Wall clock time and date at job start Tue Mar 31 2020 19:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35756 * 117.00396 * 2 1 4 4 C 1.38725 * 119.58689 * 179.97438 * 3 2 1 5 5 C 1.38569 * 119.29132 * 180.02562 * 4 3 2 6 6 C 1.39032 * 118.48864 * 0.02562 * 5 4 3 7 7 N 1.40390 * 120.44033 * 179.97438 * 6 5 4 8 8 C 1.34777 * 120.00088 * 20.78090 * 7 6 5 9 9 O 1.21598 * 119.99915 * 356.48797 * 8 7 6 10 10 N 1.34773 * 120.00273 * 176.49083 * 8 7 6 11 11 C 1.46932 * 120.62768 * 4.73311 * 10 8 7 12 12 C 1.52768 * 109.00593 * 233.58299 * 11 10 8 13 13 C 1.53032 * 109.38362 * 305.58788 * 12 11 10 14 14 C 1.53047 * 109.53998 * 61.23952 * 13 12 11 15 15 H 1.08997 * 109.49461 * 58.58491 * 14 13 12 16 16 C 1.50694 * 109.49723 * 178.68340 * 14 13 12 17 17 H 1.08000 * 120.00585 * 359.84093 * 16 14 13 18 18 C 1.37886 * 119.99930 * 179.83837 * 16 14 13 19 19 N 1.31513 * 119.99469 * 359.97438 * 18 16 14 20 20 Si 1.86794 * 120.00115 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47130 * 359.97438 * 20 18 16 22 22 H 1.48492 * 109.47431 * 120.00033 * 20 18 16 23 23 H 1.48506 * 109.47056 * 240.00127 * 20 18 16 24 24 C 1.46925 * 120.63606 * 185.01002 * 10 8 7 25 25 C 1.39304 * 119.11435 * 0.27212 * 6 5 4 26 26 O 1.35746 * 119.68425 * 179.70451 * 25 6 5 27 27 C 1.42904 * 117.00010 * 180.02562 * 26 25 6 28 28 N 1.32266 * 120.62622 * 359.43259 * 25 6 5 29 29 H 1.09006 * 109.46972 * 299.99976 * 1 2 3 30 30 H 1.09002 * 109.47294 * 59.99931 * 1 2 3 31 31 H 1.09003 * 109.47193 * 180.02562 * 1 2 3 32 32 H 1.07999 * 120.34887 * 0.02562 * 4 3 2 33 33 H 1.08003 * 120.75511 * 180.02562 * 5 4 3 34 34 H 0.96996 * 119.99696 * 201.04589 * 7 6 5 35 35 H 1.08998 * 109.58545 * 353.41665 * 11 10 8 36 36 H 1.08995 * 109.59016 * 113.84486 * 11 10 8 37 37 H 1.08994 * 109.56316 * 185.54986 * 12 11 10 38 38 H 1.09002 * 109.38430 * 65.51570 * 12 11 10 39 39 H 1.09006 * 109.46327 * 301.22037 * 13 12 11 40 40 H 1.08998 * 109.46165 * 181.25965 * 13 12 11 41 41 H 0.97003 * 119.99429 * 179.97438 * 19 18 16 42 42 H 1.08990 * 109.58778 * 246.15901 * 24 10 8 43 43 H 1.09001 * 109.58218 * 6.43650 * 24 10 8 44 44 H 1.08994 * 109.47119 * 179.97438 * 27 26 25 45 45 H 1.08997 * 109.47088 * 300.00070 * 27 26 25 46 46 H 1.09000 * 109.46736 * 59.99695 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0453 1.2096 0.0000 4 6 3.4312 1.2721 0.0005 5 6 4.0540 2.5099 0.0011 6 6 3.2604 3.6515 0.0016 7 7 3.8483 4.9264 0.0027 8 6 5.1217 5.0817 -0.4109 9 8 5.7819 4.1098 -0.7243 10 7 5.6632 6.3140 -0.4770 11 6 4.9149 7.4869 -0.0045 12 6 4.8703 8.5308 -1.1190 13 6 6.2956 8.8393 -1.5832 14 6 6.9405 7.5665 -2.1366 15 1 6.3420 7.1858 -2.9643 16 6 8.3322 7.8784 -2.6231 17 1 8.7178 8.8844 -2.5479 18 6 9.1135 6.8794 -3.1642 19 7 8.6441 5.6542 -3.2553 20 14 10.8389 7.2658 -3.7666 21 1 11.1266 8.7070 -3.5530 22 1 11.8216 6.4473 -3.0120 23 1 10.9400 6.9506 -5.2143 24 6 7.0107 6.5111 -1.0285 25 6 1.8743 3.5135 0.0073 26 8 1.0885 4.6203 0.0140 27 6 -0.3253 4.4122 0.0202 28 7 1.3165 2.3142 0.0010 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 4.0183 0.3656 0.0005 33 1 5.1313 2.5861 0.0011 34 1 3.3394 5.6949 0.3047 35 1 3.8992 7.1909 0.2578 36 1 5.4115 7.9098 0.8687 37 1 4.4036 9.4426 -0.7466 38 1 4.2912 8.1415 -1.9564 39 1 6.8809 9.2057 -0.7398 40 1 6.2668 9.6004 -2.3629 41 1 9.1936 4.9515 -3.6363 42 1 7.6817 6.8527 -0.2405 43 1 7.3784 5.5708 -1.4393 44 1 -0.8344 5.3760 0.0257 45 1 -0.6142 3.8533 -0.8698 46 1 -0.6056 3.8486 0.9101 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596705607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:25 Heat of formation + Delta-G solvation = -70.851756 kcal Electronic energy + Delta-G solvation = -29625.620879 eV Core-core repulsion = 25516.094782 eV Total energy + Delta-G solvation = -4109.526097 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.35601 -41.24632 -39.89699 -38.85356 -37.88393 -36.00892 -35.18310 -33.61784 -32.77831 -31.58684 -30.50606 -28.77298 -27.49261 -26.97128 -26.12270 -24.23623 -24.06468 -23.43709 -21.77129 -20.57757 -19.97512 -19.51102 -18.65092 -18.56347 -17.97305 -17.45757 -16.92942 -16.66268 -16.54543 -16.34307 -16.14893 -15.94497 -15.25386 -15.23808 -14.75763 -14.69256 -14.52686 -14.32848 -14.18064 -14.02904 -13.84624 -13.52389 -12.90416 -12.89729 -12.68583 -12.63322 -12.57565 -12.28349 -12.20320 -12.09994 -11.83785 -11.62821 -11.44646 -11.35224 -11.03275 -10.90941 -10.72102 -10.50502 -10.41696 -9.48254 -8.62547 -8.08468 -6.24916 0.06525 0.15214 1.40550 1.43648 1.51218 1.55121 1.89325 2.06652 2.16444 2.43717 2.69690 2.83413 3.19750 3.21583 3.78153 3.97452 4.05748 4.16145 4.26550 4.30773 4.43433 4.44978 4.46491 4.50262 4.60968 4.64601 4.73569 4.77602 4.78026 4.81396 4.84692 4.91403 5.12080 5.19416 5.26319 5.28588 5.34514 5.53244 5.58783 5.64149 5.80600 5.87025 5.95528 6.10629 6.30813 6.36882 6.57936 6.87402 6.95412 7.44547 7.50557 8.94964 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016958 B = 0.002989 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.752018 B = 9365.553069 C =10627.867502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.312 6.312 3 C 0.324 3.676 4 C -0.201 4.201 5 C -0.049 4.049 6 C 0.061 3.939 7 N -0.658 5.658 8 C 0.696 3.304 9 O -0.612 6.612 10 N -0.618 5.618 11 C 0.106 3.894 12 C -0.126 4.126 13 C -0.105 4.105 14 C 0.037 3.963 15 H -0.014 1.014 16 C -0.533 4.533 17 H 0.062 0.938 18 C 0.010 3.990 19 N -0.913 5.913 20 Si 0.956 3.044 21 H -0.261 1.261 22 H -0.283 1.283 23 H -0.285 1.285 24 C 0.144 3.856 25 C 0.327 3.673 26 O -0.312 6.312 27 C 0.038 3.962 28 N -0.568 5.568 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.124 0.876 32 H 0.161 0.839 33 H 0.166 0.834 34 H 0.420 0.580 35 H 0.096 0.904 36 H 0.086 0.914 37 H 0.106 0.894 38 H 0.048 0.952 39 H 0.060 0.940 40 H 0.052 0.948 41 H 0.259 0.741 42 H 0.039 0.961 43 H 0.079 0.921 44 H 0.126 0.874 45 H 0.055 0.945 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.325 -3.019 10.732 23.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.220 6.220 3 C 0.146 3.854 4 C -0.223 4.223 5 C -0.076 4.076 6 C -0.038 4.038 7 N -0.309 5.309 8 C 0.398 3.602 9 O -0.492 6.492 10 N -0.353 5.353 11 C -0.016 4.016 12 C -0.164 4.164 13 C -0.143 4.143 14 C 0.018 3.982 15 H 0.004 0.996 16 C -0.572 4.572 17 H 0.081 0.919 18 C -0.189 4.189 19 N -0.552 5.552 20 Si 0.782 3.218 21 H -0.185 1.185 22 H -0.209 1.209 23 H -0.211 1.211 24 C 0.021 3.979 25 C 0.146 3.854 26 O -0.219 6.219 27 C -0.056 4.056 28 N -0.307 5.307 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.142 0.858 32 H 0.178 0.822 33 H 0.182 0.818 34 H 0.261 0.739 35 H 0.114 0.886 36 H 0.105 0.895 37 H 0.124 0.876 38 H 0.067 0.933 39 H 0.078 0.922 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.058 0.942 43 H 0.097 0.903 44 H 0.144 0.856 45 H 0.073 0.927 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -20.529 -3.834 10.444 23.350 hybrid contribution 1.353 0.203 -0.633 1.507 sum -19.176 -3.631 9.811 21.844 Atomic orbital electron populations 1.23089 0.75751 1.04805 1.02270 1.86275 1.24453 1.23319 1.87907 1.19453 0.89195 0.83725 0.92994 1.21077 0.91723 0.99392 1.10074 1.22050 1.02680 0.89567 0.93293 1.17579 0.88965 0.86321 1.10929 1.42329 1.12252 1.08489 1.67826 1.16076 0.81509 0.84186 0.78447 1.90744 1.62282 1.38747 1.57461 1.47727 1.18647 1.04752 1.64209 1.21851 0.96401 0.85664 0.97658 1.21832 0.97036 0.99488 0.98011 1.21513 0.95463 0.97378 0.99940 1.18932 0.94778 0.92220 0.92285 0.99614 1.21526 1.00046 0.95361 1.40231 0.91941 1.25876 1.02232 0.94949 0.95871 1.70088 1.38085 1.01609 1.45392 0.85532 0.79980 0.78660 0.77642 1.18483 1.20857 1.21074 1.21671 0.79012 1.02615 0.94588 1.18843 0.86424 0.85119 0.95060 1.86199 1.21193 1.26613 1.87935 1.23111 0.75449 1.04689 1.02367 1.66772 1.40391 0.97675 1.25820 0.92152 0.92639 0.85832 0.82170 0.81751 0.73912 0.88613 0.89538 0.87561 0.93285 0.92165 0.92970 0.93169 0.94218 0.90267 0.85561 0.92666 0.91919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.54 10.38 113.37 1.18 1.72 16 2 O -0.31 -7.24 10.48 -90.82 -0.95 -8.19 16 3 C 0.32 8.77 7.48 84.73 0.63 9.41 16 4 C -0.20 -5.76 10.03 22.47 0.23 -5.53 16 5 C -0.05 -1.64 8.96 22.54 0.20 -1.44 16 6 C 0.06 1.95 6.55 38.22 0.25 2.20 16 7 N -0.66 -21.09 5.25 -316.35 -1.66 -22.75 16 8 C 0.70 28.58 8.21 179.06 1.47 30.05 16 9 O -0.61 -30.28 12.56 -4.02 -0.05 -30.33 16 10 N -0.62 -24.43 2.98 -837.73 -2.50 -26.93 16 11 C 0.11 2.93 6.41 86.22 0.55 3.48 16 12 C -0.13 -3.57 6.06 30.53 0.19 -3.39 16 13 C -0.11 -3.95 5.11 30.62 0.16 -3.79 16 14 C 0.04 1.85 2.25 -11.46 -0.03 1.82 16 15 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 16 C -0.53 -29.02 8.56 25.60 0.22 -28.80 16 17 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 18 C 0.01 0.57 5.30 84.66 0.45 1.02 16 19 N -0.91 -55.14 11.39 21.45 0.24 -54.90 16 20 Si 0.96 44.11 29.54 68.60 2.03 46.14 16 21 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 22 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 23 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 24 C 0.14 7.04 5.39 86.36 0.47 7.51 16 25 C 0.33 9.12 7.50 84.88 0.64 9.76 16 26 O -0.31 -7.17 9.85 -90.71 -0.89 -8.07 16 27 C 0.04 0.57 10.38 113.37 1.18 1.75 16 28 N -0.57 -14.98 8.06 -421.47 -3.40 -18.37 16 29 H 0.06 0.88 8.10 -2.38 -0.02 0.86 16 30 H 0.05 0.87 8.10 -2.39 -0.02 0.85 16 31 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.16 3.92 8.06 -2.91 -0.02 3.90 16 33 H 0.17 6.40 5.31 -3.08 -0.02 6.39 16 34 H 0.42 10.70 5.73 -92.71 -0.53 10.17 16 35 H 0.10 1.99 5.56 -2.39 -0.01 1.97 16 36 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.06 2.14 8.14 -2.38 -0.02 2.12 16 40 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 42 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 43 H 0.08 4.67 5.15 -2.39 -0.01 4.65 16 44 H 0.13 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.05 0.87 8.10 -2.39 -0.02 0.85 16 46 H 0.06 0.88 8.11 -2.39 -0.02 0.86 16 Total: -1.00 -72.85 371.57 1.08 -71.77 By element: Atomic # 1 Polarization: 25.37 SS G_CDS: 0.48 Total: 25.85 kcal Atomic # 6 Polarization: 18.00 SS G_CDS: 7.77 Total: 25.77 kcal Atomic # 7 Polarization: -115.64 SS G_CDS: -7.31 Total: -122.94 kcal Atomic # 8 Polarization: -44.69 SS G_CDS: -1.90 Total: -46.59 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -72.85 1.08 -71.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596705607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.920 kcal (2) G-P(sol) polarization free energy of solvation -72.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds