Wall clock time and date at job start Tue Mar 31 2020 18:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46499 * 120.00177 * 2 1 4 4 C 1.52995 * 109.47425 * 89.99752 * 3 2 1 5 5 O 1.42903 * 109.46972 * 65.00259 * 4 3 2 6 6 C 1.42893 * 113.99793 * 180.02562 * 5 4 3 7 7 C 1.50707 * 109.47070 * 179.97438 * 6 5 4 8 8 C 1.38238 * 119.99792 * 89.99993 * 7 6 5 9 9 C 1.38235 * 119.99712 * 179.97438 * 8 7 6 10 10 C 1.38234 * 120.00220 * 359.97124 * 9 8 7 11 11 C 1.38233 * 120.00037 * 0.28719 * 10 9 8 12 12 C 1.38234 * 120.00179 * 269.97930 * 7 6 5 13 13 C 1.34781 * 120.00339 * 180.02562 * 2 1 3 14 14 O 1.21578 * 120.00317 * 180.02562 * 13 2 1 15 15 N 1.34779 * 119.99771 * 359.97438 * 13 2 1 16 16 C 1.46501 * 119.99920 * 180.02562 * 15 13 2 17 17 C 1.50703 * 109.46746 * 180.02562 * 16 15 13 18 18 O 1.21289 * 120.00110 * 359.97438 * 17 16 15 19 19 N 1.34782 * 119.99858 * 179.97438 * 17 16 15 20 20 C 1.37087 * 120.00304 * 179.97438 * 19 17 16 21 21 H 1.08011 * 119.99958 * 0.02562 * 20 19 17 22 22 C 1.38945 * 120.00596 * 180.02562 * 20 19 17 23 23 N 1.31409 * 120.00702 * 180.02562 * 22 20 19 24 24 Si 1.86803 * 119.99567 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.47141 * 89.99937 * 24 22 20 26 26 H 1.48501 * 109.47047 * 210.00123 * 24 22 20 27 27 H 1.48498 * 109.47094 * 329.99843 * 24 22 20 28 28 H 1.08999 * 109.47132 * 90.00366 * 1 2 3 29 29 H 1.09006 * 109.46846 * 209.99856 * 1 2 3 30 30 H 1.08990 * 109.47393 * 330.00019 * 1 2 3 31 31 H 1.09006 * 109.46616 * 329.99707 * 3 2 1 32 32 H 1.08996 * 109.47372 * 210.00277 * 3 2 1 33 33 H 1.09005 * 109.47112 * 305.00329 * 4 3 2 34 34 H 1.08993 * 109.47202 * 185.00432 * 4 3 2 35 35 H 1.09005 * 109.47744 * 60.00256 * 6 5 4 36 36 H 1.09000 * 109.47353 * 299.99456 * 6 5 4 37 37 H 1.08005 * 120.00068 * 359.97438 * 8 7 6 38 38 H 1.07999 * 119.99770 * 179.97438 * 9 8 7 39 39 H 1.08002 * 119.99744 * 180.02562 * 10 9 8 40 40 H 1.07998 * 120.00395 * 179.72811 * 11 10 9 41 41 H 1.07999 * 119.99968 * 359.97438 * 12 7 6 42 42 H 0.96998 * 120.00013 * 0.02562 * 15 13 2 43 43 H 1.09000 * 109.47339 * 300.00238 * 16 15 13 44 44 H 1.08994 * 109.46813 * 60.00546 * 16 15 13 45 45 H 0.97005 * 119.99804 * 0.02562 * 19 17 16 46 46 H 0.96999 * 120.00497 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 1.4424 5 8 3.3209 0.7725 2.0814 6 6 3.6240 1.0935 3.4404 7 6 4.5411 0.0431 4.0121 8 6 5.9116 0.1942 3.9131 9 6 6.7528 -0.7690 4.4380 10 6 6.2235 -1.8830 5.0624 11 6 4.8530 -2.0367 5.1567 12 6 4.0118 -1.0712 4.6359 13 6 2.1389 -1.1672 -0.0005 14 8 3.3547 -1.1672 -0.0001 15 7 1.4650 -2.3344 -0.0005 16 6 2.1976 -3.6031 -0.0005 17 6 1.2182 -4.7486 -0.0012 18 8 0.0258 -4.5269 -0.0011 19 7 1.6675 -6.0193 -0.0018 20 6 0.7767 -7.0613 -0.0018 21 1 -0.2852 -6.8640 -0.0018 22 6 1.2398 -8.3713 -0.0020 23 7 0.3859 -9.3702 -0.0025 24 14 3.0764 -8.7127 -0.0013 25 1 3.5625 -8.8034 1.3989 26 1 3.3418 -9.9950 -0.7016 27 1 3.7848 -7.6109 -0.7009 28 1 -0.3633 -0.0001 -1.0276 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3633 0.8899 0.5138 31 1 1.6083 2.0283 -0.5139 32 1 3.1498 1.1384 -0.5138 33 1 1.5061 1.7550 1.9815 34 1 2.9180 2.6960 1.4437 35 1 2.7018 1.1249 4.0208 36 1 4.1137 2.0663 3.4835 37 1 6.3251 1.0647 3.4256 38 1 7.8235 -0.6512 4.3603 39 1 6.8808 -2.6353 5.4729 40 1 4.4394 -2.9091 5.6407 41 1 2.9411 -1.1888 4.7140 42 1 0.4951 -2.3344 -0.0005 43 1 2.8243 -3.6609 -0.8905 44 1 2.8241 -3.6608 0.8895 45 1 2.6212 -6.1966 -0.0015 46 1 0.7092 -10.2847 -0.0022 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358319099.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:29 Heat of formation + Delta-G solvation = -92.512080 kcal Electronic energy + Delta-G solvation = -28735.012541 eV Core-core repulsion = 24624.547182 eV Total energy + Delta-G solvation = -4110.465359 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.31041 -40.31598 -40.13309 -38.55652 -36.50112 -36.26077 -35.29529 -33.83769 -33.02221 -31.80969 -30.94438 -29.14380 -27.46979 -26.81581 -26.07391 -23.64443 -23.50686 -22.23746 -21.48135 -20.93986 -20.52140 -19.17209 -17.92817 -17.74376 -17.52893 -17.23783 -16.96945 -16.81471 -16.63974 -16.35024 -16.00659 -15.76111 -15.38050 -14.99172 -14.88190 -14.72982 -14.33887 -14.29549 -14.23188 -13.99226 -13.75089 -13.49483 -13.40649 -13.32101 -13.15862 -12.96617 -12.61071 -12.45280 -12.29507 -12.00718 -11.92883 -11.77993 -11.59040 -11.15901 -10.65676 -10.48836 -10.33686 -10.16920 -9.84002 -9.77539 -9.46246 -8.46042 -6.07688 0.34321 0.48065 1.30545 1.33238 1.42758 1.63429 1.77689 2.19729 2.25842 2.63298 2.74158 3.09779 3.10529 3.23530 3.87667 3.89916 3.98156 4.12137 4.21882 4.23176 4.25491 4.28550 4.34384 4.38926 4.41805 4.43053 4.54295 4.55410 4.63856 4.69957 4.75486 4.90141 4.98908 5.07201 5.12462 5.36039 5.49453 5.52712 5.58858 5.59608 5.65230 5.87510 5.94742 6.08516 6.39065 6.48482 6.77191 6.99299 7.27901 7.64628 7.76934 8.70370 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009268 B = 0.003333 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3020.583270 B = 8399.361621 C =10708.110324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.629 5.629 3 C 0.133 3.867 4 C 0.038 3.962 5 O -0.391 6.391 6 C 0.103 3.897 7 C -0.104 4.104 8 C -0.110 4.110 9 C -0.130 4.130 10 C -0.124 4.124 11 C -0.136 4.136 12 C -0.118 4.118 13 C 0.705 3.295 14 O -0.612 6.612 15 N -0.732 5.732 16 C 0.141 3.859 17 C 0.448 3.552 18 O -0.613 6.613 19 N -0.578 5.578 20 C -0.331 4.331 21 H 0.065 0.935 22 C -0.005 4.005 23 N -0.925 5.925 24 Si 0.956 3.044 25 H -0.256 1.256 26 H -0.271 1.271 27 H -0.236 1.236 28 H 0.067 0.933 29 H 0.055 0.945 30 H 0.103 0.897 31 H 0.133 0.867 32 H 0.069 0.931 33 H 0.059 0.941 34 H 0.082 0.918 35 H 0.058 0.942 36 H 0.073 0.927 37 H 0.135 0.865 38 H 0.145 0.855 39 H 0.142 0.858 40 H 0.132 0.868 41 H 0.117 0.883 42 H 0.407 0.593 43 H 0.096 0.904 44 H 0.091 0.909 45 H 0.391 0.609 46 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.415 25.534 6.913 28.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.366 5.366 3 C 0.010 3.990 4 C -0.039 4.039 5 O -0.311 6.311 6 C 0.026 3.974 7 C -0.104 4.104 8 C -0.128 4.128 9 C -0.148 4.148 10 C -0.142 4.142 11 C -0.154 4.154 12 C -0.136 4.136 13 C 0.406 3.594 14 O -0.491 6.491 15 N -0.392 5.392 16 C 0.012 3.988 17 C 0.235 3.765 18 O -0.499 6.499 19 N -0.218 5.218 20 C -0.460 4.460 21 H 0.083 0.917 22 C -0.205 4.205 23 N -0.564 5.564 24 Si 0.776 3.224 25 H -0.181 1.181 26 H -0.196 1.196 27 H -0.159 1.159 28 H 0.086 0.914 29 H 0.074 0.926 30 H 0.122 0.878 31 H 0.150 0.850 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.100 0.900 35 H 0.076 0.924 36 H 0.091 0.909 37 H 0.153 0.847 38 H 0.163 0.837 39 H 0.160 0.840 40 H 0.150 0.850 41 H 0.135 0.865 42 H 0.246 0.754 43 H 0.114 0.886 44 H 0.109 0.891 45 H 0.227 0.773 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 10.503 25.295 6.809 28.222 hybrid contribution -0.121 -0.846 0.163 0.871 sum 10.382 24.448 6.972 27.461 Atomic orbital electron populations 1.21924 0.78024 1.03987 1.02861 1.46971 1.07299 1.04292 1.78028 1.21608 0.97840 0.84099 0.95454 1.23185 0.93822 0.92850 0.94073 1.88213 1.67870 1.50404 1.24570 1.21343 0.96954 0.95838 0.83220 1.19866 0.94683 0.96774 0.99098 1.21298 0.92685 1.00164 0.98699 1.21479 1.00968 0.94208 0.98147 1.21510 0.95305 0.98340 0.99015 1.21420 0.94346 0.99246 1.00413 1.21221 1.00053 0.94081 0.98278 1.15873 0.84939 0.80862 0.77745 1.90883 1.12753 1.86645 1.58863 1.44888 1.10833 1.03542 1.79966 1.20588 0.92691 0.81264 1.04224 1.20443 0.89489 0.84294 0.82274 1.90505 1.18438 1.84545 1.56379 1.41923 1.08577 1.04951 1.66303 1.19037 0.90818 0.85371 1.50758 0.91703 1.26014 1.04687 0.94132 0.95705 1.69769 1.37318 1.00066 1.49285 0.85488 0.77046 0.79783 0.80112 1.18061 1.19574 1.15910 0.91448 0.92582 0.87806 0.84957 0.91245 0.92281 0.90033 0.92366 0.90853 0.84714 0.83689 0.83969 0.84962 0.86490 0.75412 0.88561 0.89063 0.77345 0.90880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.27 10.20 127.77 1.30 2.57 16 2 N -0.63 -14.87 2.86 -864.95 -2.47 -17.34 16 3 C 0.13 2.37 5.86 86.38 0.51 2.88 16 4 C 0.04 0.63 6.28 71.98 0.45 1.09 16 5 O -0.39 -10.03 9.11 -141.58 -1.29 -11.32 16 6 C 0.10 2.11 6.06 71.24 0.43 2.54 16 7 C -0.10 -2.53 5.51 -19.86 -0.11 -2.64 16 8 C -0.11 -2.42 9.70 22.27 0.22 -2.20 16 9 C -0.13 -2.61 10.05 22.27 0.22 -2.39 16 10 C -0.12 -2.57 10.05 22.27 0.22 -2.35 16 11 C -0.14 -3.18 10.05 22.27 0.22 -2.96 16 12 C -0.12 -3.00 9.70 22.27 0.22 -2.79 16 13 C 0.70 23.38 7.91 179.05 1.42 24.80 16 14 O -0.61 -24.33 15.13 3.43 0.05 -24.27 16 15 N -0.73 -25.26 5.39 -482.30 -2.60 -27.86 16 16 C 0.14 5.17 6.15 85.63 0.53 5.70 16 17 C 0.45 20.49 7.85 87.66 0.69 21.17 16 18 O -0.61 -32.44 15.24 -3.06 -0.05 -32.49 16 19 N -0.58 -27.57 5.09 -306.98 -1.56 -29.13 16 20 C -0.33 -19.11 10.16 84.04 0.85 -18.26 16 21 H 0.06 4.39 7.39 -2.91 -0.02 4.37 16 22 C -0.01 -0.29 5.50 84.93 0.47 0.18 16 23 N -0.92 -54.73 13.96 21.66 0.30 -54.43 16 24 Si 0.96 38.98 27.74 68.60 1.90 40.89 16 25 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 26 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 27 H -0.24 -8.38 6.52 99.48 0.65 -7.73 16 28 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.06 1.15 6.36 -2.38 -0.02 1.14 16 30 H 0.10 1.07 8.07 -2.39 -0.02 1.05 16 31 H 0.13 1.19 8.07 -2.38 -0.02 1.17 16 32 H 0.07 1.60 7.42 -2.39 -0.02 1.58 16 33 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 34 H 0.08 0.90 8.14 -2.39 -0.02 0.89 16 35 H 0.06 1.07 8.08 -2.38 -0.02 1.05 16 36 H 0.07 1.14 8.09 -2.39 -0.02 1.12 16 37 H 0.13 2.41 8.06 -2.91 -0.02 2.38 16 38 H 0.15 2.10 8.06 -2.91 -0.02 2.07 16 39 H 0.14 2.22 8.06 -2.91 -0.02 2.20 16 40 H 0.13 2.68 8.06 -2.91 -0.02 2.65 16 41 H 0.12 2.87 8.06 -2.91 -0.02 2.85 16 42 H 0.41 13.87 5.17 -92.71 -0.48 13.39 16 43 H 0.10 3.28 8.14 -2.39 -0.02 3.26 16 44 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 45 H 0.39 15.92 5.76 -92.70 -0.53 15.39 16 46 H 0.28 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -81.57 390.01 1.86 -79.71 By element: Atomic # 1 Polarization: 48.95 SS G_CDS: -0.07 Total: 48.88 kcal Atomic # 6 Polarization: 19.72 SS G_CDS: 7.64 Total: 27.36 kcal Atomic # 7 Polarization: -122.42 SS G_CDS: -6.33 Total: -128.75 kcal Atomic # 8 Polarization: -66.80 SS G_CDS: -1.28 Total: -68.08 kcal Atomic # 14 Polarization: 38.98 SS G_CDS: 1.90 Total: 40.89 kcal Total: -81.57 1.86 -79.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358319099.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.798 kcal (2) G-P(sol) polarization free energy of solvation -81.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds