Wall clock time and date at job start Tue Mar 31 2020 18:45:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46499 * 1
3 3 C 1.46506 * 119.99537 * 2 1
4 4 C 1.34777 * 120.00199 * 180.02562 * 2 1 3
5 5 O 1.21283 * 119.99750 * 359.97438 * 4 2 1
6 6 C 1.50702 * 119.99928 * 180.27479 * 4 2 1
7 7 O 1.42899 * 109.46876 * 179.72354 * 6 4 2
8 8 C 1.35897 * 116.99793 * 179.97438 * 7 6 4
9 9 C 1.38763 * 120.05702 * 359.72171 * 8 7 6
10 10 C 1.38122 * 119.94152 * 179.69745 * 9 8 7
11 11 C 1.38283 * 120.05961 * 0.60477 * 10 9 8
12 12 C 1.38244 * 120.10851 * 359.66937 * 11 10 9
13 13 C 1.50704 * 119.97370 * 180.02562 * 12 11 10
14 14 N 1.46503 * 109.47555 * 269.98564 * 13 12 11
15 15 C 1.34767 * 120.00256 * 179.97438 * 14 13 12
16 16 O 1.21592 * 120.00296 * 359.97438 * 15 14 13
17 17 N 1.34770 * 120.00083 * 179.97438 * 15 14 13
18 18 C 1.46507 * 120.00256 * 179.97438 * 17 15 14
19 19 C 1.50695 * 109.47272 * 180.02562 * 18 17 15
20 20 H 1.07999 * 120.00224 * 0.02562 * 19 18 17
21 21 C 1.37877 * 120.00288 * 180.02562 * 19 18 17
22 22 N 1.31512 * 120.00591 * 180.02562 * 21 19 18
23 23 Si 1.86807 * 119.99576 * 359.97438 * 21 19 18
24 24 H 1.48498 * 109.47282 * 90.00503 * 23 21 19
25 25 H 1.48500 * 109.46952 * 210.00470 * 23 21 19
26 26 H 1.48500 * 109.47135 * 330.00284 * 23 21 19
27 27 C 1.38168 * 120.05720 * 0.02962 * 12 11 10
28 28 H 1.09004 * 109.47189 * 269.99454 * 1 2 3
29 29 H 1.09001 * 109.47567 * 29.99407 * 1 2 3
30 30 H 1.09005 * 109.47076 * 149.99913 * 1 2 3
31 31 H 1.09000 * 109.47020 * 240.00172 * 3 2 1
32 32 H 1.08998 * 109.46962 * 0.02562 * 3 2 1
33 33 H 1.09001 * 109.46379 * 120.00337 * 3 2 1
34 34 H 1.09004 * 109.46965 * 299.72211 * 6 4 2
35 35 H 1.08994 * 109.46990 * 59.72065 * 6 4 2
36 36 H 1.07995 * 120.02466 * 359.97438 * 9 8 7
37 37 H 1.08008 * 119.97008 * 180.29705 * 10 9 8
38 38 H 1.08001 * 119.94573 * 179.69726 * 11 10 9
39 39 H 1.09011 * 109.46599 * 29.98165 * 13 12 11
40 40 H 1.09001 * 109.47448 * 149.97833 * 13 12 11
41 41 H 0.97000 * 119.99400 * 359.97438 * 14 13 12
42 42 H 0.96999 * 120.00589 * 0.02562 * 17 15 14
43 43 H 1.08993 * 109.47456 * 300.00552 * 18 17 15
44 44 H 1.09006 * 109.46628 * 60.00558 * 18 17 15
45 45 H 0.97002 * 119.99919 * 179.97438 * 22 21 19
46 46 H 1.08002 * 120.02522 * 180.02562 * 27 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1974 1.2688 0.0000
4 6 2.1389 -1.1672 -0.0005
5 8 1.5325 -2.2175 -0.0005
6 6 3.6459 -1.1671 0.0057
7 8 4.1222 -2.5144 0.0104
8 6 5.4695 -2.6924 0.0158
9 6 6.3158 -1.5928 0.0108
10 6 7.6847 -1.7764 0.0226
11 6 8.2121 -3.0547 0.0268
12 6 7.3711 -4.1519 0.0261
13 6 7.9491 -5.5437 0.0312
14 7 8.1412 -5.9979 -1.3483
15 6 8.6508 -7.2219 -1.5899
16 8 8.9515 -7.9492 -0.6631
17 7 8.8270 -7.6399 -2.8590
18 6 9.3815 -8.9703 -3.1218
19 6 9.4763 -9.1902 -4.6096
20 1 9.1560 -8.4162 -5.2913
21 6 9.9718 -10.3794 -5.1006
22 7 10.0551 -10.5711 -6.3990
23 14 10.5265 -11.7179 -3.9214
24 1 9.3808 -12.6104 -3.6113
25 1 11.6153 -12.5097 -4.5481
26 1 11.0243 -11.0976 -2.6673
27 6 6.0010 -3.9736 0.0205
28 1 -0.3634 -0.0001 1.0277
29 1 -0.3634 0.8900 -0.5137
30 1 -0.3633 -0.8900 -0.5139
31 1 2.8240 1.3266 -0.8900
32 1 1.4890 2.0972 0.0005
33 1 2.8241 1.3265 0.8900
34 1 4.0129 -0.6550 -0.8838
35 1 4.0055 -0.6515 0.8961
36 1 5.9045 -0.5943 0.0021
37 1 8.3439 -0.9208 0.0236
38 1 9.2828 -3.1962 0.0311
39 1 8.9087 -5.5366 0.5484
40 1 7.2648 -6.2194 0.5444
41 1 7.9017 -5.4176 -2.0877
42 1 8.5875 -7.0597 -3.5985
43 1 10.3751 -9.0436 -2.6800
44 1 8.7319 -9.7277 -2.6829
45 1 10.4041 -11.4077 -6.7443
46 1 5.3444 -4.8311 0.0204
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000426456338.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:45:17
Heat of formation + Delta-G solvation = -65.694819 kcal
Electronic energy + Delta-G solvation = -27137.645535 eV
Core-core repulsion = 23028.343060 eV
Total energy + Delta-G solvation = -4109.302475 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 335.168 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-40.92550 -40.00610 -39.23015 -37.84258 -36.11725 -34.75888 -34.02628 -32.33709
-31.50967 -30.95051 -29.61804 -28.08138 -27.93434 -26.23178 -25.56606 -22.87228
-22.16435 -21.49847 -20.25981 -19.94559 -18.71141 -18.08110 -17.33386 -17.13169
-16.84848 -16.30211 -16.17823 -15.92271 -15.79420 -15.62077 -14.94664 -14.39256
-14.36746 -14.10997 -13.83593 -13.73162 -13.46245 -13.38167 -13.30374 -13.14320
-12.88041 -12.75441 -12.67665 -12.54267 -12.30043 -11.95095 -11.77919 -11.49295
-11.18951 -10.93067 -10.71288 -10.34368 -9.92178 -9.66376 -9.41460 -9.35759
-9.15726 -8.83060 -8.70288 -8.53154 -7.95471 -6.16156 -4.17763 0.90927
1.14332 1.95947 1.99454 2.98892 3.20076 3.32266 3.38754 3.47922
3.68599 3.81533 3.86261 4.28402 4.38325 4.38971 4.39616 4.44743
4.53193 4.63916 4.72379 4.75192 4.93934 4.99996 5.01437 5.04144
5.07589 5.19549 5.21685 5.27016 5.52735 5.72083 5.76230 5.81570
5.94514 6.10084 6.31646 6.41523 6.60272 6.77282 6.80348 7.00905
7.17553 7.30117 7.46497 7.54635 7.62839 8.33445 8.74569 8.86945
9.26143 9.45743 10.95831
Molecular weight = 335.17amu
Principal moments of inertia in cm(-1)
A = 0.017957 B = 0.001756 C = 0.001673
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1558.916199 B =15943.707138 C =16735.680264
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.086 3.914
2 N -0.622 5.622
3 C 0.073 3.927
4 C 0.514 3.486
5 O -0.510 6.510
6 C 0.045 3.955
7 O -0.290 6.290
8 C 0.124 3.876
9 C -0.206 4.206
10 C -0.082 4.082
11 C -0.134 4.134
12 C -0.061 4.061
13 C 0.181 3.819
14 N -0.751 5.751
15 C 0.695 3.305
16 O -0.604 6.604
17 N -0.722 5.722
18 C 0.238 3.762
19 C -0.542 4.542
20 H 0.079 0.921
21 C 0.077 3.923
22 N -0.894 5.894
23 Si 0.877 3.123
24 H -0.273 1.273
25 H -0.284 1.284
26 H -0.260 1.260
27 C -0.126 4.126
28 H 0.057 0.943
29 H 0.073 0.927
30 H 0.079 0.921
31 H 0.065 0.935
32 H 0.084 0.916
33 H 0.064 0.936
34 H 0.093 0.907
35 H 0.093 0.907
36 H 0.126 0.874
37 H 0.127 0.873
38 H 0.129 0.871
39 H 0.075 0.925
40 H 0.074 0.926
41 H 0.395 0.605
42 H 0.392 0.608
43 H 0.023 0.977
44 H 0.019 0.981
45 H 0.267 0.733
46 H 0.136 0.864
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.414 31.314 14.756 37.498
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.056 4.056
2 N -0.359 5.359
3 C -0.070 4.070
4 C 0.301 3.699
5 O -0.383 6.383
6 C -0.034 4.034
7 O -0.203 6.203
8 C 0.079 3.921
9 C -0.225 4.225
10 C -0.100 4.100
11 C -0.153 4.153
12 C -0.061 4.061
13 C 0.057 3.943
14 N -0.409 5.409
15 C 0.395 3.605
16 O -0.484 6.484
17 N -0.374 5.374
18 C 0.115 3.885
19 C -0.580 4.580
20 H 0.097 0.903
21 C -0.126 4.126
22 N -0.531 5.531
23 Si 0.704 3.296
24 H -0.199 1.199
25 H -0.210 1.210
26 H -0.184 1.184
27 C -0.145 4.145
28 H 0.076 0.924
29 H 0.092 0.908
30 H 0.098 0.902
31 H 0.083 0.917
32 H 0.102 0.898
33 H 0.083 0.917
34 H 0.111 0.889
35 H 0.111 0.889
36 H 0.144 0.856
37 H 0.145 0.855
38 H 0.147 0.853
39 H 0.093 0.907
40 H 0.092 0.908
41 H 0.228 0.772
42 H 0.226 0.774
43 H 0.041 0.959
44 H 0.037 0.963
45 H 0.077 0.923
46 H 0.154 0.846
Dipole moment (debyes) X Y Z Total
from point charges -14.548 29.717 15.455 36.518
hybrid contribution 0.124 0.317 -0.269 0.433
sum -14.423 30.033 15.187 36.615
Atomic orbital electron populations
1.21724 0.78155 1.03545 1.02218 1.47630 1.07472 1.05942 1.74844
1.21918 0.97699 0.85307 1.02076 1.20094 0.89021 0.83773 0.77049
1.90785 1.69701 1.30679 1.47172 1.22440 0.92530 0.84631 1.03757
1.86166 1.19259 1.25991 1.88842 1.18963 0.81596 0.94313 0.97250
1.21225 0.94581 0.97643 1.09067 1.20925 0.94171 0.97324 0.97565
1.21086 1.00188 0.91809 1.02239 1.19772 0.92312 0.95436 0.98601
1.19935 1.00818 0.89784 0.83767 1.45112 1.70937 1.17136 1.07687
1.16095 0.78762 0.81232 0.84392 1.90867 1.58423 1.55568 1.43499
1.45386 1.67436 1.20149 1.04469 1.19359 0.93567 0.78651 0.96875
1.21107 1.44399 1.03053 0.89419 0.90302 1.24782 0.94631 0.98065
0.95164 1.69883 1.45543 1.25891 1.11822 0.86809 0.79029 0.82045
0.81763 1.19861 1.20975 1.18414 1.20404 0.94685 0.95098 1.04327
0.92419 0.90827 0.90222 0.91663 0.89762 0.91713 0.88896 0.88949
0.85636 0.85484 0.85338 0.90662 0.90766 0.77197 0.77440 0.95896
0.96342 0.92317 0.84608
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.09 0.40 10.41 59.85 0.62 1.02 16
2 N -0.62 -3.47 3.27 -189.51 -0.62 -4.09 16
3 C 0.07 0.10 9.74 59.85 0.58 0.69 16
4 C 0.51 4.66 7.75 -10.98 -0.09 4.58 16
5 O -0.51 -7.16 16.08 -14.35 -0.23 -7.39 16
6 C 0.05 0.31 4.04 36.01 0.15 0.46 16
7 O -0.29 -3.23 9.67 -39.33 -0.38 -3.61 16
8 C 0.12 1.27 6.69 -39.21 -0.26 1.01 16
9 C -0.21 -1.60 9.04 -39.43 -0.36 -1.96 16
10 C -0.08 -0.63 10.04 -39.61 -0.40 -1.03 16
11 C -0.13 -1.23 9.70 -39.56 -0.38 -1.62 16
12 C -0.06 -0.65 5.25 -104.64 -0.55 -1.20 16
13 C 0.18 2.35 5.80 -5.19 -0.03 2.32 16
14 N -0.75 -11.23 5.55 -66.41 -0.37 -11.60 16
15 C 0.70 14.11 8.57 -86.93 -0.74 13.37 16
16 O -0.60 -14.61 16.34 5.28 0.09 -14.53 16
17 N -0.72 -15.35 5.55 -66.42 -0.37 -15.72 16
18 C 0.24 6.07 4.50 -5.19 -0.02 6.05 16
19 C -0.54 -15.22 9.83 -34.44 -0.34 -15.56 16
20 H 0.08 2.30 7.84 -52.49 -0.41 1.89 16
21 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16
22 N -0.89 -26.95 13.96 55.43 0.77 -26.18 16
23 Si 0.88 21.91 27.47 -169.99 -4.67 17.24 16
24 H -0.27 -6.74 7.11 56.52 0.40 -6.33 16
25 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16
26 H -0.26 -6.47 6.54 56.52 0.37 -6.10 16
27 C -0.13 -1.41 9.64 -39.43 -0.38 -1.79 16
28 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16
29 H 0.07 0.15 7.92 -51.93 -0.41 -0.26 16
30 H 0.08 0.53 7.42 -51.93 -0.39 0.14 16
31 H 0.06 0.03 7.86 -51.93 -0.41 -0.37 16
32 H 0.08 -0.01 7.79 -51.93 -0.40 -0.42 16
33 H 0.06 0.03 7.84 -51.93 -0.41 -0.38 16
34 H 0.09 0.41 7.38 -51.93 -0.38 0.03 16
35 H 0.09 0.39 7.39 -51.93 -0.38 0.01 16
36 H 0.13 0.59 6.30 -52.49 -0.33 0.26 16
37 H 0.13 0.66 8.06 -52.48 -0.42 0.24 16
38 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16
39 H 0.08 0.98 8.09 -51.92 -0.42 0.56 16
40 H 0.07 1.02 8.08 -51.93 -0.42 0.60 16
41 H 0.39 4.98 8.48 -40.82 -0.35 4.64 16
42 H 0.39 7.35 8.34 -40.82 -0.34 7.01 16
43 H 0.02 0.62 7.20 -51.93 -0.37 0.24 16
44 H 0.02 0.49 7.57 -51.93 -0.39 0.10 16
45 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16
46 H 0.14 1.58 8.06 -52.49 -0.42 1.16 16
LS Contribution 391.23 15.07 5.90 5.90
Total: -1.00 -38.51 391.23 -8.86 -47.36
By element:
Atomic # 1 Polarization: 10.82 SS G_CDS: -6.68 Total: 4.14 kcal
Atomic # 6 Polarization: 10.77 SS G_CDS: -2.30 Total: 8.47 kcal
Atomic # 7 Polarization: -57.00 SS G_CDS: -0.58 Total: -57.58 kcal
Atomic # 8 Polarization: -25.00 SS G_CDS: -0.52 Total: -25.53 kcal
Atomic # 14 Polarization: 21.91 SS G_CDS: -4.67 Total: 17.24 kcal
Total LS contribution 5.90 Total: 5.90 kcal
Total: -38.51 -8.86 -47.36 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000426456338.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -18.332 kcal
(2) G-P(sol) polarization free energy of solvation -38.506 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.838 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.857 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.363 kcal
(6) G-S(sol) free energy of system = (1) + (5) -65.695 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.72 seconds