Wall clock time and date at job start Tue Mar 31 2020 18:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46496 * 119.99738 * 2 1 4 4 C 1.50707 * 109.46842 * 265.33025 * 3 2 1 5 5 C 1.38256 * 120.00164 * 4.99216 * 4 3 2 6 6 C 1.38205 * 120.00005 * 179.79038 * 5 4 3 7 7 C 1.38258 * 120.00282 * 0.46176 * 6 5 4 8 8 C 1.38218 * 119.99644 * 359.77210 * 7 6 5 9 9 C 1.38211 * 119.99889 * 185.27130 * 4 3 2 10 10 N 1.48021 * 120.00274 * 359.97424 * 9 4 3 11 11 O 1.21797 * 120.00119 * 174.26090 * 10 9 4 12 12 O 1.21806 * 119.99785 * 354.27037 * 10 9 4 13 13 C 1.34774 * 119.99679 * 179.97438 * 2 1 3 14 14 O 1.21288 * 119.99242 * 180.02562 * 13 2 1 15 15 C 1.50697 * 120.00405 * 359.97438 * 13 2 1 16 16 H 1.08994 * 109.47308 * 320.00004 * 15 13 2 17 17 N 1.46900 * 109.47279 * 199.99766 * 15 13 2 18 18 C 1.53004 * 109.46677 * 80.00403 * 15 13 2 19 19 C 1.53004 * 109.46685 * 185.00244 * 18 15 13 20 20 C 1.53004 * 109.46685 * 180.02562 * 19 18 15 21 21 C 1.50700 * 109.46754 * 179.97438 * 20 19 18 22 22 H 1.07998 * 120.00384 * 359.97438 * 21 20 19 23 23 C 1.37881 * 119.99956 * 180.02562 * 21 20 19 24 24 N 1.31509 * 120.00115 * 179.97438 * 23 21 20 25 25 Si 1.86797 * 119.99873 * 359.97438 * 23 21 20 26 26 H 1.48505 * 109.46929 * 90.00483 * 25 23 21 27 27 H 1.48499 * 109.47235 * 210.00068 * 25 23 21 28 28 H 1.48493 * 109.47423 * 330.00471 * 25 23 21 29 29 H 1.09001 * 109.46782 * 274.81836 * 1 2 3 30 30 H 1.08996 * 109.47254 * 34.81587 * 1 2 3 31 31 H 1.09003 * 109.47011 * 154.81523 * 1 2 3 32 32 H 1.09002 * 109.47549 * 25.32964 * 3 2 1 33 33 H 1.09000 * 109.47264 * 145.33386 * 3 2 1 34 34 H 1.08006 * 119.99461 * 0.02562 * 5 4 3 35 35 H 1.08004 * 120.00097 * 180.26344 * 6 5 4 36 36 H 1.07995 * 120.00249 * 179.79239 * 7 6 5 37 37 H 1.08000 * 119.99936 * 179.97438 * 8 7 6 38 38 H 1.00897 * 111.00444 * 300.00672 * 17 15 13 39 39 H 1.00902 * 110.99918 * 63.95766 * 17 15 13 40 40 H 1.09000 * 109.47327 * 65.00239 * 18 15 13 41 41 H 1.08995 * 109.47101 * 304.99844 * 18 15 13 42 42 H 1.08995 * 109.47578 * 59.99615 * 19 18 15 43 43 H 1.09004 * 109.46626 * 299.99229 * 19 18 15 44 44 H 1.08995 * 109.47101 * 299.99600 * 20 19 18 45 45 H 1.09000 * 109.47327 * 59.99995 * 20 19 18 46 46 H 0.97000 * 120.00359 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.5488 1.6459 -1.4162 5 6 2.0858 0.8807 -2.4705 6 6 2.4044 1.2291 -3.7694 7 6 3.1940 2.3373 -4.0141 8 6 3.6609 3.0995 -2.9598 9 6 3.3386 2.7534 -1.6607 10 7 3.8390 3.5695 -0.5316 11 8 4.6189 4.4819 -0.7383 12 8 3.4710 3.3284 0.6042 13 6 2.1389 -1.1672 0.0005 14 8 3.3518 -1.1671 0.0010 15 6 1.3854 -2.4723 0.0017 16 1 0.5223 -2.3929 0.6625 17 7 2.2679 -3.5468 0.4757 18 6 0.9131 -2.7896 -1.4186 19 6 0.0431 -4.0481 -1.3974 20 6 -0.4287 -4.3658 -2.8178 21 6 -1.2851 -5.6057 -2.7970 22 1 -1.4736 -6.1163 -1.8642 23 6 -1.8271 -6.0889 -3.9691 24 7 -2.5740 -7.1712 -3.9511 25 14 -1.5005 -5.2063 -5.5827 26 1 -0.2752 -5.7617 -6.2115 27 1 -2.6561 -5.3991 -6.4951 28 1 -1.3105 -3.7564 -5.3242 29 1 -0.3633 0.0863 1.0241 30 1 -0.3633 0.8437 -0.5867 31 1 -0.3633 -0.9300 -0.4373 32 1 1.5748 2.0479 0.4397 33 1 3.1112 1.1608 0.5845 34 1 1.4720 0.0129 -2.2792 35 1 2.0392 0.6338 -4.5933 36 1 3.4457 2.6076 -5.0289 37 1 4.2781 3.9650 -3.1509 38 1 3.0763 -3.6404 -0.1207 39 1 2.5419 -3.3931 1.4346 40 1 1.7781 -2.9567 -2.0604 41 1 0.3313 -1.9522 -1.8036 42 1 -0.8219 -3.8812 -0.7556 43 1 0.6251 -4.8856 -1.0124 44 1 -1.0104 -3.5285 -3.2032 45 1 0.4365 -4.5330 -3.4592 46 1 -2.9556 -7.5109 -4.7756 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594427992.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:02 Heat of formation + Delta-G solvation = -14.021166 kcal Electronic energy + Delta-G solvation = -29261.137592 eV Core-core repulsion = 25154.075854 eV Total energy + Delta-G solvation = -4107.061737 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.56900 -40.79314 -39.56857 -37.00459 -36.20366 -35.96829 -33.47314 -32.78423 -32.04807 -31.62337 -28.87643 -27.98388 -26.94664 -26.41934 -24.79727 -23.12122 -22.55858 -21.71043 -20.18192 -19.65815 -19.13435 -18.90495 -17.91998 -17.49012 -17.03748 -16.74364 -16.65370 -15.99574 -15.69657 -15.28717 -15.01647 -14.55634 -14.31822 -14.13049 -13.80889 -13.72731 -13.35071 -13.18628 -12.87993 -12.70509 -12.68998 -12.48889 -12.11524 -11.97935 -11.80274 -11.76693 -11.46132 -11.40009 -11.32534 -10.92926 -10.78649 -10.43518 -10.03322 -9.97176 -9.73757 -9.59559 -9.57763 -9.21188 -9.17913 -8.72739 -8.55846 -6.05858 -4.03410 -0.48974 0.49440 1.00975 1.08884 2.29168 2.56760 2.84888 3.26316 3.33498 3.35077 3.85942 3.97135 4.24460 4.27964 4.41857 4.44186 4.52175 4.55857 4.71205 4.77889 4.90340 4.97439 5.01213 5.13396 5.19526 5.24651 5.28002 5.35358 5.39150 5.52405 5.66717 5.67139 5.82574 5.83779 6.03891 6.15622 6.16265 6.53946 6.66769 6.85557 6.90725 7.07134 7.31560 7.34735 7.37700 7.44372 7.78243 7.82936 8.53704 9.00744 9.56720 11.07853 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014968 B = 0.002883 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.254874 B = 9709.882089 C =10986.498156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.618 5.618 3 C 0.148 3.852 4 C -0.028 4.028 5 C -0.111 4.111 6 C -0.059 4.059 7 C -0.123 4.123 8 C -0.054 4.054 9 C -0.046 4.046 10 N 0.033 4.967 11 O -0.165 6.165 12 O -0.164 6.164 13 C 0.481 3.519 14 O -0.540 6.540 15 C 0.078 3.922 16 H 0.105 0.895 17 N -0.810 5.810 18 C -0.110 4.110 19 C -0.092 4.092 20 C -0.015 4.015 21 C -0.518 4.518 22 H 0.072 0.928 23 C 0.065 3.935 24 N -0.904 5.904 25 Si 0.880 3.120 26 H -0.278 1.278 27 H -0.289 1.289 28 H -0.267 1.267 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.147 0.853 35 H 0.146 0.854 36 H 0.148 0.852 37 H 0.153 0.847 38 H 0.350 0.650 39 H 0.341 0.659 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.052 0.948 43 H 0.070 0.930 44 H 0.011 0.989 45 H 0.008 0.992 46 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.272 22.375 4.100 24.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.353 5.353 3 C 0.025 3.975 4 C -0.031 4.031 5 C -0.129 4.129 6 C -0.077 4.077 7 C -0.142 4.142 8 C -0.073 4.073 9 C -0.130 4.130 10 N 0.550 4.450 11 O -0.379 6.379 12 O -0.378 6.378 13 C 0.268 3.732 14 O -0.416 6.416 15 C -0.038 4.038 16 H 0.123 0.877 17 N -0.339 5.339 18 C -0.148 4.148 19 C -0.130 4.130 20 C -0.052 4.052 21 C -0.556 4.556 22 H 0.090 0.910 23 C -0.136 4.136 24 N -0.543 5.543 25 Si 0.708 3.292 26 H -0.204 1.204 27 H -0.215 1.215 28 H -0.192 1.192 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.109 0.891 32 H 0.130 0.870 33 H 0.130 0.870 34 H 0.164 0.836 35 H 0.164 0.836 36 H 0.165 0.835 37 H 0.171 0.829 38 H 0.164 0.836 39 H 0.153 0.847 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.071 0.929 43 H 0.089 0.911 44 H 0.029 0.971 45 H 0.027 0.973 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 8.954 21.348 3.344 23.390 hybrid contribution 0.902 1.471 -0.621 1.834 sum 9.856 22.819 2.723 25.005 Atomic orbital electron populations 1.22133 0.78445 1.04536 1.02882 1.48115 1.07561 1.05498 1.74080 1.20714 0.99556 0.86182 0.91004 1.20327 0.92533 0.91276 0.98919 1.21212 1.00554 1.00016 0.91146 1.21742 0.93433 0.95041 0.97534 1.21255 0.98365 0.95218 0.99315 1.21048 0.96893 0.99939 0.89395 1.20879 1.07621 0.97514 0.86956 1.43588 0.99066 1.00204 1.02146 1.94534 1.29760 1.22640 1.91000 1.94512 1.61400 1.73915 1.07934 1.22738 0.88910 0.86856 0.74654 1.90695 1.14218 1.87463 1.49260 1.21800 0.96408 0.85052 1.00568 0.87703 1.59040 1.24257 1.43126 1.07439 1.21771 1.00529 1.00546 0.91939 1.21378 0.97373 0.94913 0.99350 1.19594 0.95863 0.97026 0.92720 1.21162 1.29525 1.09194 0.95674 0.90954 1.25052 0.94803 0.94750 0.99024 1.69914 1.34151 1.22536 1.27738 0.86781 0.77825 0.80682 0.83937 1.20388 1.21483 1.19215 0.91630 0.90911 0.89069 0.87045 0.87014 0.83584 0.83638 0.83452 0.82911 0.83601 0.84698 0.91820 0.91936 0.92891 0.91097 0.97077 0.97324 0.92789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.44 9.49 59.85 0.57 1.00 16 2 N -0.62 -5.92 1.72 -182.95 -0.32 -6.23 16 3 C 0.15 1.48 4.03 -5.19 -0.02 1.46 16 4 C -0.03 -0.28 5.85 -104.62 -0.61 -0.89 16 5 C -0.11 -1.03 9.13 -39.59 -0.36 -1.39 16 6 C -0.06 -0.45 10.05 -39.59 -0.40 -0.84 16 7 C -0.12 -0.81 10.05 -39.58 -0.40 -1.21 16 8 C -0.05 -0.44 9.56 -39.58 -0.38 -0.81 16 9 C -0.05 -0.48 6.83 -79.95 -0.55 -1.02 16 10 N 0.03 0.40 4.45 33.96 0.15 0.55 16 11 O -0.16 -2.07 18.46 -29.46 -0.54 -2.61 16 12 O -0.16 -2.04 15.46 -29.46 -0.46 -2.49 16 13 C 0.48 5.79 6.14 -10.99 -0.07 5.72 16 14 O -0.54 -8.27 15.91 5.55 0.09 -8.18 16 15 C 0.08 0.92 2.30 -68.86 -0.16 0.76 16 16 H 0.11 1.11 7.13 -51.93 -0.37 0.74 16 17 N -0.81 -10.07 8.44 -5.66 -0.05 -10.12 16 18 C -0.11 -1.49 4.49 -26.73 -0.12 -1.61 16 19 C -0.09 -1.66 5.04 -26.73 -0.13 -1.79 16 20 C -0.01 -0.33 4.04 -27.88 -0.11 -0.44 16 21 C -0.52 -14.36 9.66 -34.44 -0.33 -14.69 16 22 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 23 C 0.06 1.84 5.47 -17.82 -0.10 1.75 16 24 N -0.90 -27.53 13.96 55.43 0.77 -26.76 16 25 Si 0.88 21.09 27.47 -169.99 -4.67 16.42 16 26 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 27 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 28 H -0.27 -6.01 6.54 56.52 0.37 -5.64 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.41 8.11 -51.93 -0.42 -0.01 16 31 H 0.09 0.68 4.72 -51.93 -0.25 0.43 16 32 H 0.11 0.93 7.38 -51.93 -0.38 0.55 16 33 H 0.11 1.36 6.56 -51.93 -0.34 1.02 16 34 H 0.15 1.38 5.93 -52.48 -0.31 1.07 16 35 H 0.15 0.82 8.06 -52.48 -0.42 0.40 16 36 H 0.15 0.55 8.06 -52.49 -0.42 0.13 16 37 H 0.15 0.99 7.62 -52.49 -0.40 0.59 16 38 H 0.35 4.53 8.58 -39.29 -0.34 4.19 16 39 H 0.34 3.74 9.06 -39.29 -0.36 3.38 16 40 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.06 0.74 6.24 -51.93 -0.32 0.42 16 42 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.07 1.37 7.75 -51.93 -0.40 0.97 16 44 H 0.01 0.24 7.20 -51.93 -0.37 -0.13 16 45 H 0.01 0.19 7.57 -51.93 -0.39 -0.20 16 46 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 379.45 15.07 5.72 5.72 Total: -1.00 -33.83 379.45 -8.83 -42.66 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -6.36 Total: 5.07 kcal Atomic # 6 Polarization: -10.85 SS G_CDS: -3.17 Total: -14.02 kcal Atomic # 7 Polarization: -43.12 SS G_CDS: 0.56 Total: -42.56 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: -0.91 Total: -13.28 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.67 Total: 16.42 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.83 -8.83 -42.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594427992.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.641 kcal (2) G-P(sol) polarization free energy of solvation -33.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds