Wall clock time and date at job start Tue Mar 31 2020 18:30:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46496 * 119.99738 * 2 1 4 4 C 1.50707 * 109.46842 * 265.33025 * 3 2 1 5 5 C 1.38256 * 120.00164 * 4.99216 * 4 3 2 6 6 C 1.38205 * 120.00005 * 179.79038 * 5 4 3 7 7 C 1.38258 * 120.00282 * 0.46176 * 6 5 4 8 8 C 1.38218 * 119.99644 * 359.77210 * 7 6 5 9 9 C 1.38211 * 119.99889 * 185.27130 * 4 3 2 10 10 N 1.48021 * 120.00274 * 359.97424 * 9 4 3 11 11 O 1.21797 * 120.00119 * 174.26090 * 10 9 4 12 12 O 1.21806 * 119.99785 * 354.27037 * 10 9 4 13 13 C 1.34774 * 119.99679 * 179.97438 * 2 1 3 14 14 O 1.21288 * 119.99242 * 180.02562 * 13 2 1 15 15 C 1.50697 * 120.00405 * 359.97438 * 13 2 1 16 16 H 1.08994 * 109.47308 * 320.00004 * 15 13 2 17 17 N 1.46900 * 109.47279 * 199.99766 * 15 13 2 18 18 C 1.53004 * 109.46677 * 80.00403 * 15 13 2 19 19 C 1.53004 * 109.46685 * 185.00244 * 18 15 13 20 20 C 1.53004 * 109.46685 * 180.02562 * 19 18 15 21 21 C 1.50700 * 109.46754 * 179.97438 * 20 19 18 22 22 H 1.07998 * 120.00384 * 359.97438 * 21 20 19 23 23 C 1.37881 * 119.99956 * 180.02562 * 21 20 19 24 24 N 1.31509 * 120.00115 * 179.97438 * 23 21 20 25 25 Si 1.86797 * 119.99873 * 359.97438 * 23 21 20 26 26 H 1.48505 * 109.46929 * 90.00483 * 25 23 21 27 27 H 1.48499 * 109.47235 * 210.00068 * 25 23 21 28 28 H 1.48493 * 109.47423 * 330.00471 * 25 23 21 29 29 H 1.09001 * 109.46782 * 274.81836 * 1 2 3 30 30 H 1.08996 * 109.47254 * 34.81587 * 1 2 3 31 31 H 1.09003 * 109.47011 * 154.81523 * 1 2 3 32 32 H 1.09002 * 109.47549 * 25.32964 * 3 2 1 33 33 H 1.09000 * 109.47264 * 145.33386 * 3 2 1 34 34 H 1.08006 * 119.99461 * 0.02562 * 5 4 3 35 35 H 1.08004 * 120.00097 * 180.26344 * 6 5 4 36 36 H 1.07995 * 120.00249 * 179.79239 * 7 6 5 37 37 H 1.08000 * 119.99936 * 179.97438 * 8 7 6 38 38 H 1.00897 * 111.00444 * 300.00672 * 17 15 13 39 39 H 1.00902 * 110.99918 * 63.95766 * 17 15 13 40 40 H 1.09000 * 109.47327 * 65.00239 * 18 15 13 41 41 H 1.08995 * 109.47101 * 304.99844 * 18 15 13 42 42 H 1.08995 * 109.47578 * 59.99615 * 19 18 15 43 43 H 1.09004 * 109.46626 * 299.99229 * 19 18 15 44 44 H 1.08995 * 109.47101 * 299.99600 * 20 19 18 45 45 H 1.09000 * 109.47327 * 59.99995 * 20 19 18 46 46 H 0.97000 * 120.00359 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.5488 1.6459 -1.4162 5 6 2.0858 0.8807 -2.4705 6 6 2.4044 1.2291 -3.7694 7 6 3.1940 2.3373 -4.0141 8 6 3.6609 3.0995 -2.9598 9 6 3.3386 2.7534 -1.6607 10 7 3.8390 3.5695 -0.5316 11 8 4.6189 4.4819 -0.7383 12 8 3.4710 3.3284 0.6042 13 6 2.1389 -1.1672 0.0005 14 8 3.3518 -1.1671 0.0010 15 6 1.3854 -2.4723 0.0017 16 1 0.5223 -2.3929 0.6625 17 7 2.2679 -3.5468 0.4757 18 6 0.9131 -2.7896 -1.4186 19 6 0.0431 -4.0481 -1.3974 20 6 -0.4287 -4.3658 -2.8178 21 6 -1.2851 -5.6057 -2.7970 22 1 -1.4736 -6.1163 -1.8642 23 6 -1.8271 -6.0889 -3.9691 24 7 -2.5740 -7.1712 -3.9511 25 14 -1.5005 -5.2063 -5.5827 26 1 -0.2752 -5.7617 -6.2115 27 1 -2.6561 -5.3991 -6.4951 28 1 -1.3105 -3.7564 -5.3242 29 1 -0.3633 0.0863 1.0241 30 1 -0.3633 0.8437 -0.5867 31 1 -0.3633 -0.9300 -0.4373 32 1 1.5748 2.0479 0.4397 33 1 3.1112 1.1608 0.5845 34 1 1.4720 0.0129 -2.2792 35 1 2.0392 0.6338 -4.5933 36 1 3.4457 2.6076 -5.0289 37 1 4.2781 3.9650 -3.1509 38 1 3.0763 -3.6404 -0.1207 39 1 2.5419 -3.3931 1.4346 40 1 1.7781 -2.9567 -2.0604 41 1 0.3313 -1.9522 -1.8036 42 1 -0.8219 -3.8812 -0.7556 43 1 0.6251 -4.8856 -1.0124 44 1 -1.0104 -3.5285 -3.2032 45 1 0.4365 -4.5330 -3.4592 46 1 -2.9556 -7.5109 -4.7756 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594427992.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:01 Heat of formation + Delta-G solvation = -35.289903 kcal Electronic energy + Delta-G solvation = -29262.059873 eV Core-core repulsion = 25154.075854 eV Total energy + Delta-G solvation = -4107.984019 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.40947 -41.64786 -40.29635 -37.88712 -37.27491 -36.93323 -35.21327 -33.50478 -33.32569 -32.69763 -30.08286 -28.96703 -27.73620 -27.33796 -25.99975 -24.09324 -23.41887 -22.77905 -21.67016 -20.50338 -19.97208 -19.75387 -18.84566 -18.78335 -18.37310 -17.70083 -17.46274 -16.97688 -16.49010 -16.24242 -15.99298 -15.69031 -15.58505 -15.09215 -14.78091 -14.70091 -14.51766 -14.27585 -13.93509 -13.72806 -13.53168 -13.36023 -13.30042 -13.06149 -12.92812 -12.71407 -12.63466 -12.35852 -12.32259 -12.25480 -12.17471 -11.73868 -11.59370 -11.37241 -11.21569 -11.08206 -10.70813 -10.67435 -10.22572 -9.95275 -9.72137 -8.23461 -6.27127 -1.27863 -0.11025 0.23617 0.31832 1.36795 1.39474 1.41418 1.53029 1.77980 2.23648 2.41057 3.12348 3.19147 3.29822 3.38867 3.60994 3.69560 3.89049 3.95687 3.96224 4.10082 4.12655 4.12937 4.21234 4.37546 4.46370 4.58813 4.61850 4.64772 4.73723 4.84208 4.92131 4.96755 5.07390 5.08576 5.12856 5.14599 5.21721 5.31399 5.47388 5.68083 5.73932 5.78917 5.98320 6.19927 6.36516 6.42633 6.43166 6.82514 6.94087 7.37286 8.93728 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014968 B = 0.002883 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.254874 B = 9709.882089 C =10986.498156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.608 5.608 3 C 0.152 3.848 4 C -0.040 4.040 5 C -0.123 4.123 6 C -0.054 4.054 7 C -0.111 4.111 8 C -0.056 4.056 9 C -0.065 4.065 10 N 0.034 4.966 11 O -0.182 6.182 12 O -0.182 6.182 13 C 0.485 3.515 14 O -0.577 6.577 15 C 0.084 3.916 16 H 0.121 0.879 17 N -0.820 5.820 18 C -0.098 4.098 19 C -0.083 4.083 20 C -0.012 4.012 21 C -0.529 4.529 22 H 0.028 0.972 23 C -0.003 4.003 24 N -0.957 5.957 25 Si 0.953 3.047 26 H -0.272 1.272 27 H -0.288 1.288 28 H -0.235 1.235 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.125 0.875 33 H 0.086 0.914 34 H 0.146 0.854 35 H 0.171 0.829 36 H 0.183 0.817 37 H 0.167 0.833 38 H 0.346 0.654 39 H 0.348 0.652 40 H 0.058 0.942 41 H 0.088 0.912 42 H 0.053 0.947 43 H 0.050 0.950 44 H 0.027 0.973 45 H 0.012 0.988 46 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.281 24.673 1.937 26.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.341 5.341 3 C 0.029 3.971 4 C -0.043 4.043 5 C -0.142 4.142 6 C -0.072 4.072 7 C -0.130 4.130 8 C -0.075 4.075 9 C -0.149 4.149 10 N 0.546 4.454 11 O -0.395 6.395 12 O -0.393 6.393 13 C 0.273 3.727 14 O -0.457 6.457 15 C -0.032 4.032 16 H 0.139 0.861 17 N -0.349 5.349 18 C -0.136 4.136 19 C -0.120 4.120 20 C -0.050 4.050 21 C -0.567 4.567 22 H 0.046 0.954 23 C -0.199 4.199 24 N -0.598 5.598 25 Si 0.776 3.224 26 H -0.198 1.198 27 H -0.214 1.214 28 H -0.158 1.158 29 H 0.099 0.901 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.142 0.858 33 H 0.104 0.896 34 H 0.163 0.837 35 H 0.188 0.812 36 H 0.201 0.799 37 H 0.184 0.816 38 H 0.160 0.840 39 H 0.161 0.839 40 H 0.076 0.924 41 H 0.106 0.894 42 H 0.072 0.928 43 H 0.068 0.932 44 H 0.045 0.955 45 H 0.030 0.970 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 8.952 23.694 1.228 25.358 hybrid contribution 0.843 0.675 0.079 1.083 sum 9.795 24.369 1.307 26.296 Atomic orbital electron populations 1.22363 0.76494 1.05321 1.04372 1.48104 1.08644 1.04676 1.72635 1.20620 0.98808 0.86478 0.91205 1.20344 0.93218 0.91689 0.99029 1.21322 1.01080 0.99983 0.91795 1.22113 0.92560 0.95154 0.97382 1.21675 0.96829 0.94068 1.00384 1.21390 0.96735 1.00566 0.88775 1.21098 1.08854 0.97938 0.87008 1.43889 0.98772 1.00167 1.02556 1.94509 1.30418 1.23423 1.91101 1.94494 1.61797 1.74178 1.08854 1.22630 0.88303 0.87403 0.74400 1.90685 1.15788 1.87943 1.51258 1.21720 0.96733 0.84865 0.99834 0.86087 1.59073 1.24262 1.43602 1.07955 1.21592 0.99738 0.99087 0.93163 1.21173 0.97843 0.96431 0.96589 1.19565 0.95053 0.94782 0.95575 1.21576 1.30126 1.10929 0.94066 0.95387 1.26111 0.94487 0.95607 1.03676 1.70093 1.35931 1.24783 1.29002 0.85618 0.77645 0.80975 0.78127 1.19761 1.21430 1.15802 0.90068 0.89085 0.89071 0.85752 0.89649 0.83686 0.81185 0.79931 0.81579 0.84045 0.83917 0.92371 0.89395 0.92781 0.93164 0.95505 0.96957 0.92727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.61 9.49 127.77 1.21 1.83 16 2 N -0.61 -10.58 1.72 -851.11 -1.47 -12.05 16 3 C 0.15 2.93 4.03 85.64 0.34 3.27 16 4 C -0.04 -0.76 5.85 -19.86 -0.12 -0.88 16 5 C -0.12 -1.97 9.13 22.27 0.20 -1.76 16 6 C -0.05 -0.60 10.05 22.27 0.22 -0.38 16 7 C -0.11 -1.03 10.05 22.27 0.22 -0.80 16 8 C -0.06 -0.77 9.56 22.27 0.21 -0.56 16 9 C -0.06 -1.28 6.83 36.37 0.25 -1.03 16 10 N 0.03 0.81 4.45 -46.46 -0.21 0.61 16 11 O -0.18 -4.60 18.46 18.89 0.35 -4.25 16 12 O -0.18 -4.63 15.46 18.88 0.29 -4.34 16 13 C 0.49 11.04 6.14 87.66 0.54 11.58 16 14 O -0.58 -17.50 15.91 -3.05 -0.05 -17.55 16 15 C 0.08 1.85 2.30 44.17 0.10 1.95 16 16 H 0.12 2.27 7.13 -2.39 -0.02 2.25 16 17 N -0.82 -19.88 8.44 -171.81 -1.45 -21.33 16 18 C -0.10 -2.43 4.49 30.60 0.14 -2.29 16 19 C -0.08 -2.86 5.04 30.60 0.15 -2.70 16 20 C -0.01 -0.53 4.04 29.85 0.12 -0.41 16 21 C -0.53 -29.66 9.66 25.60 0.25 -29.42 16 22 H 0.03 1.75 7.99 -2.91 -0.02 1.73 16 23 C 0.00 -0.17 5.47 84.66 0.46 0.29 16 24 N -0.96 -59.61 13.96 21.45 0.30 -59.31 16 25 Si 0.95 42.31 27.47 68.60 1.88 44.20 16 26 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 27 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 28 H -0.24 -9.14 6.54 99.48 0.65 -8.49 16 29 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.09 0.71 8.11 -2.39 -0.02 0.70 16 31 H 0.09 1.04 4.72 -2.39 -0.01 1.03 16 32 H 0.12 1.98 7.38 -2.39 -0.02 1.96 16 33 H 0.09 2.13 6.56 -2.39 -0.02 2.12 16 34 H 0.15 2.29 5.93 -2.91 -0.02 2.28 16 35 H 0.17 1.06 8.06 -2.91 -0.02 1.03 16 36 H 0.18 0.39 8.06 -2.91 -0.02 0.37 16 37 H 0.17 1.78 7.62 -2.91 -0.02 1.76 16 38 H 0.35 8.86 8.58 -89.70 -0.77 8.09 16 39 H 0.35 7.48 9.06 -89.69 -0.81 6.66 16 40 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.09 1.75 6.24 -2.39 -0.01 1.74 16 42 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.05 1.93 7.75 -2.38 -0.02 1.92 16 44 H 0.03 1.08 7.20 -2.39 -0.02 1.06 16 45 H 0.01 0.52 7.57 -2.39 -0.02 0.50 16 46 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -76.48 379.45 3.36 -73.11 By element: Atomic # 1 Polarization: 22.83 SS G_CDS: -0.61 Total: 22.22 kcal Atomic # 6 Polarization: -25.63 SS G_CDS: 4.32 Total: -21.31 kcal Atomic # 7 Polarization: -89.26 SS G_CDS: -2.82 Total: -92.08 kcal Atomic # 8 Polarization: -26.73 SS G_CDS: 0.59 Total: -26.14 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 1.88 Total: 44.20 kcal Total: -76.48 3.36 -73.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594427992.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.824 kcal (2) G-P(sol) polarization free energy of solvation -76.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds