Wall clock time and date at job start Tue Mar 31 2020 18:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35672 * 117.00492 * 2 1 4 4 C 1.38916 * 119.68447 * 180.02562 * 3 2 1 5 5 C 1.38381 * 119.11109 * 179.97438 * 4 3 2 6 6 C 1.38830 * 118.48325 * 359.97438 * 5 4 3 7 7 C 1.50703 * 120.35201 * 179.97438 * 6 5 4 8 8 O 1.42905 * 109.46904 * 90.00420 * 7 6 5 9 9 C 1.42896 * 113.99956 * 179.97438 * 8 7 6 10 10 C 1.50696 * 109.47042 * 179.97438 * 9 8 7 11 11 O 1.21282 * 120.00323 * 359.97438 * 10 9 8 12 12 N 1.34783 * 120.00050 * 180.02562 * 10 9 8 13 13 C 1.46967 * 120.59522 * 180.02562 * 12 10 9 14 14 C 1.53374 * 108.63231 * 235.25231 * 13 12 10 15 15 N 1.46972 * 108.63217 * 310.57203 * 14 13 12 16 16 C 1.36935 * 120.59045 * 235.20705 * 15 14 13 17 17 H 1.08002 * 119.99725 * 151.84492 * 16 15 14 18 18 C 1.38804 * 120.00405 * 331.57419 * 16 15 14 19 19 N 1.31622 * 119.99787 * 342.82520 * 18 16 15 20 20 Si 1.86800 * 120.00346 * 162.82771 * 18 16 15 21 21 H 1.48493 * 109.47374 * 89.99790 * 20 18 16 22 22 H 1.48496 * 109.47349 * 210.00137 * 20 18 16 23 23 H 1.48504 * 109.47003 * 329.99893 * 20 18 16 24 24 C 1.46962 * 118.81330 * 55.48066 * 15 14 13 25 25 C 1.46958 * 120.59366 * 0.02562 * 12 10 9 26 26 C 1.38040 * 119.29145 * 0.25753 * 6 5 4 27 27 N 1.31961 * 120.83272 * 359.44638 * 26 6 5 28 28 H 1.09004 * 109.46710 * 59.99776 * 1 2 3 29 29 H 1.08997 * 109.47546 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46877 * 300.00773 * 1 2 3 31 31 H 1.08000 * 120.44476 * 0.02562 * 4 3 2 32 32 H 1.08007 * 120.75972 * 180.02562 * 5 4 3 33 33 H 1.09000 * 109.47700 * 330.00698 * 7 6 5 34 34 H 1.09004 * 109.47159 * 209.99948 * 7 6 5 35 35 H 1.09000 * 109.46948 * 59.99947 * 9 8 7 36 36 H 1.09000 * 109.47581 * 299.99844 * 9 8 7 37 37 H 1.08996 * 109.60899 * 115.50126 * 13 12 10 38 38 H 1.09001 * 109.60456 * 354.99104 * 13 12 10 39 39 H 1.09002 * 109.60640 * 190.83592 * 14 13 12 40 40 H 1.08999 * 109.75615 * 70.39807 * 14 13 12 41 41 H 0.96999 * 119.99847 * 179.97438 * 19 18 16 42 42 H 1.08998 * 109.60973 * 64.26416 * 24 15 14 43 43 H 1.08995 * 109.61395 * 184.77560 * 24 15 14 44 44 H 1.09002 * 109.60988 * 244.49705 * 25 12 10 45 45 H 1.09006 * 109.61277 * 4.83592 * 25 12 10 46 46 H 1.08001 * 119.58328 * 179.72698 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 3.4326 1.2737 -0.0005 5 6 4.0486 2.5129 -0.0011 6 6 3.2506 3.6489 -0.0016 7 6 3.8771 5.0196 -0.0016 8 8 4.0755 5.4526 -1.3489 9 6 4.6672 6.7484 -1.4618 10 6 4.8298 7.1012 -2.9179 11 8 4.4744 6.3198 -3.7746 12 7 5.3710 8.2849 -3.2681 13 6 5.5352 8.6426 -4.6841 14 6 7.0078 8.9913 -4.9339 15 7 7.4448 9.9471 -3.9065 16 6 7.9955 11.1493 -4.2624 17 1 7.9002 12.0021 -3.6067 18 6 8.6811 11.2703 -5.4632 19 7 9.0974 10.1932 -6.0948 20 14 9.0131 12.9619 -6.1829 21 1 10.3132 13.4692 -5.6755 22 1 9.0621 12.8688 -7.6641 23 1 7.9278 13.8925 -5.7810 24 6 7.2857 9.5871 -2.4906 25 6 5.8076 9.2409 -2.2409 26 6 1.8773 3.5096 0.0038 27 7 1.3188 2.3140 -0.0014 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 4.0228 0.3693 -0.0014 32 1 5.1256 2.5944 -0.0019 33 1 4.8374 4.9803 0.5125 34 1 3.2185 5.7201 0.5118 35 1 5.6438 6.7453 -0.9778 36 1 4.0247 7.4846 -0.9788 37 1 4.9103 9.5043 -4.9185 38 1 5.2479 7.7980 -5.3104 39 1 7.1148 9.4409 -5.9210 40 1 7.6153 8.0882 -4.8753 41 1 9.5762 10.2778 -6.9342 42 1 7.9105 8.7242 -2.2601 43 1 7.5764 10.4301 -1.8639 44 1 5.2020 10.1451 -2.3017 45 1 5.6974 8.7926 -1.2534 46 1 1.2520 4.3902 0.0079 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599538191.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:36 Heat of formation + Delta-G solvation = -63.730041 kcal Electronic energy + Delta-G solvation = -28050.673747 eV Core-core repulsion = 23941.456471 eV Total energy + Delta-G solvation = -4109.217276 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.66848 -41.07757 -39.33864 -38.62773 -37.95595 -35.64340 -33.79463 -33.07322 -32.67214 -32.12444 -29.58749 -28.59956 -27.99984 -26.47232 -25.34730 -24.47656 -24.29394 -22.94914 -22.23867 -20.22683 -19.43116 -18.86417 -18.22933 -18.02982 -17.60687 -17.09988 -17.01706 -16.82562 -16.52780 -16.18855 -15.77403 -15.52239 -15.46307 -15.25210 -15.12607 -14.96322 -14.74540 -14.36554 -14.11645 -14.00802 -13.51385 -13.36704 -13.14496 -12.99035 -12.82086 -12.63942 -12.46554 -12.39926 -12.29153 -12.11710 -12.00005 -11.85371 -11.66528 -10.94586 -10.79590 -10.71610 -10.59579 -10.56104 -9.82490 -9.50811 -8.64969 -7.87571 -5.36158 0.04306 0.22853 1.48379 1.51304 1.59769 1.61069 1.81151 2.10945 2.51384 2.60899 3.10985 3.27927 3.31318 3.57837 3.61749 3.90634 3.93461 3.99289 4.15571 4.21389 4.25998 4.32275 4.34571 4.40446 4.41212 4.43150 4.53719 4.55125 4.56194 4.68090 4.73314 4.78345 4.81477 4.88623 4.91213 5.08185 5.26952 5.27703 5.42696 5.45669 5.61869 5.67709 6.10567 6.18354 6.36506 6.52945 6.77660 7.10310 7.19731 7.80753 8.33692 9.17721 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.036856 B = 0.001804 C = 0.001786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.528718 B =15518.887699 C =15676.422895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.321 6.321 3 C 0.302 3.698 4 C -0.200 4.200 5 C -0.022 4.022 6 C -0.186 4.186 7 C 0.108 3.892 8 O -0.394 6.394 9 C 0.055 3.945 10 C 0.501 3.499 11 O -0.587 6.587 12 N -0.601 5.601 13 C 0.103 3.897 14 C 0.170 3.830 15 N -0.609 5.609 16 C -0.261 4.261 17 H 0.078 0.922 18 C -0.052 4.052 19 N -0.938 5.938 20 Si 0.968 3.032 21 H -0.285 1.285 22 H -0.298 1.298 23 H -0.267 1.267 24 C 0.123 3.877 25 C 0.096 3.904 26 C 0.151 3.849 27 N -0.561 5.561 28 H 0.051 0.949 29 H 0.123 0.877 30 H 0.059 0.941 31 H 0.159 0.841 32 H 0.165 0.835 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.109 0.891 36 H 0.118 0.882 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.068 0.932 40 H -0.009 1.009 41 H 0.250 0.750 42 H 0.018 0.982 43 H 0.083 0.917 44 H 0.079 0.921 45 H 0.124 0.876 46 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.110 -12.582 19.378 27.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.229 6.229 3 C 0.123 3.877 4 C -0.220 4.220 5 C -0.047 4.047 6 C -0.188 4.188 7 C 0.032 3.968 8 O -0.314 6.314 9 C -0.024 4.024 10 C 0.291 3.709 11 O -0.467 6.467 12 N -0.334 5.334 13 C -0.021 4.021 14 C 0.043 3.957 15 N -0.333 5.333 16 C -0.391 4.391 17 H 0.096 0.904 18 C -0.248 4.248 19 N -0.584 5.584 20 Si 0.796 3.204 21 H -0.212 1.212 22 H -0.225 1.225 23 H -0.191 1.191 24 C -0.003 4.003 25 C -0.027 4.027 26 C -0.005 4.005 27 N -0.285 5.285 28 H 0.070 0.930 29 H 0.141 0.859 30 H 0.078 0.922 31 H 0.176 0.824 32 H 0.183 0.817 33 H 0.104 0.896 34 H 0.108 0.892 35 H 0.127 0.873 36 H 0.136 0.864 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.009 0.991 41 H 0.059 0.941 42 H 0.036 0.964 43 H 0.102 0.898 44 H 0.098 0.902 45 H 0.142 0.858 46 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -15.077 -13.459 18.656 27.505 hybrid contribution 1.253 0.875 -1.012 1.833 sum -13.824 -12.584 17.644 25.705 Atomic orbital electron populations 1.23043 0.75910 1.04640 1.02163 1.86217 1.24360 1.24532 1.87747 1.20229 0.90268 0.84944 0.92221 1.21339 0.91732 1.00606 1.08325 1.21710 1.01892 0.90361 0.90725 1.20639 0.94806 0.96283 1.07076 1.21403 1.01181 0.91310 0.82858 1.88059 1.82649 1.32881 1.27796 1.22311 1.01501 0.87033 0.91562 1.21146 0.76822 0.80600 0.92351 1.90666 1.51872 1.50332 1.53818 1.48109 1.60132 1.17320 1.07876 1.22070 0.98407 0.99528 0.82093 1.20863 0.89494 0.90903 0.94424 1.44266 1.70790 1.17260 1.00952 1.19576 1.26951 0.88028 1.04519 0.90430 1.25862 0.97918 1.00130 1.00864 1.70185 1.41016 1.29175 1.18029 0.85270 0.78139 0.80130 0.76834 1.21157 1.22478 1.19116 1.21631 0.94127 0.98827 0.85745 1.22581 0.96140 0.92888 0.91057 1.22702 0.92869 0.93862 0.91028 1.67347 1.41455 0.99281 1.20381 0.92983 0.85916 0.92246 0.82367 0.81743 0.89607 0.89203 0.87341 0.86405 0.91423 0.91251 0.91403 0.99083 0.94142 0.96397 0.89822 0.90244 0.85786 0.80503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.54 10.38 113.37 1.18 1.71 16 2 O -0.32 -6.59 10.48 -89.90 -0.94 -7.53 16 3 C 0.30 6.65 7.49 84.79 0.63 7.28 16 4 C -0.20 -3.70 10.04 22.47 0.23 -3.48 16 5 C -0.02 -0.37 9.85 22.45 0.22 -0.15 16 6 C -0.19 -3.31 5.53 -19.77 -0.11 -3.42 16 7 C 0.11 1.55 6.09 71.24 0.43 1.98 16 8 O -0.39 -9.48 9.86 -129.94 -1.28 -10.76 16 9 C 0.05 1.12 4.76 71.23 0.34 1.46 16 10 C 0.50 16.58 7.77 87.65 0.68 17.26 16 11 O -0.59 -25.49 15.90 16.00 0.25 -25.23 16 12 N -0.60 -20.06 2.95 -817.07 -2.41 -22.47 16 13 C 0.10 4.17 6.59 86.42 0.57 4.74 16 14 C 0.17 8.25 5.51 86.41 0.48 8.73 16 15 N -0.61 -28.73 2.96 -697.26 -2.06 -30.79 16 16 C -0.26 -13.45 9.57 84.03 0.80 -12.65 16 17 H 0.08 3.77 7.89 -2.91 -0.02 3.75 16 18 C -0.05 -2.83 4.91 84.86 0.42 -2.42 16 19 N -0.94 -54.83 11.20 21.65 0.24 -54.59 16 20 Si 0.97 43.35 29.59 68.60 2.03 45.38 16 21 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 22 H -0.30 -13.67 7.11 99.48 0.71 -12.96 16 23 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 24 C 0.12 4.31 6.70 86.58 0.58 4.89 16 25 C 0.10 2.51 6.52 86.58 0.56 3.08 16 26 C 0.15 2.89 10.85 84.63 0.92 3.81 16 27 N -0.56 -12.60 9.22 -308.96 -2.85 -15.44 16 28 H 0.05 0.82 8.10 -2.38 -0.02 0.80 16 29 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.06 0.84 8.10 -2.39 -0.02 0.82 16 31 H 0.16 2.27 8.06 -2.91 -0.02 2.25 16 32 H 0.17 1.97 8.06 -2.91 -0.02 1.95 16 33 H 0.09 0.83 8.09 -2.39 -0.02 0.81 16 34 H 0.09 0.79 8.09 -2.39 -0.02 0.77 16 35 H 0.11 1.62 7.72 -2.39 -0.02 1.61 16 36 H 0.12 1.50 7.91 -2.39 -0.02 1.48 16 37 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 38 H 0.07 2.94 6.99 -2.39 -0.02 2.92 16 39 H 0.07 3.71 6.00 -2.39 -0.01 3.70 16 40 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 41 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 42 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.08 2.66 7.93 -2.39 -0.02 2.64 16 44 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 45 H 0.12 1.93 5.91 -2.38 -0.01 1.92 16 46 H 0.18 2.53 8.06 -2.91 -0.02 2.51 16 Total: -1.00 -78.80 381.98 1.90 -76.90 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: 0.98 Total: 11.71 kcal Atomic # 6 Polarization: 24.90 SS G_CDS: 7.93 Total: 32.83 kcal Atomic # 7 Polarization: -116.22 SS G_CDS: -7.08 Total: -123.30 kcal Atomic # 8 Polarization: -41.56 SS G_CDS: -1.97 Total: -43.52 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Total: -78.80 1.90 -76.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599538191.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.172 kcal (2) G-P(sol) polarization free energy of solvation -78.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds