Wall clock time and date at job start Tue Mar 31 2020 18:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46896 * 111.00268 * 2 1 4 4 C 1.50700 * 109.46920 * 300.20612 * 3 2 1 5 5 C 1.32995 * 120.00016 * 130.53955 * 4 3 2 6 6 C 1.47099 * 120.00133 * 9.67054 * 5 4 3 7 7 O 1.21622 * 119.99760 * 18.51162 * 6 5 4 8 8 N 1.34774 * 120.00340 * 198.51347 * 6 5 4 9 9 C 1.46962 * 120.59557 * 185.57459 * 8 6 5 10 10 C 1.53366 * 108.63680 * 124.75141 * 9 8 6 11 11 N 1.46971 * 108.63546 * 49.42361 * 10 9 8 12 12 C 1.36929 * 120.59416 * 124.74877 * 11 10 9 13 13 H 1.08001 * 120.00586 * 219.85924 * 12 11 10 14 14 C 1.38816 * 119.99841 * 39.86717 * 12 11 10 15 15 N 1.31616 * 120.00046 * 17.16176 * 14 12 11 16 16 Si 1.86800 * 119.99985 * 197.16435 * 14 12 11 17 17 H 1.48498 * 109.47162 * 89.99569 * 16 14 12 18 18 H 1.48497 * 109.47499 * 209.99821 * 16 14 12 19 19 H 1.48505 * 109.46900 * 329.99915 * 16 14 12 20 20 C 1.46965 * 118.80907 * 304.77980 * 11 10 9 21 21 C 1.46968 * 120.59182 * 5.55401 * 8 6 5 22 22 C 1.46906 * 110.99848 * 123.95469 * 2 1 3 23 23 C 1.53007 * 109.46818 * 159.19493 * 22 2 1 24 24 F 1.39890 * 109.47202 * 67.75353 * 23 22 2 25 25 F 1.39905 * 109.46694 * 187.75404 * 23 22 2 26 26 F 1.39901 * 109.47049 * 307.74797 * 23 22 2 27 27 H 1.08994 * 109.47264 * 65.25662 * 1 2 3 28 28 H 1.09003 * 109.47364 * 185.25598 * 1 2 3 29 29 H 1.08993 * 109.47131 * 305.25396 * 1 2 3 30 30 H 1.09001 * 109.47308 * 180.20903 * 3 2 1 31 31 H 1.09001 * 109.47136 * 60.20492 * 3 2 1 32 32 H 1.08003 * 120.00004 * 310.53653 * 4 3 2 33 33 H 1.08000 * 119.99872 * 189.68016 * 5 4 3 34 34 H 1.09001 * 109.60897 * 5.00939 * 9 8 6 35 35 H 1.09005 * 109.61072 * 244.49731 * 9 8 6 36 36 H 1.09000 * 109.61526 * 169.17036 * 10 9 8 37 37 H 1.08998 * 109.61162 * 289.51257 * 10 9 8 38 38 H 0.97002 * 120.00123 * 180.02562 * 15 14 12 39 39 H 1.09000 * 109.60950 * 174.97354 * 20 11 10 40 40 H 1.09005 * 109.60857 * 295.47577 * 20 11 10 41 41 H 1.08992 * 109.60863 * 115.50537 * 21 8 6 42 42 H 1.08997 * 109.74805 * 355.07387 * 21 8 6 43 43 H 1.09001 * 109.46924 * 279.18887 * 22 2 1 44 44 H 1.08999 * 109.47302 * 39.19712 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.5082 2.0965 -1.2279 5 6 0.9571 3.3015 -1.1137 6 6 1.0135 4.0174 0.1700 7 8 1.8260 3.6900 1.0137 8 7 0.1648 5.0362 0.4114 9 6 0.2885 5.8386 1.6364 10 6 0.4209 7.3152 1.2438 11 7 -0.6446 7.6440 0.2863 12 6 -1.5069 8.6790 0.5316 13 1 -2.5552 8.5768 0.2925 14 6 -1.0338 9.8597 1.0874 15 7 0.2552 10.1253 1.0694 16 14 -2.2264 11.0715 1.8611 17 1 -2.3930 10.7511 3.3014 18 1 -1.6931 12.4501 1.7191 19 1 -3.5414 10.9766 1.1776 20 6 -0.7684 6.8415 -0.9386 21 6 -0.9008 5.3648 -0.5460 22 6 1.9954 -0.7660 1.1376 23 6 3.4371 -1.1871 0.8455 24 9 4.2578 -0.0545 0.8211 25 9 3.8789 -2.0617 1.8441 26 9 3.4927 -1.8302 -0.3957 27 1 -0.3633 0.4301 -0.9333 28 1 -0.3634 -1.0234 0.0941 29 1 -0.3633 0.5931 0.8391 30 1 3.0851 1.3423 -0.0037 31 1 1.6490 1.8936 0.8918 32 1 1.6065 1.6376 -2.2007 33 1 0.4681 3.7544 -1.9636 34 1 1.1740 5.5266 2.1902 35 1 -0.5993 5.7025 2.2541 36 1 0.3209 7.9402 2.1312 37 1 1.3944 7.4857 0.7842 38 1 0.5859 10.9502 1.4581 39 1 -1.6537 7.1536 -1.4925 40 1 0.1194 6.9776 -1.5564 41 1 -1.8731 5.1950 -0.0837 42 1 -0.8037 4.7401 -1.4338 43 1 1.9724 -0.1468 2.0344 44 1 1.3821 -1.6536 1.2930 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492865826.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:21 Heat of formation + Delta-G solvation = -141.424262 kcal Electronic energy + Delta-G solvation = -29697.832313 eV Core-core repulsion = 25043.389222 eV Total energy + Delta-G solvation = -4654.443091 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.156 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -51.05118 -48.63125 -48.48024 -41.22471 -39.07976 -38.19656 -35.60709 -34.49588 -33.09380 -32.07923 -30.58122 -29.03353 -28.13953 -25.82854 -25.17307 -24.54706 -23.38483 -22.58434 -21.36045 -19.69911 -19.51825 -19.45099 -18.70638 -18.49039 -17.86615 -16.85105 -16.76656 -16.56427 -16.33200 -15.87094 -15.54913 -15.46657 -15.39154 -15.29229 -15.14656 -14.98569 -14.97341 -14.71238 -14.67090 -14.47868 -14.21290 -14.01847 -13.53307 -13.38544 -13.17394 -13.09839 -12.74643 -12.65847 -12.62501 -12.51154 -12.36599 -12.22609 -12.04014 -11.93914 -11.63557 -10.69987 -10.61830 -10.44422 -9.77449 -9.43556 -8.55373 -7.90103 -5.52649 0.39730 1.46386 1.48179 1.56972 1.76727 2.09931 2.18024 2.48700 2.59665 2.89409 3.08591 3.22295 3.46213 3.59209 3.66393 3.87857 4.06217 4.22041 4.24737 4.28508 4.34107 4.37973 4.48733 4.53366 4.58896 4.63196 4.73354 4.78540 4.87086 4.90578 5.03377 5.03593 5.21015 5.27837 5.38355 5.40458 5.60431 5.65899 5.68551 5.85274 6.40011 6.56087 7.09033 7.19515 7.74230 8.35533 9.11794 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.029534 B = 0.002255 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.826441 B =12411.885152 C =12736.731711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.538 5.538 3 C 0.037 3.963 4 C -0.043 4.043 5 C -0.216 4.216 6 C 0.530 3.470 7 O -0.584 6.584 8 N -0.598 5.598 9 C 0.104 3.896 10 C 0.175 3.825 11 N -0.606 5.606 12 C -0.274 4.274 13 H 0.068 0.932 14 C -0.037 4.037 15 N -0.930 5.930 16 Si 0.966 3.034 17 H -0.284 1.284 18 H -0.297 1.297 19 H -0.263 1.263 20 C 0.124 3.876 21 C 0.100 3.900 22 C 0.011 3.989 23 C 0.455 3.545 24 F -0.195 7.195 25 F -0.187 7.187 26 F -0.179 7.179 27 H 0.085 0.915 28 H 0.094 0.906 29 H 0.023 0.977 30 H 0.088 0.912 31 H 0.069 0.931 32 H 0.160 0.840 33 H 0.162 0.838 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.049 0.951 37 H -0.006 1.006 38 H 0.252 0.748 39 H 0.078 0.922 40 H 0.013 0.987 41 H 0.074 0.926 42 H 0.121 0.879 43 H 0.085 0.915 44 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.840 -24.601 -4.138 24.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.263 5.263 3 C -0.089 4.089 4 C -0.063 4.063 5 C -0.237 4.237 6 C 0.324 3.676 7 O -0.467 6.467 8 N -0.329 5.329 9 C -0.020 4.020 10 C 0.049 3.951 11 N -0.330 5.330 12 C -0.404 4.404 13 H 0.085 0.915 14 C -0.235 4.235 15 N -0.573 5.573 16 Si 0.794 3.206 17 H -0.211 1.211 18 H -0.223 1.223 19 H -0.187 1.187 20 C -0.002 4.002 21 C -0.023 4.023 22 C -0.119 4.119 23 C 0.400 3.600 24 F -0.176 7.176 25 F -0.169 7.169 26 F -0.161 7.161 27 H 0.104 0.896 28 H 0.112 0.888 29 H 0.042 0.958 30 H 0.105 0.895 31 H 0.087 0.913 32 H 0.178 0.822 33 H 0.179 0.821 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.067 0.933 37 H 0.012 0.988 38 H 0.060 0.940 39 H 0.096 0.904 40 H 0.031 0.969 41 H 0.092 0.908 42 H 0.138 0.862 43 H 0.103 0.897 44 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -0.197 -24.824 -4.100 25.161 hybrid contribution 0.051 1.748 1.293 2.175 sum -0.147 -23.076 -2.807 23.247 Atomic orbital electron populations 1.22517 0.84032 1.03451 1.02073 1.61816 1.10392 1.13626 1.40431 1.22119 1.01332 0.87295 0.98171 1.23666 0.89502 0.93328 0.99835 1.22793 1.06231 0.98056 0.96644 1.19342 0.79963 0.80087 0.88254 1.90645 1.40076 1.66620 1.49404 1.48062 1.31794 1.30954 1.22056 1.22038 1.01470 0.91774 0.86735 1.20743 0.89818 0.91429 0.93158 1.44100 1.35298 1.35016 1.18550 1.19385 0.89866 0.91563 1.39585 0.91463 1.26145 0.97134 0.98492 1.01721 1.70194 1.14496 1.25494 1.47127 0.85306 0.79122 0.77624 0.78577 1.21092 1.22342 1.18679 1.21524 0.99453 0.90625 0.88550 1.22425 0.89689 0.97034 0.93165 1.23325 0.90256 1.03173 0.95151 1.20814 0.90703 0.74402 0.74073 1.93129 1.76404 1.51897 1.96197 1.93178 1.91371 1.70571 1.61751 1.93178 1.97052 1.82136 1.43688 0.89638 0.88764 0.95787 0.89457 0.91337 0.82238 0.82058 0.90694 0.91592 0.93291 0.98811 0.93959 0.90377 0.96890 0.90783 0.86168 0.89679 0.83460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.22 127.69 1.18 1.51 16 2 N -0.54 -9.03 4.51 -927.04 -4.18 -13.21 16 3 C 0.04 0.82 4.33 85.56 0.37 1.19 16 4 C -0.04 -0.83 8.45 24.52 0.21 -0.62 16 5 C -0.22 -4.74 9.10 23.43 0.21 -4.52 16 6 C 0.53 16.84 7.25 86.57 0.63 17.47 16 7 O -0.58 -22.01 12.99 -4.10 -0.05 -22.06 16 8 N -0.60 -20.09 2.95 -822.30 -2.42 -22.51 16 9 C 0.10 4.09 6.58 86.41 0.57 4.66 16 10 C 0.18 8.43 5.51 86.41 0.48 8.91 16 11 N -0.61 -29.23 2.88 -698.21 -2.01 -31.24 16 12 C -0.27 -14.40 9.42 84.04 0.79 -13.61 16 13 H 0.07 3.40 7.89 -2.91 -0.02 3.38 16 14 C -0.04 -2.04 4.85 84.86 0.41 -1.63 16 15 N -0.93 -54.76 12.10 21.65 0.26 -54.50 16 16 Si 0.97 43.40 29.59 68.60 2.03 45.43 16 17 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 18 H -0.30 -13.55 7.11 99.48 0.71 -12.84 16 19 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 20 C 0.12 4.68 6.67 86.41 0.58 5.25 16 21 C 0.10 2.85 6.50 86.41 0.56 3.41 16 22 C 0.01 0.16 5.12 86.30 0.44 0.60 16 23 C 0.45 8.45 3.27 71.98 0.24 8.68 16 24 F -0.19 -4.54 14.79 44.97 0.66 -3.88 16 25 F -0.19 -3.47 17.32 44.97 0.78 -2.69 16 26 F -0.18 -3.59 17.09 44.97 0.77 -2.82 16 27 H 0.08 1.00 7.28 -2.39 -0.02 0.98 16 28 H 0.09 0.77 7.84 -2.39 -0.02 0.75 16 29 H 0.02 0.36 8.13 -2.39 -0.02 0.34 16 30 H 0.09 2.22 5.64 -2.39 -0.01 2.21 16 31 H 0.07 1.94 4.97 -2.54 -0.01 1.93 16 32 H 0.16 2.13 8.06 -2.91 -0.02 2.10 16 33 H 0.16 2.62 6.27 -2.91 -0.02 2.60 16 34 H 0.07 2.99 7.02 -2.39 -0.02 2.98 16 35 H 0.07 2.49 8.14 -2.38 -0.02 2.47 16 36 H 0.05 2.60 6.89 -2.39 -0.02 2.59 16 37 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 38 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 39 H 0.08 2.74 7.93 -2.39 -0.02 2.72 16 40 H 0.01 0.52 8.14 -2.38 -0.02 0.50 16 41 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.12 2.36 5.45 -2.39 -0.01 2.34 16 43 H 0.09 1.29 7.98 -2.39 -0.02 1.27 16 44 H 0.15 1.23 7.73 -2.39 -0.02 1.21 16 Total: -1.00 -69.16 361.77 3.51 -65.65 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: 1.02 Total: 10.52 kcal Atomic # 6 Polarization: 24.64 SS G_CDS: 6.66 Total: 31.30 kcal Atomic # 7 Polarization: -113.10 SS G_CDS: -8.36 Total: -121.46 kcal Atomic # 8 Polarization: -22.01 SS G_CDS: -0.05 Total: -22.06 kcal Atomic # 9 Polarization: -11.60 SS G_CDS: 2.21 Total: -9.39 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -69.16 3.51 -65.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492865826.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.771 kcal (2) G-P(sol) polarization free energy of solvation -69.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds