Wall clock time and date at job start Tue Mar 31 2020 18:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35672 * 117.00492 * 2 1 4 4 C 1.38916 * 119.68447 * 180.02562 * 3 2 1 5 5 C 1.38381 * 119.11109 * 179.97438 * 4 3 2 6 6 C 1.38830 * 118.48325 * 359.97438 * 5 4 3 7 7 C 1.50703 * 120.35201 * 179.97438 * 6 5 4 8 8 O 1.42905 * 109.46904 * 90.00420 * 7 6 5 9 9 C 1.42896 * 113.99956 * 179.97438 * 8 7 6 10 10 C 1.50696 * 109.47042 * 179.97438 * 9 8 7 11 11 O 1.21282 * 120.00323 * 359.97438 * 10 9 8 12 12 N 1.34783 * 120.00050 * 180.02562 * 10 9 8 13 13 C 1.46967 * 120.59522 * 180.02562 * 12 10 9 14 14 C 1.53374 * 108.63231 * 235.25231 * 13 12 10 15 15 N 1.46972 * 108.63217 * 310.57203 * 14 13 12 16 16 C 1.36935 * 120.59045 * 235.20705 * 15 14 13 17 17 H 1.08002 * 119.99725 * 151.84492 * 16 15 14 18 18 C 1.38804 * 120.00405 * 331.57419 * 16 15 14 19 19 N 1.31622 * 119.99787 * 342.82520 * 18 16 15 20 20 Si 1.86800 * 120.00346 * 162.82771 * 18 16 15 21 21 H 1.48493 * 109.47374 * 89.99790 * 20 18 16 22 22 H 1.48496 * 109.47349 * 210.00137 * 20 18 16 23 23 H 1.48504 * 109.47003 * 329.99893 * 20 18 16 24 24 C 1.46962 * 118.81330 * 55.48066 * 15 14 13 25 25 C 1.46958 * 120.59366 * 0.02562 * 12 10 9 26 26 C 1.38040 * 119.29145 * 0.25753 * 6 5 4 27 27 N 1.31961 * 120.83272 * 359.44638 * 26 6 5 28 28 H 1.09004 * 109.46710 * 59.99776 * 1 2 3 29 29 H 1.08997 * 109.47546 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46877 * 300.00773 * 1 2 3 31 31 H 1.08000 * 120.44476 * 0.02562 * 4 3 2 32 32 H 1.08007 * 120.75972 * 180.02562 * 5 4 3 33 33 H 1.09000 * 109.47700 * 330.00698 * 7 6 5 34 34 H 1.09004 * 109.47159 * 209.99948 * 7 6 5 35 35 H 1.09000 * 109.46948 * 59.99947 * 9 8 7 36 36 H 1.09000 * 109.47581 * 299.99844 * 9 8 7 37 37 H 1.08996 * 109.60899 * 115.50126 * 13 12 10 38 38 H 1.09001 * 109.60456 * 354.99104 * 13 12 10 39 39 H 1.09002 * 109.60640 * 190.83592 * 14 13 12 40 40 H 1.08999 * 109.75615 * 70.39807 * 14 13 12 41 41 H 0.96999 * 119.99847 * 179.97438 * 19 18 16 42 42 H 1.08998 * 109.60973 * 64.26416 * 24 15 14 43 43 H 1.08995 * 109.61395 * 184.77560 * 24 15 14 44 44 H 1.09002 * 109.60988 * 244.49705 * 25 12 10 45 45 H 1.09006 * 109.61277 * 4.83592 * 25 12 10 46 46 H 1.08001 * 119.58328 * 179.72698 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 3.4326 1.2737 -0.0005 5 6 4.0486 2.5129 -0.0011 6 6 3.2506 3.6489 -0.0016 7 6 3.8771 5.0196 -0.0016 8 8 4.0755 5.4526 -1.3489 9 6 4.6672 6.7484 -1.4618 10 6 4.8298 7.1012 -2.9179 11 8 4.4744 6.3198 -3.7746 12 7 5.3710 8.2849 -3.2681 13 6 5.5352 8.6426 -4.6841 14 6 7.0078 8.9913 -4.9339 15 7 7.4448 9.9471 -3.9065 16 6 7.9955 11.1493 -4.2624 17 1 7.9002 12.0021 -3.6067 18 6 8.6811 11.2703 -5.4632 19 7 9.0974 10.1932 -6.0948 20 14 9.0131 12.9619 -6.1829 21 1 10.3132 13.4692 -5.6755 22 1 9.0621 12.8688 -7.6641 23 1 7.9278 13.8925 -5.7810 24 6 7.2857 9.5871 -2.4906 25 6 5.8076 9.2409 -2.2409 26 6 1.8773 3.5096 0.0038 27 7 1.3188 2.3140 -0.0014 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 4.0228 0.3693 -0.0014 32 1 5.1256 2.5944 -0.0019 33 1 4.8374 4.9803 0.5125 34 1 3.2185 5.7201 0.5118 35 1 5.6438 6.7453 -0.9778 36 1 4.0247 7.4846 -0.9788 37 1 4.9103 9.5043 -4.9185 38 1 5.2479 7.7980 -5.3104 39 1 7.1148 9.4409 -5.9210 40 1 7.6153 8.0882 -4.8753 41 1 9.5762 10.2778 -6.9342 42 1 7.9105 8.7242 -2.2601 43 1 7.5764 10.4301 -1.8639 44 1 5.2020 10.1451 -2.3017 45 1 5.6974 8.7926 -1.2534 46 1 1.2520 4.3902 0.0079 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599538191.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:37 Heat of formation + Delta-G solvation = -39.621210 kcal Electronic energy + Delta-G solvation = -28049.628310 eV Core-core repulsion = 23941.456471 eV Total energy + Delta-G solvation = -4108.171839 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.94848 -39.74185 -38.53729 -37.53934 -36.58623 -33.94110 -33.04784 -31.90972 -31.22591 -30.63416 -28.46123 -27.71526 -26.62011 -25.63905 -23.77896 -23.64584 -22.74325 -22.23089 -20.65546 -18.73750 -18.72368 -17.53504 -17.47128 -16.68134 -16.39141 -16.27424 -16.09396 -15.59124 -15.08439 -14.82400 -14.80416 -14.72400 -14.31077 -13.74652 -13.68904 -13.62431 -13.47066 -13.32575 -13.26303 -12.76153 -12.52156 -12.19841 -12.01399 -11.84412 -11.67790 -11.42409 -11.25636 -10.84960 -10.77282 -10.61332 -10.29229 -10.20492 -10.02522 -9.99778 -9.88512 -9.81491 -9.33834 -8.77216 -8.62608 -8.28108 -6.75178 -5.88069 -3.33784 0.78520 0.94264 2.76030 2.90689 2.95756 3.32132 3.39888 3.41390 3.46992 3.95888 4.03504 4.40972 4.51140 4.54771 4.65751 4.76685 4.87135 4.97414 4.99222 5.00663 5.08761 5.12545 5.17897 5.22071 5.29645 5.30326 5.43768 5.59597 5.66183 5.69966 5.81399 5.95748 6.08791 6.09214 6.28713 6.34038 6.45285 6.62980 6.76701 6.88599 6.93765 7.22972 7.51726 7.52203 7.69184 7.84443 8.32816 8.53634 9.08437 9.71253 10.27780 11.19356 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.036856 B = 0.001804 C = 0.001786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.528718 B =15518.887699 C =15676.422895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.309 6.309 3 C 0.322 3.678 4 C -0.192 4.192 5 C -0.017 4.017 6 C -0.177 4.177 7 C 0.110 3.890 8 O -0.358 6.358 9 C 0.047 3.953 10 C 0.509 3.491 11 O -0.534 6.534 12 N -0.597 5.597 13 C 0.089 3.911 14 C 0.158 3.842 15 N -0.591 5.591 16 C -0.259 4.259 17 H 0.068 0.932 18 C 0.004 3.996 19 N -0.900 5.900 20 Si 0.904 3.096 21 H -0.286 1.286 22 H -0.289 1.289 23 H -0.279 1.279 24 C 0.130 3.870 25 C 0.087 3.913 26 C 0.164 3.836 27 N -0.543 5.543 28 H 0.060 0.940 29 H 0.096 0.904 30 H 0.059 0.941 31 H 0.144 0.856 32 H 0.145 0.855 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.061 0.939 38 H 0.081 0.919 39 H 0.100 0.900 40 H 0.024 0.976 41 H 0.256 0.744 42 H 0.024 0.976 43 H 0.068 0.932 44 H 0.069 0.931 45 H 0.069 0.931 46 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.349 -13.567 16.447 25.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.216 6.216 3 C 0.144 3.856 4 C -0.213 4.213 5 C -0.043 4.043 6 C -0.179 4.179 7 C 0.033 3.967 8 O -0.276 6.276 9 C -0.033 4.033 10 C 0.296 3.704 11 O -0.411 6.411 12 N -0.331 5.331 13 C -0.034 4.034 14 C 0.031 3.969 15 N -0.314 5.314 16 C -0.389 4.389 17 H 0.085 0.915 18 C -0.195 4.195 19 N -0.544 5.544 20 Si 0.734 3.266 21 H -0.213 1.213 22 H -0.215 1.215 23 H -0.204 1.204 24 C 0.003 3.997 25 C -0.038 4.038 26 C 0.008 3.992 27 N -0.266 5.266 28 H 0.078 0.922 29 H 0.114 0.886 30 H 0.077 0.923 31 H 0.161 0.839 32 H 0.162 0.838 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.080 0.920 38 H 0.099 0.901 39 H 0.118 0.882 40 H 0.042 0.958 41 H 0.066 0.934 42 H 0.042 0.958 43 H 0.086 0.914 44 H 0.087 0.913 45 H 0.088 0.912 46 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -14.299 -14.461 15.652 25.662 hybrid contribution 1.032 1.246 -0.165 1.627 sum -13.266 -13.214 15.487 24.299 Atomic orbital electron populations 1.22870 0.77117 1.02960 1.02586 1.86235 1.23048 1.24598 1.87696 1.19906 0.89495 0.84726 0.91508 1.21065 0.91985 0.99589 1.08636 1.21372 1.00777 0.90619 0.91499 1.20391 0.94819 0.95326 1.07379 1.21165 0.99383 0.91620 0.84543 1.88106 1.82237 1.32330 1.24945 1.22275 0.99028 0.86217 0.95803 1.20088 0.78417 0.81828 0.90115 1.90689 1.49796 1.48940 1.51702 1.48019 1.60044 1.16378 1.08662 1.22518 1.01215 0.99841 0.79812 1.21205 0.87669 0.92528 0.95451 1.44008 1.70731 1.17796 0.98822 1.19166 1.28342 0.86778 1.04592 0.91466 1.25095 0.97239 0.97077 1.00059 1.70021 1.39393 1.27141 1.17811 0.86279 0.78150 0.83835 0.78372 1.21329 1.21473 1.20399 1.21369 0.91370 0.98421 0.88550 1.22506 0.99297 0.92451 0.89498 1.22314 0.92102 0.93673 0.91126 1.67354 1.40780 0.98734 1.19706 0.92160 0.88608 0.92272 0.83866 0.83771 0.91929 0.91938 0.90223 0.90429 0.92036 0.90060 0.88186 0.95786 0.93393 0.95831 0.91389 0.91311 0.91224 0.82191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.38 101.05 1.05 1.34 16 2 O -0.31 -3.19 10.48 -18.72 -0.20 -3.39 16 3 C 0.32 3.59 7.49 -17.12 -0.13 3.46 16 4 C -0.19 -1.86 10.04 -39.28 -0.39 -2.26 16 5 C -0.02 -0.16 9.85 -39.31 -0.39 -0.55 16 6 C -0.18 -1.76 5.53 -104.47 -0.58 -2.34 16 7 C 0.11 1.00 6.09 36.01 0.22 1.22 16 8 O -0.36 -4.88 9.86 -55.14 -0.54 -5.43 16 9 C 0.05 0.58 4.76 36.00 0.17 0.75 16 10 C 0.51 8.96 7.77 -10.98 -0.09 8.87 16 11 O -0.53 -11.63 15.90 -14.35 -0.23 -11.86 16 12 N -0.60 -10.57 2.95 -172.19 -0.51 -11.08 16 13 C 0.09 1.78 6.59 -3.59 -0.02 1.76 16 14 C 0.16 3.71 5.51 -3.59 -0.02 3.69 16 15 N -0.59 -14.04 2.96 -171.74 -0.51 -14.55 16 16 C -0.26 -6.75 9.57 -15.06 -0.14 -6.90 16 17 H 0.07 1.70 7.89 -52.49 -0.41 1.28 16 18 C 0.00 0.12 4.91 -17.43 -0.09 0.03 16 19 N -0.90 -25.44 11.20 55.49 0.62 -24.82 16 20 Si 0.90 20.91 29.59 -169.99 -5.03 15.88 16 21 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 23 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 24 C 0.13 2.45 6.70 -3.35 -0.02 2.43 16 25 C 0.09 1.32 6.52 -3.35 -0.02 1.30 16 26 C 0.16 1.68 10.85 -17.57 -0.19 1.49 16 27 N -0.54 -6.20 9.22 -13.33 -0.12 -6.32 16 28 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 29 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.42 8.10 -51.93 -0.42 0.00 16 31 H 0.14 1.10 8.06 -52.49 -0.42 0.67 16 32 H 0.14 1.04 8.06 -52.48 -0.42 0.62 16 33 H 0.06 0.45 8.09 -51.93 -0.42 0.03 16 34 H 0.06 0.43 8.09 -51.93 -0.42 0.01 16 35 H 0.08 0.83 7.72 -51.93 -0.40 0.43 16 36 H 0.08 0.75 7.91 -51.93 -0.41 0.34 16 37 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 38 H 0.08 1.66 6.99 -51.93 -0.36 1.29 16 39 H 0.10 2.60 6.00 -51.93 -0.31 2.29 16 40 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.07 1.19 7.93 -51.93 -0.41 0.78 16 44 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.07 0.77 5.91 -51.93 -0.31 0.46 16 46 H 0.16 1.28 8.06 -52.49 -0.42 0.86 16 LS Contribution 381.98 15.07 5.76 5.76 Total: -1.00 -34.36 381.98 -8.22 -42.58 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -6.82 Total: -1.08 kcal Atomic # 6 Polarization: 14.94 SS G_CDS: -0.64 Total: 14.30 kcal Atomic # 7 Polarization: -56.25 SS G_CDS: -0.52 Total: -56.77 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: -0.97 Total: -20.68 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.03 Total: 15.88 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.36 -8.22 -42.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599538191.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.959 kcal (2) G-P(sol) polarization free energy of solvation -34.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds