Wall clock time and date at job start Tue Mar 31 2020 18:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46905 * 110.99863 * 2 1 4 4 C 1.46899 * 111.00088 * 123.94981 * 2 1 3 5 5 C 1.53000 * 109.46926 * 66.04971 * 4 2 1 6 6 O 1.42896 * 109.47193 * 64.99897 * 5 4 2 7 7 C 1.35957 * 117.00281 * 180.02562 * 6 5 4 8 8 C 1.38748 * 119.97923 * 0.23194 * 7 6 5 9 9 C 1.38050 * 120.02197 * 180.23130 * 8 7 6 10 10 C 1.38923 * 119.98022 * 359.51401 * 9 8 7 11 11 N 1.39870 * 120.02251 * 180.27280 * 10 9 8 12 12 C 1.34772 * 120.00005 * 324.90350 * 11 10 9 13 13 O 1.21386 * 119.99970 * 4.61271 * 12 11 10 14 14 C 1.49330 * 119.99961 * 184.61655 * 12 11 10 15 15 O 1.21361 * 120.00037 * 359.97438 * 14 12 11 16 16 N 1.34781 * 119.99969 * 180.02562 * 14 12 11 17 17 C 1.46500 * 119.99669 * 180.02562 * 16 14 12 18 18 C 1.50702 * 109.46746 * 179.97438 * 17 16 14 19 19 H 1.07996 * 120.00262 * 359.97438 * 18 17 16 20 20 C 1.37887 * 119.99888 * 179.97438 * 18 17 16 21 21 N 1.31517 * 119.99700 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 119.99817 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47170 * 89.99935 * 22 20 18 24 24 H 1.48497 * 109.47058 * 209.99682 * 22 20 18 25 25 H 1.48494 * 109.47300 * 329.99954 * 22 20 18 26 26 C 1.38916 * 119.95670 * 0.25628 * 10 9 8 27 27 C 1.38057 * 119.98210 * 359.97438 * 26 10 9 28 28 H 1.08999 * 109.47086 * 296.04411 * 1 2 3 29 29 H 1.09000 * 109.47044 * 56.04940 * 1 2 3 30 30 H 1.09004 * 109.46795 * 176.04405 * 1 2 3 31 31 H 1.08996 * 109.47463 * 183.95318 * 3 2 1 32 32 H 1.09005 * 109.46768 * 303.95417 * 3 2 1 33 33 H 1.08998 * 109.47216 * 63.95161 * 3 2 1 34 34 H 1.08998 * 109.47431 * 306.05121 * 4 2 1 35 35 H 1.08997 * 109.47275 * 186.04694 * 4 2 1 36 36 H 1.09002 * 109.46840 * 305.00129 * 5 4 2 37 37 H 1.08992 * 109.47344 * 184.99770 * 5 4 2 38 38 H 1.08004 * 119.98812 * 359.97438 * 8 7 6 39 39 H 1.07999 * 120.01465 * 179.79178 * 9 8 7 40 40 H 0.97002 * 119.99772 * 144.89931 * 11 10 9 41 41 H 0.97000 * 120.00044 * 359.97438 * 16 14 12 42 42 H 1.09000 * 109.47269 * 299.99223 * 17 16 14 43 43 H 1.08996 * 109.47589 * 59.99720 * 17 16 14 44 44 H 0.96994 * 119.99566 * 180.02562 * 21 20 18 45 45 H 1.08003 * 120.00821 * 180.02562 * 26 10 9 46 46 H 1.08000 * 119.99254 * 180.02562 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 1.6316 -2.2425 0.9704 6 8 2.2957 -2.7695 -0.1799 7 6 2.0775 -4.0791 -0.4728 8 6 1.2372 -4.8382 0.3290 9 6 1.0188 -6.1692 0.0352 10 6 1.6327 -6.7461 -1.0695 11 7 1.4075 -8.0932 -1.3713 12 6 1.2469 -8.9887 -0.3770 13 8 1.2140 -8.6147 0.7773 14 6 1.1096 -10.4412 -0.6955 15 8 1.1421 -10.8151 -1.8496 16 7 0.9485 -11.3368 0.2988 17 6 0.8144 -12.7618 -0.0136 18 6 0.6480 -13.5427 1.2645 19 1 0.6431 -13.0290 2.2144 20 6 0.5020 -14.9132 1.2210 21 7 0.5074 -15.5386 0.0641 22 14 0.2965 -15.8812 2.8053 23 1 -1.1471 -15.9869 3.1371 24 1 0.8653 -17.2418 2.6313 25 1 1.0078 -15.1844 3.9069 26 6 2.4700 -5.9841 -1.8744 27 6 2.6911 -4.6543 -1.5763 28 1 -0.3633 0.4512 0.9233 29 1 -0.3633 0.5739 -0.8525 30 1 -0.3633 -1.0253 -0.0709 31 1 3.0828 1.3434 -0.0708 32 1 1.5898 1.9164 -0.8525 33 1 1.7044 1.8724 0.9233 34 1 1.5611 -0.3872 2.0628 35 1 3.0797 -0.6610 1.1757 36 1 0.5533 -2.3388 0.8433 37 1 1.9440 -2.7963 1.8557 38 1 0.7571 -4.3886 1.1857 39 1 0.3674 -6.7608 0.6613 40 1 1.3668 -8.3827 -2.2962 41 1 0.9221 -11.0379 1.2212 42 1 -0.0582 -12.9139 -0.6489 43 1 1.7078 -13.1052 -0.5351 44 1 0.4043 -16.5026 0.0336 45 1 2.9474 -6.4316 -2.7337 46 1 3.3417 -4.0617 -2.2022 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427871566.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:23 Heat of formation + Delta-G solvation = -68.477408 kcal Electronic energy + Delta-G solvation = -27272.030049 eV Core-core repulsion = 23162.606912 eV Total energy + Delta-G solvation = -4109.423137 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.88014 -40.00130 -38.58035 -37.84671 -36.97592 -34.89156 -34.02392 -32.37743 -31.35926 -30.67036 -28.82948 -28.06783 -27.64119 -25.12304 -24.65077 -23.17012 -22.63165 -21.57833 -21.09013 -19.87961 -18.68567 -18.41049 -17.36362 -16.79776 -16.55644 -16.11521 -15.70685 -15.58230 -15.44111 -15.09963 -15.03283 -14.88215 -14.53444 -14.23383 -13.85061 -13.64980 -13.49382 -13.13242 -13.01804 -12.93145 -12.76663 -12.60098 -12.21603 -12.12539 -12.07088 -11.90966 -11.69615 -11.41309 -11.25815 -11.03284 -10.92936 -10.84033 -10.33779 -9.97201 -9.49365 -9.22026 -9.05168 -8.84004 -8.83363 -8.12552 -7.82968 -6.23022 -4.30380 1.08787 1.23154 1.88153 2.68012 2.96719 3.22924 3.29309 3.32549 3.42895 3.53458 3.75012 4.08179 4.31763 4.38506 4.53446 4.65659 4.73086 4.75182 4.87649 4.88648 4.92980 5.05863 5.07333 5.13270 5.13794 5.15230 5.25448 5.33996 5.40657 5.41983 5.48629 5.73893 5.88641 6.19633 6.24377 6.29302 6.47848 6.50606 6.68323 7.01357 7.08014 7.24124 7.27141 7.35324 7.54890 7.85033 7.89919 8.37211 8.55531 8.81766 9.35925 10.87058 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.028103 B = 0.001672 C = 0.001607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.103595 B =16744.154373 C =17421.240931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.541 5.541 3 C 0.025 3.975 4 C 0.055 3.945 5 C 0.062 3.938 6 O -0.299 6.299 7 C 0.116 3.884 8 C -0.193 4.193 9 C -0.079 4.079 10 C 0.106 3.894 11 N -0.648 5.648 12 C 0.508 3.492 13 O -0.509 6.509 14 C 0.491 3.509 15 O -0.536 6.536 16 N -0.670 5.670 17 C 0.246 3.754 18 C -0.547 4.547 19 H 0.066 0.934 20 C 0.066 3.934 21 N -0.885 5.885 22 Si 0.907 3.093 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.272 1.272 26 C -0.100 4.100 27 C -0.133 4.133 28 H 0.025 0.975 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.024 0.976 34 H 0.056 0.944 35 H 0.087 0.913 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.128 0.872 39 H 0.143 0.857 40 H 0.422 0.578 41 H 0.404 0.596 42 H 0.035 0.965 43 H 0.035 0.965 44 H 0.267 0.733 45 H 0.135 0.865 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.966 31.637 -0.269 31.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.265 5.265 3 C -0.123 4.123 4 C -0.073 4.073 5 C -0.014 4.014 6 O -0.212 6.212 7 C 0.070 3.930 8 C -0.212 4.212 9 C -0.099 4.099 10 C 0.012 3.988 11 N -0.295 5.295 12 C 0.291 3.709 13 O -0.383 6.383 14 C 0.270 3.730 15 O -0.415 6.415 16 N -0.320 5.320 17 C 0.126 3.874 18 C -0.585 4.585 19 H 0.085 0.915 20 C -0.139 4.139 21 N -0.522 5.522 22 Si 0.734 3.266 23 H -0.204 1.204 24 H -0.209 1.209 25 H -0.196 1.196 26 C -0.121 4.121 27 C -0.152 4.152 28 H 0.044 0.956 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.043 0.957 34 H 0.074 0.926 35 H 0.106 0.894 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.146 0.854 39 H 0.161 0.839 40 H 0.260 0.740 41 H 0.239 0.761 42 H 0.053 0.947 43 H 0.053 0.947 44 H 0.077 0.923 45 H 0.153 0.847 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 2.227 31.243 -0.852 31.334 hybrid contribution -0.592 -0.310 1.705 1.831 sum 1.635 30.933 0.853 30.988 Atomic orbital electron populations 1.22484 0.87300 1.02565 1.00600 1.61939 1.07984 1.13853 1.42690 1.22391 1.00998 0.88451 1.00498 1.22198 1.01741 0.91441 0.91959 1.22845 0.97158 0.93786 0.87624 1.86154 1.67241 1.21991 1.45826 1.19024 0.95775 0.83412 0.94787 1.21118 1.03178 0.94908 1.02024 1.21129 0.98206 0.93847 0.96696 1.17680 0.99266 0.83482 0.98324 1.43155 1.69896 1.05331 1.11156 1.20871 0.76639 0.88160 0.85196 1.90714 1.47003 1.80665 1.19921 1.19687 0.80750 0.85869 0.86723 1.90735 1.50934 1.80193 1.19639 1.46419 1.66840 1.09563 1.09128 1.19353 0.98175 0.72354 0.97517 1.21206 1.52710 0.92285 0.92329 0.91548 1.24939 0.94535 0.97454 0.96928 1.69965 1.48278 1.09591 1.24371 0.86358 0.78461 0.79128 0.82678 1.20381 1.20945 1.19638 1.20768 0.97140 0.93511 1.00648 1.20157 1.03190 0.94472 0.97399 0.95609 0.91110 0.91109 0.91148 0.91187 0.95730 0.92616 0.89411 0.91848 0.91490 0.85400 0.83938 0.73972 0.76091 0.94673 0.94688 0.92319 0.84728 0.84763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.33 60.07 0.56 0.67 16 2 N -0.54 -3.86 4.97 -251.25 -1.25 -5.11 16 3 C 0.02 0.13 9.57 60.07 0.57 0.71 16 4 C 0.05 0.34 5.34 -3.82 -0.02 0.32 16 5 C 0.06 0.46 4.79 37.16 0.18 0.63 16 6 O -0.30 -3.09 10.08 -19.60 -0.20 -3.29 16 7 C 0.12 1.28 6.69 -39.20 -0.26 1.02 16 8 C -0.19 -2.15 9.03 -39.46 -0.36 -2.51 16 9 C -0.08 -1.03 8.69 -39.40 -0.34 -1.37 16 10 C 0.11 1.38 6.30 -83.69 -0.53 0.85 16 11 N -0.65 -8.98 5.32 -10.27 -0.05 -9.03 16 12 C 0.51 8.59 7.73 -11.64 -0.09 8.50 16 13 O -0.51 -9.16 13.91 5.47 0.08 -9.08 16 14 C 0.49 9.79 7.89 -11.64 -0.09 9.70 16 15 O -0.54 -11.77 16.48 5.49 0.09 -11.68 16 16 N -0.67 -14.39 5.54 -61.95 -0.34 -14.74 16 17 C 0.25 6.35 5.43 -5.19 -0.03 6.32 16 18 C -0.55 -14.69 9.28 -34.44 -0.32 -15.01 16 19 H 0.07 1.69 7.60 -52.49 -0.40 1.29 16 20 C 0.07 1.79 5.46 -17.81 -0.10 1.69 16 21 N -0.88 -25.47 13.29 55.43 0.74 -24.73 16 22 Si 0.91 20.69 29.54 -169.99 -5.02 15.67 16 23 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 25 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 26 C -0.10 -1.08 9.96 -39.40 -0.39 -1.48 16 27 C -0.13 -1.40 9.98 -39.46 -0.39 -1.80 16 28 H 0.03 0.13 8.14 -51.93 -0.42 -0.29 16 29 H 0.07 0.39 8.12 -51.93 -0.42 -0.03 16 30 H 0.07 0.45 6.37 -51.93 -0.33 0.12 16 31 H 0.07 0.36 8.12 -51.93 -0.42 -0.06 16 32 H 0.07 0.34 8.12 -51.93 -0.42 -0.08 16 33 H 0.02 0.11 8.14 -51.93 -0.42 -0.31 16 34 H 0.06 0.27 8.12 -51.93 -0.42 -0.16 16 35 H 0.09 0.54 8.06 -51.93 -0.42 0.12 16 36 H 0.06 0.44 5.84 -51.93 -0.30 0.13 16 37 H 0.07 0.43 7.67 -51.93 -0.40 0.03 16 38 H 0.13 1.16 6.29 -52.48 -0.33 0.83 16 39 H 0.14 2.02 6.22 -52.49 -0.33 1.70 16 40 H 0.42 5.16 8.30 -40.82 -0.34 4.82 16 41 H 0.40 8.05 7.79 -40.82 -0.32 7.73 16 42 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 45 H 0.13 1.15 8.06 -52.48 -0.42 0.73 16 46 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 389.52 15.07 5.87 5.87 Total: -1.00 -31.87 389.52 -8.22 -40.09 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -6.52 Total: 7.78 kcal Atomic # 6 Polarization: 9.86 SS G_CDS: -1.61 Total: 8.25 kcal Atomic # 7 Polarization: -52.70 SS G_CDS: -0.91 Total: -53.61 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: -0.03 Total: -24.05 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.87 -8.22 -40.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427871566.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.390 kcal (2) G-P(sol) polarization free energy of solvation -31.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds