Wall clock time and date at job start Tue Mar 31 2020 18:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.39835 * 119.99721 * 2 1 4 4 C 1.38918 * 119.99964 * 180.02562 * 3 2 1 5 5 C 1.38025 * 120.00408 * 180.27428 * 4 3 2 6 6 C 1.38927 * 119.99507 * 359.47239 * 5 4 3 7 7 N 1.39898 * 119.99800 * 180.23325 * 6 5 4 8 8 C 1.34775 * 119.99783 * 144.89782 * 7 6 5 9 9 O 1.21392 * 120.00560 * 4.81499 * 8 7 6 10 10 C 1.49328 * 119.99939 * 184.82004 * 8 7 6 11 11 O 1.21364 * 119.99760 * 0.31022 * 10 8 7 12 12 N 1.34774 * 120.00072 * 180.31409 * 10 8 7 13 13 C 1.46495 * 120.00014 * 354.62527 * 12 10 8 14 14 C 1.50700 * 109.47295 * 83.67041 * 13 12 10 15 15 H 1.08001 * 119.99833 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00246 * 179.97438 * 14 13 12 17 17 N 1.31517 * 120.00072 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 120.00226 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47551 * 90.00153 * 18 16 14 20 20 H 1.48509 * 109.47177 * 210.00211 * 18 16 14 21 21 H 1.48501 * 109.47274 * 329.99918 * 18 16 14 22 22 C 1.46507 * 119.99760 * 174.62049 * 12 10 8 23 23 C 1.53002 * 109.46750 * 90.00427 * 22 12 10 24 24 O 1.42899 * 109.47348 * 64.99755 * 23 22 12 25 25 C 1.42900 * 114.00234 * 179.97438 * 24 23 22 26 26 C 1.38925 * 120.00020 * 0.54222 * 6 5 4 27 27 C 1.38026 * 119.99961 * 359.71150 * 26 6 5 28 28 H 1.08997 * 109.46845 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47043 * 299.99843 * 1 2 3 30 30 H 1.09000 * 109.47481 * 59.99548 * 1 2 3 31 31 H 0.96989 * 120.00018 * 180.02562 * 2 1 3 32 32 H 1.08001 * 119.99681 * 359.97438 * 4 3 2 33 33 H 1.08005 * 119.99779 * 179.69471 * 5 4 3 34 34 H 0.96992 * 120.00097 * 324.89207 * 7 6 5 35 35 H 1.09007 * 109.47102 * 203.66898 * 13 12 10 36 36 H 1.09003 * 109.47189 * 323.66912 * 13 12 10 37 37 H 0.96993 * 120.00194 * 179.97438 * 17 16 14 38 38 H 1.09004 * 109.46773 * 210.00094 * 22 12 10 39 39 H 1.09003 * 109.47220 * 330.00071 * 22 12 10 40 40 H 1.09001 * 109.46695 * 184.99914 * 23 22 12 41 41 H 1.09005 * 109.46768 * 304.99525 * 23 22 12 42 42 H 1.08994 * 109.47189 * 300.00470 * 25 24 23 43 43 H 1.09003 * 109.46663 * 60.00048 * 25 24 23 44 44 H 1.08996 * 109.47288 * 179.97438 * 25 24 23 45 45 H 1.07996 * 120.00131 * 179.68941 * 26 6 5 46 46 H 1.07993 * 120.00276 * 180.02562 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1642 1.2110 0.0000 4 6 3.5534 1.2111 -0.0005 5 6 4.2435 2.4064 0.0052 6 6 3.5489 3.6095 0.0004 7 7 4.2484 4.8211 0.0013 8 6 3.7610 5.8810 -0.6736 9 8 2.6738 5.8120 -1.2092 10 6 4.5585 7.1403 -0.7627 11 8 5.6479 7.2074 -0.2321 12 7 4.0684 8.2024 -1.4322 13 6 2.8090 8.0849 -2.1712 14 6 1.6520 8.2921 -1.2282 15 1 1.8363 8.4918 -0.1829 16 6 0.3580 8.2278 -1.6999 17 7 0.1335 7.9861 -2.9731 18 14 -1.0761 8.4853 -0.5311 19 1 -1.4272 9.9275 -0.4885 20 1 -2.2473 7.7046 -1.0050 21 1 -0.6943 8.0284 0.8292 22 6 4.7952 9.4744 -1.4208 23 6 5.7767 9.5114 -2.5939 24 8 5.0495 9.5025 -3.8240 25 6 5.8768 9.5358 -4.9887 26 6 2.1596 3.6095 0.0012 27 6 1.4695 2.4141 0.0008 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.9500 -0.8400 -0.0004 32 1 4.0934 0.2758 -0.0005 33 1 5.3236 2.4063 0.0097 34 1 5.0840 4.8983 0.4876 35 1 2.7770 8.8398 -2.9570 36 1 2.7408 7.0928 -2.6175 37 1 -0.7768 7.9405 -3.3049 38 1 4.0873 10.2981 -1.5132 39 1 5.3445 9.5707 -0.4842 40 1 6.3795 10.4177 -2.5348 41 1 6.4280 8.6384 -2.5504 42 1 6.4814 10.4426 -4.9791 43 1 6.5304 8.6635 -4.9951 44 1 5.2498 9.5261 -5.8802 45 1 1.6196 4.5447 0.0026 46 1 0.3896 2.4141 0.0011 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599879343.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:13 Heat of formation + Delta-G solvation = -81.070243 kcal Electronic energy + Delta-G solvation = -29451.586980 eV Core-core repulsion = 25341.617776 eV Total energy + Delta-G solvation = -4109.969204 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.94552 -40.55166 -39.36428 -38.63946 -37.29575 -36.43285 -34.64487 -34.49107 -31.89143 -31.43402 -29.92646 -28.93158 -27.39191 -26.79303 -25.63668 -24.71525 -24.07458 -23.09071 -21.99698 -20.67711 -19.05509 -18.56043 -18.31023 -18.27565 -17.68310 -17.11995 -16.85242 -16.75472 -16.63156 -16.23772 -15.86669 -15.84127 -15.22429 -15.15523 -14.96515 -14.77964 -14.53724 -14.29353 -14.08430 -13.73722 -13.51218 -13.50119 -13.25980 -13.11343 -12.85058 -12.81365 -12.77339 -12.67671 -12.32461 -12.12379 -12.04019 -11.79746 -11.66332 -11.54027 -10.62826 -10.57155 -10.23615 -10.03757 -9.81400 -9.57833 -8.09757 -8.05214 -6.16899 0.29280 0.51916 0.82081 1.37769 1.39639 1.48518 1.55163 2.30628 2.43182 2.62473 2.73018 2.94205 2.97961 3.24771 3.52412 4.00791 4.10956 4.11841 4.19626 4.37658 4.40669 4.48456 4.51726 4.54594 4.58170 4.60135 4.65902 4.66813 4.85082 4.85812 4.94228 5.00568 5.02737 5.21053 5.36113 5.39657 5.48972 5.57053 5.67564 5.83159 5.94062 6.16068 6.22478 6.33330 6.40657 6.41254 6.85854 6.91568 6.95442 7.21025 7.47867 8.99658 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009704 B = 0.003986 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2884.617589 B = 7023.291929 C = 8924.296345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.747 5.747 3 C 0.198 3.802 4 C -0.173 4.173 5 C -0.086 4.086 6 C 0.068 3.932 7 N -0.640 5.640 8 C 0.481 3.519 9 O -0.475 6.475 10 C 0.505 3.495 11 O -0.560 6.560 12 N -0.559 5.559 13 C 0.261 3.739 14 C -0.514 4.514 15 H 0.044 0.956 16 C 0.020 3.980 17 N -0.923 5.923 18 Si 0.950 3.050 19 H -0.269 1.269 20 H -0.284 1.284 21 H -0.276 1.276 22 C 0.110 3.890 23 C 0.054 3.946 24 O -0.414 6.414 25 C 0.028 3.972 26 C -0.093 4.093 27 C -0.193 4.193 28 H 0.102 0.898 29 H 0.047 0.953 30 H 0.040 0.960 31 H 0.412 0.588 32 H 0.159 0.841 33 H 0.154 0.846 34 H 0.423 0.577 35 H 0.023 0.977 36 H 0.033 0.967 37 H 0.261 0.739 38 H 0.088 0.912 39 H 0.107 0.893 40 H 0.091 0.909 41 H 0.045 0.955 42 H 0.062 0.938 43 H 0.042 0.958 44 H 0.086 0.914 45 H 0.103 0.897 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.650 -11.825 4.345 15.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.378 5.378 3 C 0.094 3.906 4 C -0.195 4.195 5 C -0.107 4.107 6 C -0.027 4.027 7 N -0.289 5.289 8 C 0.262 3.738 9 O -0.346 6.346 10 C 0.287 3.713 11 O -0.442 6.442 12 N -0.289 5.289 13 C 0.141 3.859 14 C -0.553 4.553 15 H 0.062 0.938 16 C -0.178 4.178 17 N -0.563 5.563 18 Si 0.776 3.224 19 H -0.194 1.194 20 H -0.209 1.209 21 H -0.201 1.201 22 C -0.012 4.012 23 C -0.023 4.023 24 O -0.333 6.333 25 C -0.068 4.068 26 C -0.114 4.114 27 C -0.216 4.216 28 H 0.120 0.880 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.248 0.752 32 H 0.176 0.824 33 H 0.171 0.829 34 H 0.262 0.738 35 H 0.041 0.959 36 H 0.050 0.950 37 H 0.070 0.930 38 H 0.106 0.894 39 H 0.125 0.875 40 H 0.109 0.891 41 H 0.063 0.937 42 H 0.080 0.920 43 H 0.060 0.940 44 H 0.104 0.896 45 H 0.122 0.878 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 8.845 -11.751 4.035 15.251 hybrid contribution -0.462 0.251 0.432 0.680 sum 8.384 -11.500 4.467 14.916 Atomic orbital electron populations 1.21633 0.79612 1.03805 1.00569 1.44420 1.06124 1.04683 1.82604 1.17952 0.91806 0.86445 0.94399 1.20679 0.91425 0.98796 1.08628 1.20924 1.00776 0.89509 0.99451 1.17728 0.91010 0.85352 1.08609 1.42923 1.26634 1.08850 1.50530 1.20438 0.86983 0.85574 0.80805 1.90982 1.19698 1.81331 1.42618 1.19945 0.85833 0.85286 0.80195 1.90614 1.20816 1.83768 1.48979 1.48162 1.24153 1.10067 1.46483 1.19304 0.78225 0.97573 0.90813 1.21395 0.91662 1.47674 0.94572 0.93785 1.25521 1.00919 0.95055 0.96347 1.70048 1.21070 1.50409 1.14756 0.85693 0.79255 0.78359 0.79123 1.19420 1.20935 1.20136 1.21800 0.95505 0.85182 0.98670 1.22955 0.93909 1.01539 0.83939 1.88018 1.35001 1.95492 1.14814 1.22869 0.95532 1.00768 0.87621 1.21020 0.93661 0.98347 0.98324 1.20562 0.99820 0.90926 1.10314 0.87991 0.93447 0.94097 0.75192 0.82376 0.82863 0.73820 0.95899 0.94963 0.92993 0.89359 0.87452 0.89114 0.93706 0.91991 0.93975 0.89571 0.87844 0.86109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.40 9.94 127.77 1.27 2.67 16 2 N -0.75 -13.42 5.90 -360.63 -2.13 -15.55 16 3 C 0.20 4.95 6.66 38.19 0.25 5.20 16 4 C -0.17 -3.76 9.89 22.38 0.22 -3.54 16 5 C -0.09 -2.15 9.96 22.38 0.22 -1.93 16 6 C 0.07 2.27 6.30 38.18 0.24 2.51 16 7 N -0.64 -22.45 5.32 -304.72 -1.62 -24.08 16 8 C 0.48 21.15 7.57 87.23 0.66 21.81 16 9 O -0.48 -24.77 9.57 -3.38 -0.03 -24.80 16 10 C 0.50 21.90 7.67 87.23 0.67 22.57 16 11 O -0.56 -22.86 16.12 -3.29 -0.05 -22.92 16 12 N -0.56 -25.13 2.44 -827.85 -2.02 -27.15 16 13 C 0.26 14.12 4.52 85.63 0.39 14.50 16 14 C -0.51 -29.62 7.79 25.60 0.20 -29.42 16 15 H 0.04 2.54 7.81 -2.91 -0.02 2.52 16 16 C 0.02 1.20 5.46 84.65 0.46 1.66 16 17 N -0.92 -56.71 13.29 21.45 0.28 -56.43 16 18 Si 0.95 46.24 29.54 68.60 2.03 48.26 16 19 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 20 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 21 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 22 C 0.11 3.98 5.74 86.38 0.50 4.48 16 23 C 0.05 1.67 6.28 71.98 0.45 2.12 16 24 O -0.41 -14.89 9.65 -148.98 -1.44 -16.33 16 25 C 0.03 0.73 11.01 113.37 1.25 1.98 16 26 C -0.09 -3.52 8.69 22.38 0.19 -3.33 16 27 C -0.19 -6.15 9.31 22.38 0.21 -5.94 16 28 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.05 0.80 7.95 -2.39 -0.02 0.78 16 30 H 0.04 0.76 7.95 -2.39 -0.02 0.74 16 31 H 0.41 4.99 8.84 -92.72 -0.82 4.18 16 32 H 0.16 2.24 8.06 -2.91 -0.02 2.22 16 33 H 0.15 2.85 8.06 -2.91 -0.02 2.83 16 34 H 0.42 12.39 8.30 -92.71 -0.77 11.62 16 35 H 0.02 1.33 7.25 -2.38 -0.02 1.31 16 36 H 0.03 1.96 5.84 -2.39 -0.01 1.95 16 37 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 38 H 0.09 3.24 8.07 -2.39 -0.02 3.22 16 39 H 0.11 3.45 7.50 -2.39 -0.02 3.43 16 40 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 41 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 42 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 45 H 0.10 4.77 6.23 -2.91 -0.02 4.75 16 46 H 0.12 3.70 6.72 -2.91 -0.02 3.68 16 Total: -1.00 -76.00 385.66 1.64 -74.36 By element: Atomic # 1 Polarization: 29.84 SS G_CDS: -0.57 Total: 29.27 kcal Atomic # 6 Polarization: 28.16 SS G_CDS: 7.19 Total: 35.34 kcal Atomic # 7 Polarization: -117.71 SS G_CDS: -5.48 Total: -123.20 kcal Atomic # 8 Polarization: -62.53 SS G_CDS: -1.52 Total: -64.05 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.26 kcal Total: -76.00 1.64 -74.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599879343.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.709 kcal (2) G-P(sol) polarization free energy of solvation -76.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds