Wall clock time and date at job start Tue Mar 31 2020 18:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46905 * 110.99863 * 2 1 4 4 C 1.46899 * 111.00088 * 123.94981 * 2 1 3 5 5 C 1.53000 * 109.46926 * 66.04971 * 4 2 1 6 6 O 1.42896 * 109.47193 * 64.99897 * 5 4 2 7 7 C 1.35957 * 117.00281 * 180.02562 * 6 5 4 8 8 C 1.38748 * 119.97923 * 0.23194 * 7 6 5 9 9 C 1.38050 * 120.02197 * 180.23130 * 8 7 6 10 10 C 1.38923 * 119.98022 * 359.51401 * 9 8 7 11 11 N 1.39870 * 120.02251 * 180.27280 * 10 9 8 12 12 C 1.34772 * 120.00005 * 324.90350 * 11 10 9 13 13 O 1.21386 * 119.99970 * 4.61271 * 12 11 10 14 14 C 1.49330 * 119.99961 * 184.61655 * 12 11 10 15 15 O 1.21361 * 120.00037 * 359.97438 * 14 12 11 16 16 N 1.34781 * 119.99969 * 180.02562 * 14 12 11 17 17 C 1.46500 * 119.99669 * 180.02562 * 16 14 12 18 18 C 1.50702 * 109.46746 * 179.97438 * 17 16 14 19 19 H 1.07996 * 120.00262 * 359.97438 * 18 17 16 20 20 C 1.37887 * 119.99888 * 179.97438 * 18 17 16 21 21 N 1.31517 * 119.99700 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 119.99817 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47170 * 89.99935 * 22 20 18 24 24 H 1.48497 * 109.47058 * 209.99682 * 22 20 18 25 25 H 1.48494 * 109.47300 * 329.99954 * 22 20 18 26 26 C 1.38916 * 119.95670 * 0.25628 * 10 9 8 27 27 C 1.38057 * 119.98210 * 359.97438 * 26 10 9 28 28 H 1.08999 * 109.47086 * 296.04411 * 1 2 3 29 29 H 1.09000 * 109.47044 * 56.04940 * 1 2 3 30 30 H 1.09004 * 109.46795 * 176.04405 * 1 2 3 31 31 H 1.08996 * 109.47463 * 183.95318 * 3 2 1 32 32 H 1.09005 * 109.46768 * 303.95417 * 3 2 1 33 33 H 1.08998 * 109.47216 * 63.95161 * 3 2 1 34 34 H 1.08998 * 109.47431 * 306.05121 * 4 2 1 35 35 H 1.08997 * 109.47275 * 186.04694 * 4 2 1 36 36 H 1.09002 * 109.46840 * 305.00129 * 5 4 2 37 37 H 1.08992 * 109.47344 * 184.99770 * 5 4 2 38 38 H 1.08004 * 119.98812 * 359.97438 * 8 7 6 39 39 H 1.07999 * 120.01465 * 179.79178 * 9 8 7 40 40 H 0.97002 * 119.99772 * 144.89931 * 11 10 9 41 41 H 0.97000 * 120.00044 * 359.97438 * 16 14 12 42 42 H 1.09000 * 109.47269 * 299.99223 * 17 16 14 43 43 H 1.08996 * 109.47589 * 59.99720 * 17 16 14 44 44 H 0.96994 * 119.99566 * 180.02562 * 21 20 18 45 45 H 1.08003 * 120.00821 * 180.02562 * 26 10 9 46 46 H 1.08000 * 119.99254 * 180.02562 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 1.6316 -2.2425 0.9704 6 8 2.2957 -2.7695 -0.1799 7 6 2.0775 -4.0791 -0.4728 8 6 1.2372 -4.8382 0.3290 9 6 1.0188 -6.1692 0.0352 10 6 1.6327 -6.7461 -1.0695 11 7 1.4075 -8.0932 -1.3713 12 6 1.2469 -8.9887 -0.3770 13 8 1.2140 -8.6147 0.7773 14 6 1.1096 -10.4412 -0.6955 15 8 1.1421 -10.8151 -1.8496 16 7 0.9485 -11.3368 0.2988 17 6 0.8144 -12.7618 -0.0136 18 6 0.6480 -13.5427 1.2645 19 1 0.6431 -13.0290 2.2144 20 6 0.5020 -14.9132 1.2210 21 7 0.5074 -15.5386 0.0641 22 14 0.2965 -15.8812 2.8053 23 1 -1.1471 -15.9869 3.1371 24 1 0.8653 -17.2418 2.6313 25 1 1.0078 -15.1844 3.9069 26 6 2.4700 -5.9841 -1.8744 27 6 2.6911 -4.6543 -1.5763 28 1 -0.3633 0.4512 0.9233 29 1 -0.3633 0.5739 -0.8525 30 1 -0.3633 -1.0253 -0.0709 31 1 3.0828 1.3434 -0.0708 32 1 1.5898 1.9164 -0.8525 33 1 1.7044 1.8724 0.9233 34 1 1.5611 -0.3872 2.0628 35 1 3.0797 -0.6610 1.1757 36 1 0.5533 -2.3388 0.8433 37 1 1.9440 -2.7963 1.8557 38 1 0.7571 -4.3886 1.1857 39 1 0.3674 -6.7608 0.6613 40 1 1.3668 -8.3827 -2.2962 41 1 0.9221 -11.0379 1.2212 42 1 -0.0582 -12.9139 -0.6489 43 1 1.7078 -13.1052 -0.5351 44 1 0.4043 -16.5026 0.0336 45 1 2.9474 -6.4316 -2.7337 46 1 3.3417 -4.0617 -2.2022 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427871566.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:22 Heat of formation + Delta-G solvation = -92.290988 kcal Electronic energy + Delta-G solvation = -27273.062684 eV Core-core repulsion = 23162.606912 eV Total energy + Delta-G solvation = -4110.455772 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.10935 -41.00271 -39.87661 -38.76138 -37.79264 -36.51076 -35.43248 -34.34854 -32.18616 -31.34071 -30.02575 -29.35369 -28.49205 -26.34877 -25.57916 -24.46849 -23.74416 -22.76823 -21.75009 -21.38741 -20.12546 -19.23327 -18.55269 -18.28748 -17.36772 -17.31803 -17.23109 -16.93505 -16.56668 -16.07251 -15.93807 -15.77209 -15.64256 -15.33288 -15.26667 -14.91727 -14.43183 -14.31471 -14.07697 -13.98355 -13.71912 -13.64949 -13.29962 -13.22729 -13.00542 -12.75778 -12.73416 -12.70281 -12.64151 -12.31368 -12.20944 -12.07651 -11.61566 -11.53201 -11.00137 -10.84508 -10.67513 -10.05938 -10.01316 -9.28432 -8.77906 -8.31498 -6.47653 -0.02287 0.33730 0.59595 1.30065 1.45074 1.45702 1.57715 2.08792 2.26460 2.36405 2.71945 2.77001 2.99441 3.03972 3.43733 3.78888 3.89125 3.96577 4.07821 4.19250 4.25544 4.38067 4.40655 4.46399 4.48548 4.51333 4.64691 4.74311 4.81136 4.86893 4.97747 5.03275 5.04100 5.05477 5.17241 5.22830 5.27189 5.32267 5.35393 5.51296 5.72234 5.77669 5.99523 6.04563 6.07537 6.45849 6.51243 6.58253 6.75812 6.99411 7.25414 8.80140 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.028103 B = 0.001672 C = 0.001607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.103595 B =16744.154373 C =17421.240931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.562 5.562 3 C 0.025 3.975 4 C 0.056 3.944 5 C 0.055 3.945 6 O -0.308 6.308 7 C 0.118 3.882 8 C -0.194 4.194 9 C -0.092 4.092 10 C 0.080 3.920 11 N -0.630 5.630 12 C 0.518 3.482 13 O -0.521 6.521 14 C 0.494 3.506 15 O -0.557 6.557 16 N -0.672 5.672 17 C 0.262 3.738 18 C -0.563 4.563 19 H 0.080 0.920 20 C 0.011 3.989 21 N -0.925 5.925 22 Si 0.983 3.017 23 H -0.270 1.270 24 H -0.281 1.281 25 H -0.260 1.260 26 C -0.090 4.090 27 C -0.136 4.136 28 H 0.034 0.966 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.032 0.968 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.068 0.932 37 H 0.077 0.923 38 H 0.146 0.854 39 H 0.127 0.873 40 H 0.430 0.570 41 H 0.413 0.587 42 H 0.006 0.994 43 H 0.006 0.994 44 H 0.271 0.729 45 H 0.158 0.842 46 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.322 33.517 0.886 33.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.287 5.287 3 C -0.122 4.122 4 C -0.071 4.071 5 C -0.020 4.020 6 O -0.221 6.221 7 C 0.072 3.928 8 C -0.213 4.213 9 C -0.112 4.112 10 C -0.013 4.013 11 N -0.277 5.277 12 C 0.300 3.700 13 O -0.396 6.396 14 C 0.274 3.726 15 O -0.437 6.437 16 N -0.322 5.322 17 C 0.140 3.860 18 C -0.601 4.601 19 H 0.098 0.902 20 C -0.189 4.189 21 N -0.563 5.563 22 Si 0.806 3.194 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.184 1.184 26 C -0.110 4.110 27 C -0.155 4.155 28 H 0.053 0.947 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.051 0.949 34 H 0.091 0.909 35 H 0.105 0.895 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.163 0.837 39 H 0.145 0.855 40 H 0.269 0.731 41 H 0.249 0.751 42 H 0.024 0.976 43 H 0.023 0.977 44 H 0.080 0.920 45 H 0.176 0.824 46 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 2.588 33.193 0.290 33.295 hybrid contribution -0.681 -0.703 1.265 1.600 sum 1.907 32.489 1.555 32.582 Atomic orbital electron populations 1.22472 0.86911 1.02298 1.01175 1.61941 1.08569 1.14828 1.43355 1.22398 1.01002 0.87795 1.01041 1.22213 1.01820 0.90598 0.92510 1.23085 0.97357 0.94565 0.87029 1.86157 1.67564 1.21418 1.46992 1.19199 0.95176 0.83813 0.94657 1.21247 1.03241 0.94171 1.02669 1.21109 0.98600 0.94671 0.96856 1.17867 1.01116 0.82816 0.99518 1.42975 1.68439 1.05490 1.10778 1.20065 0.77537 0.86757 0.85604 1.90719 1.48201 1.80344 1.20368 1.20203 0.79221 0.87277 0.85920 1.90716 1.51412 1.81089 1.20522 1.46150 1.67778 1.08263 1.10048 1.18846 0.95465 0.74822 0.96819 1.21573 1.52644 0.92920 0.92934 0.90235 1.25957 0.93808 0.98592 1.00581 1.70099 1.49156 1.10094 1.26930 0.85182 0.78715 0.77324 0.78186 1.19570 1.20641 1.18414 1.20987 0.96014 0.93388 1.00581 1.20446 1.03121 0.94476 0.97444 0.94702 0.90938 0.91722 0.91094 0.90941 0.94918 0.90890 0.89478 0.91350 0.90449 0.83661 0.85479 0.73078 0.75064 0.97598 0.97654 0.92043 0.82405 0.82877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.33 127.69 1.19 1.39 16 2 N -0.56 -7.08 4.97 -948.83 -4.71 -11.80 16 3 C 0.03 0.23 9.57 127.69 1.22 1.45 16 4 C 0.06 0.59 5.34 86.30 0.46 1.06 16 5 C 0.05 0.70 4.79 71.98 0.35 1.05 16 6 O -0.31 -5.77 10.08 -93.06 -0.94 -6.71 16 7 C 0.12 2.38 6.69 22.51 0.15 2.53 16 8 C -0.19 -4.06 9.03 22.35 0.20 -3.85 16 9 C -0.09 -2.35 8.69 22.39 0.19 -2.16 16 10 C 0.08 1.98 6.30 38.18 0.24 2.22 16 11 N -0.63 -17.03 5.32 -304.76 -1.62 -18.65 16 12 C 0.52 17.48 7.73 87.23 0.67 18.15 16 13 O -0.52 -18.66 13.91 -3.36 -0.05 -18.70 16 14 C 0.49 20.03 7.89 87.23 0.69 20.71 16 15 O -0.56 -25.04 16.48 -3.28 -0.05 -25.09 16 16 N -0.67 -29.54 5.54 -468.26 -2.59 -32.13 16 17 C 0.26 14.04 5.43 85.63 0.46 14.50 16 18 C -0.56 -30.53 9.28 25.60 0.24 -30.30 16 19 H 0.08 4.01 7.60 -2.91 -0.02 3.99 16 20 C 0.01 0.61 5.46 84.66 0.46 1.07 16 21 N -0.92 -54.22 13.29 21.45 0.28 -53.93 16 22 Si 0.98 42.14 29.54 68.60 2.03 44.16 16 23 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 24 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 25 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 26 C -0.09 -1.75 9.96 22.39 0.22 -1.53 16 27 C -0.14 -2.55 9.98 22.35 0.22 -2.33 16 28 H 0.03 0.29 8.14 -2.39 -0.02 0.27 16 29 H 0.07 0.71 8.12 -2.39 -0.02 0.69 16 30 H 0.06 0.74 6.37 -2.39 -0.02 0.72 16 31 H 0.07 0.62 8.12 -2.39 -0.02 0.60 16 32 H 0.07 0.60 8.12 -2.38 -0.02 0.59 16 33 H 0.03 0.24 8.14 -2.39 -0.02 0.22 16 34 H 0.07 0.52 8.12 -2.39 -0.02 0.50 16 35 H 0.09 0.92 8.06 -2.39 -0.02 0.90 16 36 H 0.07 0.82 5.84 -2.39 -0.01 0.80 16 37 H 0.08 0.84 7.67 -2.39 -0.02 0.82 16 38 H 0.15 2.40 6.29 -2.91 -0.02 2.38 16 39 H 0.13 3.62 6.22 -2.91 -0.02 3.60 16 40 H 0.43 10.18 8.30 -92.71 -0.77 9.41 16 41 H 0.41 16.60 7.79 -92.71 -0.72 15.87 16 42 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 43 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 44 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 45 H 0.16 2.27 8.06 -2.91 -0.02 2.25 16 46 H 0.15 2.28 8.06 -2.91 -0.02 2.26 16 Total: -1.00 -68.72 389.52 -1.15 -69.87 By element: Atomic # 1 Polarization: 29.48 SS G_CDS: -0.47 Total: 29.02 kcal Atomic # 6 Polarization: 16.99 SS G_CDS: 6.98 Total: 23.97 kcal Atomic # 7 Polarization: -107.86 SS G_CDS: -8.65 Total: -116.51 kcal Atomic # 8 Polarization: -49.46 SS G_CDS: -1.04 Total: -50.50 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.16 kcal Total: -68.72 -1.15 -69.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427871566.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.424 kcal (2) G-P(sol) polarization free energy of solvation -68.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds