Wall clock time and date at job start Tue Mar 31 2020 18:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.39835 * 119.99721 * 2 1 4 4 C 1.38918 * 119.99964 * 180.02562 * 3 2 1 5 5 C 1.38025 * 120.00408 * 180.27428 * 4 3 2 6 6 C 1.38927 * 119.99507 * 359.47239 * 5 4 3 7 7 N 1.39898 * 119.99800 * 180.23325 * 6 5 4 8 8 C 1.34775 * 119.99783 * 144.89782 * 7 6 5 9 9 O 1.21392 * 120.00560 * 4.81499 * 8 7 6 10 10 C 1.49328 * 119.99939 * 184.82004 * 8 7 6 11 11 O 1.21364 * 119.99760 * 0.31022 * 10 8 7 12 12 N 1.34774 * 120.00072 * 180.31409 * 10 8 7 13 13 C 1.46495 * 120.00014 * 354.62527 * 12 10 8 14 14 C 1.50700 * 109.47295 * 83.67041 * 13 12 10 15 15 H 1.08001 * 119.99833 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00246 * 179.97438 * 14 13 12 17 17 N 1.31517 * 120.00072 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 120.00226 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47551 * 90.00153 * 18 16 14 20 20 H 1.48509 * 109.47177 * 210.00211 * 18 16 14 21 21 H 1.48501 * 109.47274 * 329.99918 * 18 16 14 22 22 C 1.46507 * 119.99760 * 174.62049 * 12 10 8 23 23 C 1.53002 * 109.46750 * 90.00427 * 22 12 10 24 24 O 1.42899 * 109.47348 * 64.99755 * 23 22 12 25 25 C 1.42900 * 114.00234 * 179.97438 * 24 23 22 26 26 C 1.38925 * 120.00020 * 0.54222 * 6 5 4 27 27 C 1.38026 * 119.99961 * 359.71150 * 26 6 5 28 28 H 1.08997 * 109.46845 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47043 * 299.99843 * 1 2 3 30 30 H 1.09000 * 109.47481 * 59.99548 * 1 2 3 31 31 H 0.96989 * 120.00018 * 180.02562 * 2 1 3 32 32 H 1.08001 * 119.99681 * 359.97438 * 4 3 2 33 33 H 1.08005 * 119.99779 * 179.69471 * 5 4 3 34 34 H 0.96992 * 120.00097 * 324.89207 * 7 6 5 35 35 H 1.09007 * 109.47102 * 203.66898 * 13 12 10 36 36 H 1.09003 * 109.47189 * 323.66912 * 13 12 10 37 37 H 0.96993 * 120.00194 * 179.97438 * 17 16 14 38 38 H 1.09004 * 109.46773 * 210.00094 * 22 12 10 39 39 H 1.09003 * 109.47220 * 330.00071 * 22 12 10 40 40 H 1.09001 * 109.46695 * 184.99914 * 23 22 12 41 41 H 1.09005 * 109.46768 * 304.99525 * 23 22 12 42 42 H 1.08994 * 109.47189 * 300.00470 * 25 24 23 43 43 H 1.09003 * 109.46663 * 60.00048 * 25 24 23 44 44 H 1.08996 * 109.47288 * 179.97438 * 25 24 23 45 45 H 1.07996 * 120.00131 * 179.68941 * 26 6 5 46 46 H 1.07993 * 120.00276 * 180.02562 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1642 1.2110 0.0000 4 6 3.5534 1.2111 -0.0005 5 6 4.2435 2.4064 0.0052 6 6 3.5489 3.6095 0.0004 7 7 4.2484 4.8211 0.0013 8 6 3.7610 5.8810 -0.6736 9 8 2.6738 5.8120 -1.2092 10 6 4.5585 7.1403 -0.7627 11 8 5.6479 7.2074 -0.2321 12 7 4.0684 8.2024 -1.4322 13 6 2.8090 8.0849 -2.1712 14 6 1.6520 8.2921 -1.2282 15 1 1.8363 8.4918 -0.1829 16 6 0.3580 8.2278 -1.6999 17 7 0.1335 7.9861 -2.9731 18 14 -1.0761 8.4853 -0.5311 19 1 -1.4272 9.9275 -0.4885 20 1 -2.2473 7.7046 -1.0050 21 1 -0.6943 8.0284 0.8292 22 6 4.7952 9.4744 -1.4208 23 6 5.7767 9.5114 -2.5939 24 8 5.0495 9.5025 -3.8240 25 6 5.8768 9.5358 -4.9887 26 6 2.1596 3.6095 0.0012 27 6 1.4695 2.4141 0.0008 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.9500 -0.8400 -0.0004 32 1 4.0934 0.2758 -0.0005 33 1 5.3236 2.4063 0.0097 34 1 5.0840 4.8983 0.4876 35 1 2.7770 8.8398 -2.9570 36 1 2.7408 7.0928 -2.6175 37 1 -0.7768 7.9405 -3.3049 38 1 4.0873 10.2981 -1.5132 39 1 5.3445 9.5707 -0.4842 40 1 6.3795 10.4177 -2.5348 41 1 6.4280 8.6384 -2.5504 42 1 6.4814 10.4426 -4.9791 43 1 6.5304 8.6635 -4.9951 44 1 5.2498 9.5261 -5.8802 45 1 1.6196 4.5447 0.0026 46 1 0.3896 2.4141 0.0011 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599879343.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:14 Heat of formation + Delta-G solvation = -57.039004 kcal Electronic energy + Delta-G solvation = -29450.544907 eV Core-core repulsion = 25341.617776 eV Total energy + Delta-G solvation = -4108.927131 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.39451 -39.21380 -37.97861 -37.24465 -35.86896 -34.96469 -33.28957 -32.44500 -30.72976 -29.91161 -28.77630 -26.98792 -26.21569 -25.69661 -24.18919 -22.83136 -22.74837 -21.82440 -20.72741 -19.12848 -17.62654 -17.09049 -16.77901 -16.52558 -16.27258 -15.82916 -15.56690 -15.34084 -14.96997 -14.66317 -14.42945 -14.24572 -14.17529 -14.03177 -13.71363 -13.31690 -13.20799 -12.88157 -12.43450 -12.37424 -12.20331 -12.05717 -12.02005 -11.74068 -11.56014 -11.43392 -10.97188 -10.87679 -10.83353 -10.67969 -10.39273 -10.32021 -9.89792 -9.58523 -9.38938 -8.98200 -8.74888 -8.53172 -8.13214 -7.78240 -6.96261 -5.91411 -3.92722 1.62293 1.71305 2.31748 3.05837 3.35934 3.42256 3.45992 3.50794 3.90702 4.11366 4.21075 4.25025 4.54789 5.01218 5.08268 5.17098 5.19342 5.36268 5.40571 5.44956 5.47563 5.59750 5.61054 5.62936 5.64248 5.66514 5.71053 5.82335 5.85863 5.96174 6.19255 6.27832 6.30968 6.54057 6.71151 6.78323 6.84471 7.11658 7.43345 7.47313 7.53631 7.62471 7.74416 7.77001 7.98627 8.21640 8.32330 8.50352 8.79453 9.07338 9.68263 11.17493 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009704 B = 0.003986 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2884.617589 B = 7023.291929 C = 8924.296345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.758 5.758 3 C 0.191 3.809 4 C -0.180 4.180 5 C -0.100 4.100 6 C 0.099 3.901 7 N -0.660 5.660 8 C 0.486 3.514 9 O -0.432 6.432 10 C 0.506 3.494 11 O -0.567 6.567 12 N -0.552 5.552 13 C 0.233 3.767 14 C -0.512 4.512 15 H 0.052 0.948 16 C 0.070 3.930 17 N -0.889 5.889 18 Si 0.890 3.110 19 H -0.282 1.282 20 H -0.287 1.287 21 H -0.276 1.276 22 C 0.118 3.882 23 C 0.048 3.952 24 O -0.375 6.375 25 C 0.033 3.967 26 C -0.069 4.069 27 C -0.174 4.174 28 H 0.068 0.932 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.396 0.604 32 H 0.119 0.881 33 H 0.123 0.877 34 H 0.412 0.588 35 H 0.044 0.956 36 H 0.062 0.938 37 H 0.260 0.740 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.053 0.947 41 H 0.050 0.950 42 H 0.035 0.965 43 H 0.035 0.965 44 H 0.084 0.916 45 H 0.146 0.854 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.162 -10.035 3.337 13.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.390 5.390 3 C 0.089 3.911 4 C -0.203 4.203 5 C -0.121 4.121 6 C 0.004 3.996 7 N -0.309 5.309 8 C 0.268 3.732 9 O -0.299 6.299 10 C 0.289 3.711 11 O -0.450 6.450 12 N -0.281 5.281 13 C 0.115 3.885 14 C -0.551 4.551 15 H 0.070 0.930 16 C -0.132 4.132 17 N -0.528 5.528 18 Si 0.718 3.282 19 H -0.209 1.209 20 H -0.213 1.213 21 H -0.201 1.201 22 C -0.005 4.005 23 C -0.030 4.030 24 O -0.293 6.293 25 C -0.064 4.064 26 C -0.090 4.090 27 C -0.197 4.197 28 H 0.087 0.913 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.230 0.770 32 H 0.137 0.863 33 H 0.141 0.859 34 H 0.248 0.752 35 H 0.062 0.938 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.112 0.888 39 H 0.108 0.892 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.053 0.947 43 H 0.054 0.946 44 H 0.102 0.898 45 H 0.163 0.837 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 7.307 -9.922 2.991 12.680 hybrid contribution -0.051 -0.146 0.724 0.740 sum 7.256 -10.067 3.715 12.954 Atomic orbital electron populations 1.21487 0.80504 1.01821 1.01261 1.44342 1.05407 1.05108 1.84105 1.17827 0.91065 0.86206 0.96012 1.20240 0.91790 0.97659 1.10611 1.20603 0.99281 0.90632 1.01606 1.17535 0.91350 0.84738 1.05953 1.43107 1.26632 1.09318 1.51876 1.20313 0.87369 0.84814 0.80741 1.90986 1.18006 1.80546 1.40373 1.19864 0.85704 0.85230 0.80339 1.90631 1.21296 1.83781 1.49263 1.48236 1.24868 1.08424 1.46572 1.19952 0.76859 1.00197 0.91498 1.21224 0.90692 1.48358 0.94822 0.93025 1.24768 0.98350 0.95206 0.94914 1.69930 1.20556 1.49184 1.13108 0.86645 0.82395 0.77875 0.81311 1.20876 1.21261 1.20103 1.21523 0.95253 0.87138 0.96601 1.22985 0.94771 0.99990 0.85269 1.88069 1.32814 1.95164 1.13268 1.22685 0.95490 0.99141 0.89051 1.21263 0.92720 0.99093 0.95913 1.20564 0.99655 0.90557 1.08947 0.91306 0.93124 0.92950 0.77032 0.86315 0.85929 0.75193 0.93791 0.91993 0.93025 0.88849 0.89187 0.92922 0.93171 0.94670 0.94623 0.89780 0.83664 0.86016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.84 9.94 59.85 0.60 1.43 16 2 N -0.76 -7.87 5.90 -65.34 -0.39 -8.25 16 3 C 0.19 2.56 6.66 -83.70 -0.56 2.00 16 4 C -0.18 -2.26 9.89 -39.41 -0.39 -2.65 16 5 C -0.10 -1.37 9.96 -39.40 -0.39 -1.76 16 6 C 0.10 1.66 6.30 -83.67 -0.53 1.13 16 7 N -0.66 -11.40 5.32 -10.26 -0.05 -11.45 16 8 C 0.49 10.25 7.57 -11.64 -0.09 10.16 16 9 O -0.43 -10.52 9.57 5.46 0.05 -10.47 16 10 C 0.51 10.75 7.67 -11.64 -0.09 10.66 16 11 O -0.57 -11.73 16.12 5.48 0.09 -11.64 16 12 N -0.55 -12.03 2.44 -175.61 -0.43 -12.46 16 13 C 0.23 6.00 4.52 -5.20 -0.02 5.97 16 14 C -0.51 -14.15 7.79 -34.44 -0.27 -14.42 16 15 H 0.05 1.44 7.81 -52.49 -0.41 1.03 16 16 C 0.07 1.97 5.46 -17.82 -0.10 1.88 16 17 N -0.89 -26.30 13.29 55.43 0.74 -25.56 16 18 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 22 C 0.12 2.13 5.74 -4.04 -0.02 2.11 16 23 C 0.05 0.76 6.28 37.16 0.23 1.00 16 24 O -0.37 -6.72 9.65 -35.23 -0.34 -7.06 16 25 C 0.03 0.45 11.01 101.05 1.11 1.56 16 26 C -0.07 -1.25 8.69 -39.40 -0.34 -1.59 16 27 C -0.17 -2.72 9.31 -39.41 -0.37 -3.08 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.46 7.95 -51.93 -0.41 0.05 16 30 H 0.05 0.51 7.95 -51.93 -0.41 0.10 16 31 H 0.40 3.19 8.84 -40.82 -0.36 2.83 16 32 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 33 H 0.12 1.38 8.06 -52.48 -0.42 0.95 16 34 H 0.41 6.14 8.30 -40.82 -0.34 5.80 16 35 H 0.04 1.20 7.25 -51.93 -0.38 0.83 16 36 H 0.06 1.76 5.84 -51.93 -0.30 1.45 16 37 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 38 H 0.09 1.69 8.07 -51.93 -0.42 1.27 16 39 H 0.09 1.49 7.50 -51.93 -0.39 1.10 16 40 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.15 3.03 6.23 -52.49 -0.33 2.71 16 46 H 0.12 1.77 6.72 -52.49 -0.35 1.41 16 LS Contribution 385.66 15.07 5.81 5.81 Total: -1.00 -33.28 385.66 -7.38 -40.66 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: -6.62 Total: 9.15 kcal Atomic # 6 Polarization: 15.62 SS G_CDS: -1.22 Total: 14.40 kcal Atomic # 7 Polarization: -57.60 SS G_CDS: -0.13 Total: -57.73 kcal Atomic # 8 Polarization: -28.98 SS G_CDS: -0.20 Total: -29.18 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.28 -7.38 -40.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599879343.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.374 kcal (2) G-P(sol) polarization free energy of solvation -33.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds