Wall clock time and date at job start Tue Mar 31 2020 18:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46499 * 120.00177 * 2 1 4 4 C 1.52995 * 109.47425 * 89.99752 * 3 2 1 5 5 O 1.42903 * 109.46972 * 65.00259 * 4 3 2 6 6 C 1.42893 * 113.99793 * 180.02562 * 5 4 3 7 7 C 1.50707 * 109.47070 * 179.97438 * 6 5 4 8 8 C 1.38238 * 119.99792 * 89.99993 * 7 6 5 9 9 C 1.38235 * 119.99712 * 179.97438 * 8 7 6 10 10 C 1.38234 * 120.00220 * 359.97124 * 9 8 7 11 11 C 1.38233 * 120.00037 * 0.28719 * 10 9 8 12 12 C 1.38234 * 120.00179 * 269.97930 * 7 6 5 13 13 C 1.34781 * 120.00339 * 180.02562 * 2 1 3 14 14 O 1.21578 * 120.00317 * 180.02562 * 13 2 1 15 15 N 1.34779 * 119.99771 * 359.97438 * 13 2 1 16 16 C 1.46501 * 119.99920 * 180.02562 * 15 13 2 17 17 C 1.50703 * 109.46746 * 180.02562 * 16 15 13 18 18 O 1.21289 * 120.00110 * 359.97438 * 17 16 15 19 19 N 1.34782 * 119.99858 * 179.97438 * 17 16 15 20 20 C 1.37087 * 120.00304 * 179.97438 * 19 17 16 21 21 H 1.08011 * 119.99958 * 0.02562 * 20 19 17 22 22 C 1.38945 * 120.00596 * 180.02562 * 20 19 17 23 23 N 1.31409 * 120.00702 * 180.02562 * 22 20 19 24 24 Si 1.86803 * 119.99567 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.47141 * 89.99937 * 24 22 20 26 26 H 1.48501 * 109.47047 * 210.00123 * 24 22 20 27 27 H 1.48498 * 109.47094 * 329.99843 * 24 22 20 28 28 H 1.08999 * 109.47132 * 90.00366 * 1 2 3 29 29 H 1.09006 * 109.46846 * 209.99856 * 1 2 3 30 30 H 1.08990 * 109.47393 * 330.00019 * 1 2 3 31 31 H 1.09006 * 109.46616 * 329.99707 * 3 2 1 32 32 H 1.08996 * 109.47372 * 210.00277 * 3 2 1 33 33 H 1.09005 * 109.47112 * 305.00329 * 4 3 2 34 34 H 1.08993 * 109.47202 * 185.00432 * 4 3 2 35 35 H 1.09005 * 109.47744 * 60.00256 * 6 5 4 36 36 H 1.09000 * 109.47353 * 299.99456 * 6 5 4 37 37 H 1.08005 * 120.00068 * 359.97438 * 8 7 6 38 38 H 1.07999 * 119.99770 * 179.97438 * 9 8 7 39 39 H 1.08002 * 119.99744 * 180.02562 * 10 9 8 40 40 H 1.07998 * 120.00395 * 179.72811 * 11 10 9 41 41 H 1.07999 * 119.99968 * 359.97438 * 12 7 6 42 42 H 0.96998 * 120.00013 * 0.02562 * 15 13 2 43 43 H 1.09000 * 109.47339 * 300.00238 * 16 15 13 44 44 H 1.08994 * 109.46813 * 60.00546 * 16 15 13 45 45 H 0.97005 * 119.99804 * 0.02562 * 19 17 16 46 46 H 0.96999 * 120.00497 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 1.4424 5 8 3.3209 0.7725 2.0814 6 6 3.6240 1.0935 3.4404 7 6 4.5411 0.0431 4.0121 8 6 5.9116 0.1942 3.9131 9 6 6.7528 -0.7690 4.4380 10 6 6.2235 -1.8830 5.0624 11 6 4.8530 -2.0367 5.1567 12 6 4.0118 -1.0712 4.6359 13 6 2.1389 -1.1672 -0.0005 14 8 3.3547 -1.1672 -0.0001 15 7 1.4650 -2.3344 -0.0005 16 6 2.1976 -3.6031 -0.0005 17 6 1.2182 -4.7486 -0.0012 18 8 0.0258 -4.5269 -0.0011 19 7 1.6675 -6.0193 -0.0018 20 6 0.7767 -7.0613 -0.0018 21 1 -0.2852 -6.8640 -0.0018 22 6 1.2398 -8.3713 -0.0020 23 7 0.3859 -9.3702 -0.0025 24 14 3.0764 -8.7127 -0.0013 25 1 3.5625 -8.8034 1.3989 26 1 3.3418 -9.9950 -0.7016 27 1 3.7848 -7.6109 -0.7009 28 1 -0.3633 -0.0001 -1.0276 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3633 0.8899 0.5138 31 1 1.6083 2.0283 -0.5139 32 1 3.1498 1.1384 -0.5138 33 1 1.5061 1.7550 1.9815 34 1 2.9180 2.6960 1.4437 35 1 2.7018 1.1249 4.0208 36 1 4.1137 2.0663 3.4835 37 1 6.3251 1.0647 3.4256 38 1 7.8235 -0.6512 4.3603 39 1 6.8808 -2.6353 5.4729 40 1 4.4394 -2.9091 5.6407 41 1 2.9411 -1.1888 4.7140 42 1 0.4951 -2.3344 -0.0005 43 1 2.8243 -3.6609 -0.8905 44 1 2.8241 -3.6608 0.8895 45 1 2.6212 -6.1966 -0.0015 46 1 0.7092 -10.2847 -0.0022 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358319099.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:30 Heat of formation + Delta-G solvation = -67.365369 kcal Electronic energy + Delta-G solvation = -28733.922098 eV Core-core repulsion = 24624.547182 eV Total energy + Delta-G solvation = -4109.374916 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.03253 -39.40863 -38.42980 -37.63388 -35.41355 -34.43936 -33.67919 -32.18937 -31.75404 -30.97120 -30.00091 -27.64987 -26.51806 -25.89371 -24.30786 -22.67495 -22.66233 -21.40625 -19.68144 -19.57251 -18.73994 -17.80663 -17.08159 -16.78064 -16.43184 -15.94947 -15.73575 -15.46279 -15.32950 -14.98579 -14.72807 -14.48170 -14.11874 -13.87628 -13.66706 -13.47910 -13.14259 -13.07038 -12.90373 -12.68217 -12.57411 -12.50006 -12.31450 -12.11496 -11.95186 -11.79131 -11.48358 -11.19728 -11.11525 -10.98480 -10.60600 -10.02964 -9.83451 -9.67408 -9.65779 -8.97708 -8.93204 -8.79477 -8.70992 -8.43031 -8.26133 -6.37435 -3.89649 1.19283 1.34459 2.77105 3.03236 3.07959 3.15359 3.40983 3.53887 3.65132 3.98691 4.06901 4.15420 4.65116 4.67765 4.68894 4.91423 4.95321 4.95841 5.00574 5.05654 5.11225 5.16882 5.18195 5.21501 5.25525 5.42669 5.44855 5.56100 5.63075 5.71565 5.79062 5.88471 5.90196 5.95610 5.96410 6.36297 6.43588 6.49596 6.50960 6.80542 6.90777 7.07442 7.14304 7.49142 8.04551 8.25535 8.48961 8.85361 8.92913 9.34142 9.68615 10.74858 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009268 B = 0.003333 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3020.583270 B = 8399.361621 C =10708.110324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.634 5.634 3 C 0.138 3.862 4 C 0.042 3.958 5 O -0.354 6.354 6 C 0.102 3.898 7 C -0.086 4.086 8 C -0.098 4.098 9 C -0.125 4.125 10 C -0.115 4.115 11 C -0.121 4.121 12 C -0.095 4.095 13 C 0.709 3.291 14 O -0.577 6.577 15 N -0.728 5.728 16 C 0.127 3.873 17 C 0.441 3.559 18 O -0.580 6.580 19 N -0.578 5.578 20 C -0.309 4.309 21 H 0.121 0.879 22 C 0.045 3.955 23 N -0.876 5.876 24 Si 0.878 3.122 25 H -0.269 1.269 26 H -0.275 1.275 27 H -0.266 1.266 28 H 0.055 0.945 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.047 0.953 34 H 0.054 0.946 35 H 0.052 0.948 36 H 0.053 0.947 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.121 0.879 40 H 0.124 0.876 41 H 0.121 0.879 42 H 0.405 0.595 43 H 0.081 0.919 44 H 0.081 0.919 45 H 0.374 0.626 46 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.186 23.539 6.932 25.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.373 5.373 3 C 0.014 3.986 4 C -0.037 4.037 5 O -0.273 6.273 6 C 0.026 3.974 7 C -0.086 4.086 8 C -0.116 4.116 9 C -0.143 4.143 10 C -0.134 4.134 11 C -0.139 4.139 12 C -0.113 4.113 13 C 0.410 3.590 14 O -0.453 6.453 15 N -0.388 5.388 16 C -0.001 4.001 17 C 0.227 3.773 18 O -0.465 6.465 19 N -0.215 5.215 20 C -0.437 4.437 21 H 0.139 0.861 22 C -0.159 4.159 23 N -0.515 5.515 24 Si 0.704 3.296 25 H -0.194 1.194 26 H -0.200 1.200 27 H -0.192 1.192 28 H 0.074 0.926 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.108 0.892 32 H 0.111 0.889 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.138 0.862 38 H 0.139 0.861 39 H 0.139 0.861 40 H 0.142 0.858 41 H 0.139 0.861 42 H 0.245 0.755 43 H 0.099 0.901 44 H 0.099 0.901 45 H 0.208 0.792 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 8.301 23.238 6.828 25.603 hybrid contribution 0.709 -0.324 0.155 0.794 sum 9.010 22.914 6.983 25.592 Atomic orbital electron populations 1.21731 0.79965 1.03038 1.01793 1.46843 1.06015 1.04843 1.79562 1.21298 0.98301 0.84440 0.94594 1.23013 0.93459 0.92317 0.94861 1.88260 1.66919 1.48603 1.23483 1.21268 0.96691 0.95452 0.84039 1.19551 0.93783 0.96357 0.98944 1.21001 0.92769 0.99315 0.98527 1.21115 0.99665 0.94615 0.98928 1.21190 0.95353 0.97665 0.99147 1.21175 0.93666 0.98954 1.00151 1.21058 0.99911 0.93206 0.97166 1.15689 0.85237 0.80129 0.77920 1.90914 1.11233 1.86022 1.57179 1.44892 1.10843 1.03591 1.79440 1.20755 0.93905 0.82409 1.03070 1.19701 0.89276 0.83708 0.84641 1.90519 1.16449 1.83862 1.55639 1.42118 1.08339 1.05473 1.65616 1.19435 0.92363 0.83406 1.48531 0.86121 1.25048 0.98414 0.95219 0.97192 1.69615 1.34186 0.99264 1.48466 0.86686 0.84752 0.79027 0.79157 1.19399 1.20011 1.19174 0.92606 0.91014 0.91258 0.89238 0.88921 0.93495 0.92775 0.92997 0.92922 0.86198 0.86076 0.86078 0.85847 0.86147 0.75548 0.90109 0.90055 0.79242 0.91441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.76 10.20 59.84 0.61 1.37 16 2 N -0.63 -8.07 2.86 -187.36 -0.54 -8.60 16 3 C 0.14 1.40 5.86 -4.04 -0.02 1.37 16 4 C 0.04 0.40 6.28 37.16 0.23 0.64 16 5 O -0.35 -4.77 9.11 -42.97 -0.39 -5.16 16 6 C 0.10 1.11 6.06 36.01 0.22 1.33 16 7 C -0.09 -1.07 5.51 -104.62 -0.58 -1.64 16 8 C -0.10 -1.13 9.70 -39.58 -0.38 -1.51 16 9 C -0.13 -1.35 10.05 -39.58 -0.40 -1.75 16 10 C -0.12 -1.27 10.05 -39.58 -0.40 -1.66 16 11 C -0.12 -1.43 10.05 -39.58 -0.40 -1.83 16 12 C -0.10 -1.20 9.70 -39.58 -0.38 -1.58 16 13 C 0.71 12.06 7.91 -86.91 -0.69 11.38 16 14 O -0.58 -11.62 15.13 -2.44 -0.04 -11.66 16 15 N -0.73 -12.74 5.39 -66.41 -0.36 -13.10 16 16 C 0.13 2.39 6.15 -5.19 -0.03 2.36 16 17 C 0.44 10.03 7.85 -10.98 -0.09 9.94 16 18 O -0.58 -14.93 15.24 5.55 0.08 -14.85 16 19 N -0.58 -13.80 5.09 -10.96 -0.06 -13.85 16 20 C -0.31 -8.64 10.16 -14.94 -0.15 -8.79 16 21 H 0.12 3.82 7.39 -52.48 -0.39 3.44 16 22 C 0.05 1.23 5.50 -17.47 -0.10 1.13 16 23 N -0.88 -25.26 13.96 55.50 0.77 -24.48 16 24 Si 0.88 19.37 27.74 -169.99 -4.71 14.65 16 25 H -0.27 -5.82 7.11 56.52 0.40 -5.41 16 26 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 27 H -0.27 -5.43 6.52 56.52 0.37 -5.06 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.77 6.36 -51.93 -0.33 0.44 16 30 H 0.07 0.48 8.07 -51.93 -0.42 0.06 16 31 H 0.09 0.58 8.07 -51.93 -0.42 0.17 16 32 H 0.09 1.13 7.42 -51.93 -0.39 0.74 16 33 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.05 0.50 8.08 -51.93 -0.42 0.08 16 36 H 0.05 0.46 8.09 -51.93 -0.42 0.04 16 37 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 38 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 39 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 40 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 41 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 42 H 0.41 6.93 5.17 -40.82 -0.21 6.71 16 43 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 44 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 45 H 0.37 7.97 5.76 -40.82 -0.24 7.74 16 46 H 0.28 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 390.01 15.07 5.88 5.88 Total: -1.00 -35.73 390.01 -8.53 -44.26 By element: Atomic # 1 Polarization: 22.79 SS G_CDS: -6.62 Total: 16.17 kcal Atomic # 6 Polarization: 13.29 SS G_CDS: -2.55 Total: 10.74 kcal Atomic # 7 Polarization: -59.86 SS G_CDS: -0.17 Total: -60.03 kcal Atomic # 8 Polarization: -31.32 SS G_CDS: -0.34 Total: -31.67 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -4.71 Total: 14.65 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -35.73 -8.53 -44.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358319099.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.104 kcal (2) G-P(sol) polarization free energy of solvation -35.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds