hybrid contribution -1.165 0.417 0.915 1.539 sum -6.045 -23.031 -9.263 25.550 Atomic orbital electron populations 1.23061 0.75875 1.04783 1.02129 1.86269 1.24321 1.23909 1.87280 1.19830 0.90001 0.83416 0.89659 1.21229 0.91088 1.00589 1.11531 1.21533 1.01774 0.88725 0.88264 1.19703 0.90254 0.96851 1.15507 1.19570 1.00403 0.89237 0.82523 1.44992 1.65280 1.16788 1.11313 1.16138 0.79159 0.81774 0.83088 1.90837 1.54961 1.61752 1.45163 1.44926 1.64595 1.19694 1.07779 1.20397 0.94661 0.81617 0.95834 1.19052 0.90470 1.00972 0.89227 1.20638 1.00059 0.96282 1.37272 0.91946 1.25696 1.01028 0.95789 0.95141 1.70105 1.39317 0.99137 1.45915 0.85761 0.80980 0.76738 0.79001 1.19383 1.21702 1.19902 1.22990 1.02182 0.95174 1.00982 1.22392 1.01641 0.92428 1.02692 1.19426 0.88672 0.83880 0.89619 1.86369 1.20851 1.27853 1.86982 1.23021 0.76260 1.03942 1.02436 1.66800 1.41901 0.98474 1.27166 0.92700 0.92545 0.85800 0.81243 0.80174 0.92757 0.89961 0.76120 0.75972 0.96054 0.94490 0.93232 0.89748 0.89342 0.91206 0.91684 0.91823 0.92176 0.87264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.44 10.38 113.37 1.18 1.61 16 2 O -0.31 -5.34 10.47 -89.86 -0.94 -6.28 16 3 C 0.35 6.67 7.48 84.76 0.63 7.30 16 4 C -0.22 -3.34 10.04 22.48 0.23 -3.11 16 5 C 0.02 0.32 9.80 22.42 0.22 0.54 16 6 C -0.22 -4.55 5.28 -19.66 -0.10 -4.65 16 7 C 0.21 5.25 5.48 85.63 0.47 5.72 16 8 N -0.73 -21.02 5.55 -482.29 -2.68 -23.70 16 9 C 0.70 27.11 8.57 179.05 1.53 28.64 16 10 O -0.64 -30.33 16.34 -3.97 -0.06 -30.39 16 11 N -0.72 -28.35 5.48 -478.55 -2.62 -30.98 16 12 C 0.20 9.37 5.50 86.38 0.48 9.84 16 13 C 0.00 0.17 1.47 -52.93 -0.08 0.09 16 14 C -0.50 -26.00 8.59 25.60 0.22 -25.78 16 15 H 0.06 3.09 7.82 -2.91 -0.02 3.07 16 16 C 0.02 1.29 5.43 84.65 0.46 1.75 16 17 N -0.91 -51.76 12.65 21.45 0.27 -51.49 16 18 Si 0.95 42.59 29.54 68.60 2.03 44.62 16 19 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 20 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 21 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 22 C -0.18 -7.08 9.96 30.62 0.30 -6.77 16 23 C -0.15 -7.09 9.14 30.62 0.28 -6.81 16 24 C 0.36 8.43 7.46 84.74 0.63 9.06 16 25 O -0.31 -7.90 9.72 -90.02 -0.87 -8.77 16 26 C 0.04 0.71 10.38 113.37 1.18 1.89 16 27 N -0.60 -13.00 8.06 -421.98 -3.40 -16.40 16 28 H 0.05 0.72 8.10 -2.39 -0.02 0.70 16 29 H 0.06 0.71 8.10 -2.39 -0.02 0.69 16 30 H 0.12 0.78 8.14 -2.38 -0.02 0.76 16 31 H 0.17 1.66 8.06 -2.91 -0.02 1.64 16 32 H 0.18 1.60 8.06 -2.91 -0.02 1.58 16 33 H 0.05 1.62 7.86 -2.38 -0.02 1.60 16 34 H 0.08 1.94 8.03 -2.39 -0.02 1.92 16 35 H 0.40 9.96 8.48 -92.71 -0.79 9.18 16 36 H 0.41 14.39 8.34 -92.71 -0.77 13.61 16 37 H 0.02 1.16 8.14 -2.39 -0.02 1.15 16 38 H 0.04 1.71 8.09 -2.38 -0.02 1.69 16 39 H 0.26 14.27 8.32 -92.71 -0.77 13.50 16 40 H 0.08 3.28 8.14 -2.39 -0.02 3.26 16 41 H 0.09 3.15 8.14 -2.39 -0.02 3.13 16 42 H 0.07 3.09 8.14 -2.39 -0.02 3.07 16 43 H 0.06 3.26 8.14 -2.39 -0.02 3.24 16 44 H 0.06 1.07 8.10 -2.39 -0.02 1.05 16 45 H 0.06 1.08 8.10 -2.39 -0.02 1.06 16 46 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -69.88 396.57 -1.21 -71.09 By element: Atomic # 1 Polarization: 33.52 SS G_CDS: -0.55 Total: 32.97 kcal Atomic # 6 Polarization: 11.71 SS G_CDS: 7.63 Total: 19.34 kcal Atomic # 7 Polarization: -114.13 SS G_CDS: -8.43 Total: -122.57 kcal Atomic # 8 Polarization: -43.56 SS G_CDS: -1.88 Total: -45.45 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.62 kcal Total: -69.88 -1.21 -71.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358136017.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.898 kcal (2) G-P(sol) polarization free energy of solvation -69.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds