Wall clock time and date at job start Tue Mar 31 2020 18:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46896 * 111.00268 * 2 1 4 4 C 1.50700 * 109.46920 * 300.20612 * 3 2 1 5 5 C 1.32995 * 120.00016 * 130.53955 * 4 3 2 6 6 C 1.47099 * 120.00133 * 9.67054 * 5 4 3 7 7 O 1.21622 * 119.99760 * 18.51162 * 6 5 4 8 8 N 1.34774 * 120.00340 * 198.51347 * 6 5 4 9 9 C 1.46962 * 120.59557 * 185.57459 * 8 6 5 10 10 C 1.53366 * 108.63680 * 124.75141 * 9 8 6 11 11 N 1.46971 * 108.63546 * 49.42361 * 10 9 8 12 12 C 1.36929 * 120.59416 * 124.74877 * 11 10 9 13 13 H 1.08001 * 120.00586 * 219.85924 * 12 11 10 14 14 C 1.38816 * 119.99841 * 39.86717 * 12 11 10 15 15 N 1.31616 * 120.00046 * 17.16176 * 14 12 11 16 16 Si 1.86800 * 119.99985 * 197.16435 * 14 12 11 17 17 H 1.48498 * 109.47162 * 89.99569 * 16 14 12 18 18 H 1.48497 * 109.47499 * 209.99821 * 16 14 12 19 19 H 1.48505 * 109.46900 * 329.99915 * 16 14 12 20 20 C 1.46965 * 118.80907 * 304.77980 * 11 10 9 21 21 C 1.46968 * 120.59182 * 5.55401 * 8 6 5 22 22 C 1.46906 * 110.99848 * 123.95469 * 2 1 3 23 23 C 1.53007 * 109.46818 * 159.19493 * 22 2 1 24 24 F 1.39890 * 109.47202 * 67.75353 * 23 22 2 25 25 F 1.39905 * 109.46694 * 187.75404 * 23 22 2 26 26 F 1.39901 * 109.47049 * 307.74797 * 23 22 2 27 27 H 1.08994 * 109.47264 * 65.25662 * 1 2 3 28 28 H 1.09003 * 109.47364 * 185.25598 * 1 2 3 29 29 H 1.08993 * 109.47131 * 305.25396 * 1 2 3 30 30 H 1.09001 * 109.47308 * 180.20903 * 3 2 1 31 31 H 1.09001 * 109.47136 * 60.20492 * 3 2 1 32 32 H 1.08003 * 120.00004 * 310.53653 * 4 3 2 33 33 H 1.08000 * 119.99872 * 189.68016 * 5 4 3 34 34 H 1.09001 * 109.60897 * 5.00939 * 9 8 6 35 35 H 1.09005 * 109.61072 * 244.49731 * 9 8 6 36 36 H 1.09000 * 109.61526 * 169.17036 * 10 9 8 37 37 H 1.08998 * 109.61162 * 289.51257 * 10 9 8 38 38 H 0.97002 * 120.00123 * 180.02562 * 15 14 12 39 39 H 1.09000 * 109.60950 * 174.97354 * 20 11 10 40 40 H 1.09005 * 109.60857 * 295.47577 * 20 11 10 41 41 H 1.08992 * 109.60863 * 115.50537 * 21 8 6 42 42 H 1.08997 * 109.74805 * 355.07387 * 21 8 6 43 43 H 1.09001 * 109.46924 * 279.18887 * 22 2 1 44 44 H 1.08999 * 109.47302 * 39.19712 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.5082 2.0965 -1.2279 5 6 0.9571 3.3015 -1.1137 6 6 1.0135 4.0174 0.1700 7 8 1.8260 3.6900 1.0137 8 7 0.1648 5.0362 0.4114 9 6 0.2885 5.8386 1.6364 10 6 0.4209 7.3152 1.2438 11 7 -0.6446 7.6440 0.2863 12 6 -1.5069 8.6790 0.5316 13 1 -2.5552 8.5768 0.2925 14 6 -1.0338 9.8597 1.0874 15 7 0.2552 10.1253 1.0694 16 14 -2.2264 11.0715 1.8611 17 1 -2.3930 10.7511 3.3014 18 1 -1.6931 12.4501 1.7191 19 1 -3.5414 10.9766 1.1776 20 6 -0.7684 6.8415 -0.9386 21 6 -0.9008 5.3648 -0.5460 22 6 1.9954 -0.7660 1.1376 23 6 3.4371 -1.1871 0.8455 24 9 4.2578 -0.0545 0.8211 25 9 3.8789 -2.0617 1.8441 26 9 3.4927 -1.8302 -0.3957 27 1 -0.3633 0.4301 -0.9333 28 1 -0.3634 -1.0234 0.0941 29 1 -0.3633 0.5931 0.8391 30 1 3.0851 1.3423 -0.0037 31 1 1.6490 1.8936 0.8918 32 1 1.6065 1.6376 -2.2007 33 1 0.4681 3.7544 -1.9636 34 1 1.1740 5.5266 2.1902 35 1 -0.5993 5.7025 2.2541 36 1 0.3209 7.9402 2.1312 37 1 1.3944 7.4857 0.7842 38 1 0.5859 10.9502 1.4581 39 1 -1.6537 7.1536 -1.4925 40 1 0.1194 6.9776 -1.5564 41 1 -1.8731 5.1950 -0.0837 42 1 -0.8037 4.7401 -1.4338 43 1 1.9724 -0.1468 2.0344 44 1 1.3821 -1.6536 1.2930 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492865826.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:22 Heat of formation + Delta-G solvation = -121.834819 kcal Electronic energy + Delta-G solvation = -29696.982851 eV Core-core repulsion = 25043.389222 eV Total energy + Delta-G solvation = -4653.593629 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.156 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.24099 -47.80866 -47.66321 -39.93876 -38.08019 -36.81622 -33.90993 -33.51325 -31.23644 -30.55751 -29.81040 -27.81813 -26.80083 -24.64820 -23.76759 -23.13578 -22.28043 -21.49541 -19.87908 -18.72769 -18.66948 -18.25935 -17.76028 -17.29797 -16.29399 -15.70742 -15.57615 -15.40323 -14.86254 -14.71754 -14.62559 -14.50883 -14.23580 -14.13726 -13.87743 -13.84436 -13.82678 -13.59426 -13.47456 -13.32180 -13.00966 -12.85541 -12.67661 -12.23422 -11.98058 -11.82514 -11.75124 -11.47458 -11.32007 -10.87294 -10.79390 -10.58442 -10.32796 -10.13623 -9.88462 -9.49139 -9.43998 -8.70690 -8.59171 -8.21430 -6.62081 -5.90199 -3.47734 1.39029 2.51142 3.23612 3.30168 3.37219 3.38580 3.43394 3.47731 3.63527 3.81884 4.23456 4.39064 4.67506 4.71756 4.78387 4.90691 4.99344 5.17466 5.20255 5.25848 5.38832 5.57677 5.62139 5.65140 5.71554 5.77980 5.88483 6.00997 6.15523 6.21736 6.31637 6.35368 6.41412 6.44340 6.66211 6.69282 6.80919 7.15190 7.34073 7.72321 7.85574 8.39321 8.48354 9.07167 9.66970 10.31986 11.15199 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.029534 B = 0.002255 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.826441 B =12411.885152 C =12736.731711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.539 5.539 3 C 0.036 3.964 4 C -0.066 4.066 5 C -0.205 4.205 6 C 0.535 3.465 7 O -0.554 6.554 8 N -0.589 5.589 9 C 0.088 3.912 10 C 0.163 3.837 11 N -0.587 5.587 12 C -0.271 4.271 13 H 0.062 0.938 14 C 0.018 3.982 15 N -0.890 5.890 16 Si 0.902 3.098 17 H -0.285 1.285 18 H -0.290 1.290 19 H -0.277 1.277 20 C 0.129 3.871 21 C 0.088 3.912 22 C 0.009 3.991 23 C 0.457 3.543 24 F -0.180 7.180 25 F -0.187 7.187 26 F -0.174 7.174 27 H 0.079 0.921 28 H 0.070 0.930 29 H 0.034 0.966 30 H 0.101 0.899 31 H 0.095 0.905 32 H 0.129 0.871 33 H 0.135 0.865 34 H 0.080 0.920 35 H 0.060 0.940 36 H 0.079 0.921 37 H 0.026 0.974 38 H 0.256 0.744 39 H 0.067 0.933 40 H 0.023 0.977 41 H 0.066 0.934 42 H 0.075 0.925 43 H 0.086 0.914 44 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.988 -22.343 -2.775 22.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.263 5.263 3 C -0.090 4.090 4 C -0.087 4.087 5 C -0.226 4.226 6 C 0.326 3.674 7 O -0.436 6.436 8 N -0.320 5.320 9 C -0.036 4.036 10 C 0.037 3.963 11 N -0.310 5.310 12 C -0.401 4.401 13 H 0.079 0.921 14 C -0.184 4.184 15 N -0.531 5.531 16 Si 0.731 3.269 17 H -0.212 1.212 18 H -0.216 1.216 19 H -0.202 1.202 20 C 0.002 3.998 21 C -0.037 4.037 22 C -0.121 4.121 23 C 0.402 3.598 24 F -0.161 7.161 25 F -0.168 7.168 26 F -0.156 7.156 27 H 0.097 0.903 28 H 0.089 0.911 29 H 0.052 0.948 30 H 0.119 0.881 31 H 0.113 0.887 32 H 0.147 0.853 33 H 0.152 0.848 34 H 0.098 0.902 35 H 0.078 0.922 36 H 0.098 0.902 37 H 0.045 0.955 38 H 0.066 0.934 39 H 0.086 0.914 40 H 0.041 0.959 41 H 0.084 0.916 42 H 0.094 0.906 43 H 0.104 0.896 44 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 1.660 -22.525 -2.709 22.748 hybrid contribution -0.586 1.170 0.893 1.584 sum 1.074 -21.355 -1.816 21.459 Atomic orbital electron populations 1.22424 0.85388 1.02022 1.02187 1.61799 1.09305 1.15315 1.39881 1.22290 1.02095 0.85923 0.98652 1.23393 0.92083 0.94118 0.99060 1.22838 1.03992 0.97639 0.98177 1.18632 0.81070 0.80490 0.87194 1.90641 1.39131 1.65840 1.48006 1.47990 1.30790 1.30734 1.22468 1.22481 1.01480 0.94148 0.85501 1.21042 0.91343 0.89309 0.94633 1.43836 1.35706 1.34721 1.16718 1.19029 0.89179 0.91215 1.40656 0.92068 1.25375 0.95767 0.96538 1.00712 1.70048 1.12573 1.25031 1.45458 0.86332 0.80691 0.80344 0.79576 1.21154 1.21623 1.20167 1.21333 0.99506 0.88652 0.90272 1.22449 0.89924 0.99449 0.91844 1.23210 0.91059 1.02147 0.95666 1.20532 0.90100 0.74865 0.74315 1.93154 1.75779 1.51054 1.96142 1.93181 1.91254 1.70602 1.61793 1.93192 1.96997 1.82071 1.43294 0.90268 0.91098 0.94763 0.88081 0.88730 0.85348 0.84786 0.90155 0.92156 0.90246 0.95540 0.93371 0.91421 0.95857 0.91605 0.90643 0.89604 0.86475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.22 60.06 0.55 0.77 16 2 N -0.54 -5.17 4.51 -244.37 -1.10 -6.28 16 3 C 0.04 0.42 4.33 -4.98 -0.02 0.40 16 4 C -0.07 -0.74 8.45 -36.13 -0.31 -1.04 16 5 C -0.20 -2.56 9.10 -37.81 -0.34 -2.91 16 6 C 0.54 8.83 7.25 -12.67 -0.09 8.74 16 7 O -0.55 -10.42 12.99 5.26 0.07 -10.35 16 8 N -0.59 -10.22 2.95 -173.89 -0.51 -10.74 16 9 C 0.09 1.69 6.58 -3.60 -0.02 1.67 16 10 C 0.16 3.77 5.51 -3.60 -0.02 3.75 16 11 N -0.59 -14.03 2.88 -172.04 -0.50 -14.53 16 12 C -0.27 -7.11 9.42 -15.06 -0.14 -7.25 16 13 H 0.06 1.58 7.89 -52.49 -0.41 1.16 16 14 C 0.02 0.47 4.85 -17.43 -0.08 0.39 16 15 N -0.89 -25.32 12.10 55.49 0.67 -24.65 16 16 Si 0.90 20.87 29.59 -169.99 -5.03 15.84 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 18 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 20 C 0.13 2.51 6.67 -3.60 -0.02 2.49 16 21 C 0.09 1.36 6.50 -3.60 -0.02 1.34 16 22 C 0.01 0.08 5.12 -3.82 -0.02 0.06 16 23 C 0.46 4.52 3.27 37.16 0.12 4.64 16 24 F -0.18 -2.12 14.79 2.25 0.03 -2.09 16 25 F -0.19 -1.84 17.32 2.25 0.04 -1.80 16 26 F -0.17 -1.88 17.09 2.25 0.04 -1.85 16 27 H 0.08 0.61 7.28 -51.93 -0.38 0.24 16 28 H 0.07 0.43 7.84 -51.93 -0.41 0.02 16 29 H 0.03 0.30 8.13 -51.93 -0.42 -0.12 16 30 H 0.10 1.32 5.64 -51.93 -0.29 1.02 16 31 H 0.10 1.36 4.97 -51.94 -0.26 1.11 16 32 H 0.13 1.15 8.06 -52.48 -0.42 0.73 16 33 H 0.13 1.41 6.27 -52.49 -0.33 1.08 16 34 H 0.08 1.55 7.02 -51.93 -0.36 1.18 16 35 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.08 2.00 6.89 -51.93 -0.36 1.64 16 37 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 39 H 0.07 1.25 7.93 -51.93 -0.41 0.84 16 40 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.08 0.91 5.45 -51.93 -0.28 0.63 16 43 H 0.09 0.70 7.98 -51.93 -0.41 0.29 16 44 H 0.12 0.68 7.73 -51.93 -0.40 0.27 16 LS Contribution 361.77 15.07 5.45 5.45 Total: -1.00 -30.72 361.77 -7.25 -37.97 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -5.98 Total: -0.04 kcal Atomic # 6 Polarization: 13.48 SS G_CDS: -0.42 Total: 13.05 kcal Atomic # 7 Polarization: -54.75 SS G_CDS: -1.44 Total: -56.19 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: 0.07 Total: -10.35 kcal Atomic # 9 Polarization: -5.84 SS G_CDS: 0.11 Total: -5.73 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.03 Total: 15.84 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.72 -7.25 -37.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492865826.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.864 kcal (2) G-P(sol) polarization free energy of solvation -30.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds