Wall clock time and date at job start Tue Mar 31 2020 19:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35756 * 117.00396 * 2 1 4 4 C 1.38725 * 119.58689 * 179.97438 * 3 2 1 5 5 C 1.38569 * 119.29132 * 180.02562 * 4 3 2 6 6 C 1.39032 * 118.48864 * 0.02562 * 5 4 3 7 7 N 1.40390 * 120.44033 * 179.97438 * 6 5 4 8 8 C 1.34777 * 120.00088 * 20.78090 * 7 6 5 9 9 O 1.21598 * 119.99915 * 356.48797 * 8 7 6 10 10 N 1.34773 * 120.00273 * 176.49083 * 8 7 6 11 11 C 1.46932 * 120.62768 * 4.73311 * 10 8 7 12 12 C 1.52768 * 109.00593 * 233.58299 * 11 10 8 13 13 C 1.53032 * 109.38362 * 305.58788 * 12 11 10 14 14 C 1.53047 * 109.53998 * 61.23952 * 13 12 11 15 15 H 1.08997 * 109.49461 * 58.58491 * 14 13 12 16 16 C 1.50694 * 109.49723 * 178.68340 * 14 13 12 17 17 H 1.08000 * 120.00585 * 359.84093 * 16 14 13 18 18 C 1.37886 * 119.99930 * 179.83837 * 16 14 13 19 19 N 1.31513 * 119.99469 * 359.97438 * 18 16 14 20 20 Si 1.86794 * 120.00115 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47130 * 359.97438 * 20 18 16 22 22 H 1.48492 * 109.47431 * 120.00033 * 20 18 16 23 23 H 1.48506 * 109.47056 * 240.00127 * 20 18 16 24 24 C 1.46925 * 120.63606 * 185.01002 * 10 8 7 25 25 C 1.39304 * 119.11435 * 0.27212 * 6 5 4 26 26 O 1.35746 * 119.68425 * 179.70451 * 25 6 5 27 27 C 1.42904 * 117.00010 * 180.02562 * 26 25 6 28 28 N 1.32266 * 120.62622 * 359.43259 * 25 6 5 29 29 H 1.09006 * 109.46972 * 299.99976 * 1 2 3 30 30 H 1.09002 * 109.47294 * 59.99931 * 1 2 3 31 31 H 1.09003 * 109.47193 * 180.02562 * 1 2 3 32 32 H 1.07999 * 120.34887 * 0.02562 * 4 3 2 33 33 H 1.08003 * 120.75511 * 180.02562 * 5 4 3 34 34 H 0.96996 * 119.99696 * 201.04589 * 7 6 5 35 35 H 1.08998 * 109.58545 * 353.41665 * 11 10 8 36 36 H 1.08995 * 109.59016 * 113.84486 * 11 10 8 37 37 H 1.08994 * 109.56316 * 185.54986 * 12 11 10 38 38 H 1.09002 * 109.38430 * 65.51570 * 12 11 10 39 39 H 1.09006 * 109.46327 * 301.22037 * 13 12 11 40 40 H 1.08998 * 109.46165 * 181.25965 * 13 12 11 41 41 H 0.97003 * 119.99429 * 179.97438 * 19 18 16 42 42 H 1.08990 * 109.58778 * 246.15901 * 24 10 8 43 43 H 1.09001 * 109.58218 * 6.43650 * 24 10 8 44 44 H 1.08994 * 109.47119 * 179.97438 * 27 26 25 45 45 H 1.08997 * 109.47088 * 300.00070 * 27 26 25 46 46 H 1.09000 * 109.46736 * 59.99695 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0453 1.2096 0.0000 4 6 3.4312 1.2721 0.0005 5 6 4.0540 2.5099 0.0011 6 6 3.2604 3.6515 0.0016 7 7 3.8483 4.9264 0.0027 8 6 5.1217 5.0817 -0.4109 9 8 5.7819 4.1098 -0.7243 10 7 5.6632 6.3140 -0.4770 11 6 4.9149 7.4869 -0.0045 12 6 4.8703 8.5308 -1.1190 13 6 6.2956 8.8393 -1.5832 14 6 6.9405 7.5665 -2.1366 15 1 6.3420 7.1858 -2.9643 16 6 8.3322 7.8784 -2.6231 17 1 8.7178 8.8844 -2.5479 18 6 9.1135 6.8794 -3.1642 19 7 8.6441 5.6542 -3.2553 20 14 10.8389 7.2658 -3.7666 21 1 11.1266 8.7070 -3.5530 22 1 11.8216 6.4473 -3.0120 23 1 10.9400 6.9506 -5.2143 24 6 7.0107 6.5111 -1.0285 25 6 1.8743 3.5135 0.0073 26 8 1.0885 4.6203 0.0140 27 6 -0.3253 4.4122 0.0202 28 7 1.3165 2.3142 0.0010 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 4.0183 0.3656 0.0005 33 1 5.1313 2.5861 0.0011 34 1 3.3394 5.6949 0.3047 35 1 3.8992 7.1909 0.2578 36 1 5.4115 7.9098 0.8687 37 1 4.4036 9.4426 -0.7466 38 1 4.2912 8.1415 -1.9564 39 1 6.8809 9.2057 -0.7398 40 1 6.2668 9.6004 -2.3629 41 1 9.1936 4.9515 -3.6363 42 1 7.6817 6.8527 -0.2405 43 1 7.3784 5.5708 -1.4393 44 1 -0.8344 5.3760 0.0257 45 1 -0.6142 3.8533 -0.8698 46 1 -0.6056 3.8486 0.9101 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596705607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:26 Heat of formation + Delta-G solvation = -47.964560 kcal Electronic energy + Delta-G solvation = -29624.628415 eV Core-core repulsion = 25516.094782 eV Total energy + Delta-G solvation = -4108.533633 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.16484 -39.86585 -38.90368 -37.48863 -36.64378 -34.57197 -33.37844 -32.07927 -31.53330 -29.94289 -29.30019 -27.96445 -26.54931 -25.11181 -24.64949 -23.13572 -22.81179 -21.87128 -20.21009 -19.23078 -18.79022 -18.16530 -17.56800 -16.99037 -16.45799 -16.18446 -15.80557 -15.62211 -15.13139 -14.94188 -14.82085 -14.43148 -13.86018 -13.81232 -13.65974 -13.40253 -13.24364 -13.01112 -12.73651 -12.56557 -12.30451 -12.15585 -11.98135 -11.80669 -11.73507 -11.04148 -11.01765 -10.90895 -10.52038 -10.43380 -10.34354 -10.24800 -10.15498 -9.92411 -9.46507 -9.17675 -9.11256 -8.95268 -8.44705 -7.90964 -7.40907 -6.00385 -4.09063 1.20807 1.33898 2.84737 2.91785 3.14505 3.30603 3.38879 3.41555 3.52193 3.91982 4.13714 4.26775 4.43350 4.88951 5.06863 5.07782 5.11735 5.14458 5.15791 5.24668 5.29973 5.35548 5.41534 5.45072 5.53873 5.58384 5.80288 5.94057 6.05266 6.11896 6.28039 6.42915 6.53266 6.61660 6.74065 6.77284 6.83696 6.94803 6.99509 7.26226 7.34533 7.37900 7.68520 7.70593 7.88198 8.02238 8.37644 8.39204 8.93975 9.02534 9.56690 11.04857 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016958 B = 0.002989 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.752018 B = 9365.553069 C =10627.867502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.307 6.307 3 C 0.321 3.679 4 C -0.197 4.197 5 C -0.038 4.038 6 C 0.088 3.912 7 N -0.677 5.677 8 C 0.701 3.299 9 O -0.569 6.569 10 N -0.614 5.614 11 C 0.112 3.888 12 C -0.134 4.134 13 C -0.110 4.110 14 C 0.039 3.961 15 H 0.029 0.971 16 C -0.520 4.520 17 H 0.059 0.941 18 C 0.063 3.937 19 N -0.879 5.879 20 Si 0.892 3.108 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.284 1.284 24 C 0.128 3.872 25 C 0.318 3.682 26 O -0.309 6.309 27 C 0.045 3.955 28 N -0.573 5.573 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.093 0.907 32 H 0.146 0.854 33 H 0.190 0.810 34 H 0.407 0.593 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.050 0.950 40 H 0.052 0.948 41 H 0.263 0.737 42 H 0.043 0.957 43 H 0.125 0.875 44 H 0.095 0.905 45 H 0.057 0.943 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.967 -4.233 9.505 20.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.214 6.214 3 C 0.143 3.857 4 C -0.218 4.218 5 C -0.065 4.065 6 C -0.012 4.012 7 N -0.327 5.327 8 C 0.404 3.596 9 O -0.447 6.447 10 N -0.349 5.349 11 C -0.012 4.012 12 C -0.172 4.172 13 C -0.148 4.148 14 C 0.019 3.981 15 H 0.047 0.953 16 C -0.559 4.559 17 H 0.077 0.923 18 C -0.140 4.140 19 N -0.516 5.516 20 Si 0.720 3.280 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.210 1.210 24 C 0.008 3.992 25 C 0.137 3.863 26 O -0.216 6.216 27 C -0.050 4.050 28 N -0.311 5.311 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.111 0.889 32 H 0.163 0.837 33 H 0.206 0.794 34 H 0.246 0.754 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.061 0.939 43 H 0.142 0.858 44 H 0.113 0.887 45 H 0.075 0.925 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -18.099 -5.082 9.189 20.925 hybrid contribution 0.784 0.648 -0.258 1.049 sum -17.315 -4.434 8.932 19.981 Atomic orbital electron populations 1.22782 0.77844 1.02638 1.02072 1.86267 1.22385 1.24378 1.88410 1.19325 0.89133 0.83064 0.94150 1.20978 0.91090 0.99579 1.10172 1.22255 1.03582 0.88297 0.92341 1.17457 0.88049 0.86694 1.08952 1.42692 1.13743 1.07735 1.68497 1.15911 0.80575 0.84627 0.78509 1.90752 1.60897 1.37276 1.55750 1.47853 1.19523 1.03272 1.64286 1.21492 0.94900 0.87478 0.97316 1.21876 0.99711 0.97472 0.98176 1.21622 0.93131 1.00238 0.99806 1.19000 0.96053 0.89716 0.93287 0.95293 1.21098 0.98785 0.95356 1.40663 0.92283 1.25060 0.98363 0.95146 0.95478 1.69893 1.36764 1.00685 1.44290 0.86537 0.84610 0.78371 0.78489 1.19823 1.20948 1.21045 1.22286 0.76820 1.05144 0.94975 1.18864 0.86759 0.84402 0.96310 1.86196 1.19460 1.27515 1.88445 1.22794 0.77471 1.02621 1.02158 1.66668 1.40802 0.97912 1.25745 0.92668 0.92598 0.88868 0.83662 0.79359 0.75443 0.92070 0.91655 0.92101 0.92102 0.93093 0.92953 0.92675 0.93875 0.85763 0.88678 0.92470 0.92576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 10.38 101.05 1.05 1.42 16 2 O -0.31 -3.82 10.48 -18.98 -0.20 -4.01 16 3 C 0.32 4.50 7.48 -17.15 -0.13 4.37 16 4 C -0.20 -2.79 10.03 -39.28 -0.39 -3.18 16 5 C -0.04 -0.61 8.96 -39.16 -0.35 -0.96 16 6 C 0.09 1.41 6.55 -83.24 -0.55 0.86 16 7 N -0.68 -10.92 5.25 -13.97 -0.07 -10.99 16 8 C 0.70 13.98 8.21 -86.92 -0.71 13.27 16 9 O -0.57 -13.21 12.56 5.28 0.07 -13.14 16 10 N -0.61 -12.00 2.98 -178.76 -0.53 -12.53 16 11 C 0.11 1.68 6.41 -3.93 -0.03 1.66 16 12 C -0.13 -2.08 6.06 -26.83 -0.16 -2.25 16 13 C -0.11 -2.13 5.11 -26.69 -0.14 -2.26 16 14 C 0.04 0.93 2.25 -91.65 -0.21 0.73 16 15 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 16 C -0.52 -13.84 8.56 -34.44 -0.29 -14.14 16 17 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 18 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 19 N -0.88 -25.25 11.39 55.43 0.63 -24.62 16 20 Si 0.89 21.04 29.54 -169.99 -5.02 16.01 16 21 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 C 0.13 3.01 5.39 -3.71 -0.02 2.99 16 25 C 0.32 4.62 7.50 -16.97 -0.13 4.49 16 26 O -0.31 -3.90 9.85 -18.95 -0.19 -4.09 16 27 C 0.04 0.40 10.38 101.05 1.05 1.45 16 28 N -0.57 -7.98 8.06 -13.26 -0.11 -8.08 16 29 H 0.05 0.47 8.10 -51.93 -0.42 0.05 16 30 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 31 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.15 1.76 8.06 -52.49 -0.42 1.34 16 33 H 0.19 3.39 5.31 -52.50 -0.28 3.11 16 34 H 0.41 5.55 5.73 -40.82 -0.23 5.32 16 35 H 0.06 0.74 5.56 -51.93 -0.29 0.45 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 42 H 0.04 1.01 8.14 -51.93 -0.42 0.58 16 43 H 0.12 3.43 5.15 -51.93 -0.27 3.16 16 44 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 46 H 0.06 0.48 8.11 -51.93 -0.42 0.06 16 LS Contribution 371.57 15.07 5.60 5.60 Total: -1.00 -31.32 371.57 -7.45 -38.77 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -6.52 Total: 7.02 kcal Atomic # 6 Polarization: 11.17 SS G_CDS: -1.10 Total: 10.07 kcal Atomic # 7 Polarization: -56.14 SS G_CDS: -0.08 Total: -56.23 kcal Atomic # 8 Polarization: -20.93 SS G_CDS: -0.32 Total: -21.25 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.32 -7.45 -38.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596705607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.195 kcal (2) G-P(sol) polarization free energy of solvation -31.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds