Wall clock time and date at job start Tue Mar 31 2020 18:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35903 * 117.00029 * 2 1 4 4 C 1.38755 * 120.05513 * 359.97438 * 3 2 1 5 5 C 1.38117 * 119.94118 * 180.02562 * 4 3 2 6 6 C 1.38289 * 120.05983 * 0.02562 * 5 4 3 7 7 C 1.50702 * 119.94343 * 180.02562 * 6 5 4 8 8 N 1.46897 * 109.47388 * 90.00026 * 7 6 5 9 9 C 1.46963 * 110.99570 * 293.79189 * 8 7 6 10 10 C 1.53051 * 109.36500 * 176.81486 * 9 8 7 11 11 N 1.46959 * 109.36354 * 58.39982 * 10 9 8 12 12 C 1.46897 * 110.99949 * 176.81181 * 11 10 9 13 13 C 1.50705 * 109.47267 * 293.80700 * 12 11 10 14 14 H 1.08000 * 119.99673 * 359.97438 * 13 12 11 15 15 C 1.37876 * 119.99948 * 180.02562 * 13 12 11 16 16 N 1.31507 * 119.99933 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99695 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47525 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47196 * 119.99815 * 17 15 13 20 20 H 1.48509 * 109.46773 * 239.99267 * 17 15 13 21 21 C 1.46952 * 110.88385 * 300.68338 * 11 10 9 22 22 C 1.46961 * 110.99939 * 170.00020 * 8 7 6 23 23 C 1.38243 * 120.11231 * 359.97438 * 6 5 4 24 24 C 1.38166 * 120.05257 * 0.02562 * 23 6 5 25 25 N 1.48001 * 120.02852 * 180.27124 * 24 23 6 26 26 O 1.21802 * 120.00177 * 359.72859 * 25 24 23 27 27 O 1.21801 * 120.00517 * 179.72788 * 25 24 23 28 28 H 1.08998 * 109.47053 * 60.00034 * 1 2 3 29 29 H 1.08999 * 109.47410 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47308 * 300.00268 * 1 2 3 31 31 H 1.07996 * 120.03032 * 0.04486 * 4 3 2 32 32 H 1.08000 * 119.97105 * 179.97438 * 5 4 3 33 33 H 1.09009 * 109.46497 * 209.99657 * 7 6 5 34 34 H 1.08990 * 109.47144 * 329.98836 * 7 6 5 35 35 H 1.09003 * 109.48928 * 296.78524 * 9 8 7 36 36 H 1.09005 * 109.48503 * 56.84761 * 9 8 7 37 37 H 1.09004 * 109.48858 * 298.44114 * 10 9 8 38 38 H 1.08998 * 109.50561 * 178.38123 * 10 9 8 39 39 H 1.09002 * 109.46777 * 53.80178 * 12 11 10 40 40 H 1.08998 * 109.47173 * 173.80468 * 12 11 10 41 41 H 0.97007 * 119.99737 * 180.02562 * 16 15 13 42 42 H 1.08998 * 109.48921 * 299.35262 * 21 11 10 43 43 H 1.08998 * 109.48991 * 179.28963 * 21 11 10 44 44 H 1.08998 * 109.48372 * 303.14817 * 22 8 7 45 45 H 1.09000 * 109.49174 * 63.21469 * 22 8 7 46 46 H 1.08001 * 119.97363 * 180.02562 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3753 -0.0005 5 6 1.9208 3.6047 -0.0011 6 6 3.3019 3.6758 -0.0016 7 6 3.9860 5.0186 -0.0016 8 7 4.2089 5.4546 1.3833 9 6 2.9333 5.7158 2.0649 10 6 3.2048 6.0897 3.5240 11 7 4.0751 7.2730 3.5699 12 6 4.2979 7.7091 4.9549 13 6 2.9996 8.1999 5.5420 14 1 2.0992 8.1893 4.9457 15 6 2.9616 8.6635 6.8399 16 7 4.0582 8.6768 7.5657 17 14 1.3525 9.2725 7.5674 18 1 0.2744 9.1545 6.5529 19 1 1.0055 8.4535 8.7566 20 1 1.4984 10.6942 7.9710 21 6 5.3506 7.0118 2.8884 22 6 5.0791 6.6379 1.4293 23 6 4.0560 2.5171 -0.0011 24 6 3.4311 1.2848 -0.0005 25 7 4.2389 0.0448 0.0061 26 8 5.4552 0.1102 0.0061 27 8 3.6876 -1.0413 0.0116 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 0.2128 2.3204 -0.0002 32 1 1.3340 4.5113 -0.0019 33 1 4.9438 4.9383 -0.5158 34 1 3.3579 5.7463 -0.5152 35 1 2.4175 6.5380 1.5686 36 1 2.3116 4.8212 2.0283 37 1 3.6962 5.2571 4.0273 38 1 2.2622 6.3120 4.0241 39 1 4.6693 6.8709 5.5444 40 1 5.0307 8.5159 4.9683 41 1 4.0313 9.0026 8.4791 42 1 5.8664 6.1897 3.3845 43 1 5.9723 7.9064 2.9250 44 1 6.0219 6.4155 0.9294 45 1 4.5878 7.4706 0.9259 46 1 5.1344 2.5752 -0.0011 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611173691.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:15 Heat of formation + Delta-G solvation = 4.341375 kcal Electronic energy + Delta-G solvation = -28946.277622 eV Core-core repulsion = 24840.012144 eV Total energy + Delta-G solvation = -4106.265478 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.25260 -40.69405 -39.23468 -38.01711 -36.45484 -35.24260 -32.78148 -32.35782 -31.41900 -30.51712 -28.61991 -27.81826 -26.64057 -25.90701 -23.93307 -23.32165 -22.72960 -21.72408 -21.33489 -19.38622 -19.28140 -18.69171 -18.15033 -17.59110 -16.77688 -16.37545 -16.30672 -16.02506 -15.38871 -15.17340 -14.83077 -14.64445 -14.34162 -14.15171 -13.94927 -13.57992 -13.54701 -13.11185 -12.77770 -12.36404 -12.15789 -12.08224 -11.94581 -11.73771 -11.62177 -11.53285 -11.21770 -11.09182 -11.07186 -10.93678 -10.83559 -10.69107 -10.47771 -10.36381 -9.97305 -9.78599 -9.22510 -8.94215 -8.49012 -8.30386 -7.30151 -6.07132 -4.08896 -0.26392 0.61283 1.20755 1.33954 2.49048 2.87858 3.26689 3.34202 3.37886 3.92374 3.98645 4.09970 4.32987 4.37650 4.50766 4.55262 4.61171 4.64040 4.86621 4.91138 5.01428 5.10499 5.16455 5.28326 5.29841 5.33822 5.43764 5.46065 5.63931 5.71982 5.76646 5.81656 5.92443 5.94809 6.09696 6.25057 6.36251 6.49769 6.58487 6.59424 7.03229 7.04799 7.27681 7.31457 7.66408 7.74614 8.03359 8.14404 8.49293 8.98596 9.55515 11.03795 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014447 B = 0.002558 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.714723 B =10945.145928 C =11700.181452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.284 6.284 3 C 0.192 3.808 4 C -0.213 4.213 5 C -0.019 4.019 6 C -0.107 4.107 7 C 0.096 3.904 8 N -0.536 5.536 9 C 0.055 3.945 10 C 0.068 3.932 11 N -0.538 5.538 12 C 0.193 3.807 13 C -0.508 4.508 14 H 0.063 0.937 15 C 0.055 3.945 16 N -0.897 5.897 17 Si 0.897 3.103 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.284 1.284 21 C 0.055 3.945 22 C 0.062 3.938 23 C 0.001 3.999 24 C -0.082 4.082 25 N 0.038 4.962 26 O -0.179 6.179 27 O -0.144 6.144 28 H 0.061 0.939 29 H 0.110 0.890 30 H 0.063 0.937 31 H 0.151 0.849 32 H 0.144 0.856 33 H 0.088 0.912 34 H 0.050 0.950 35 H 0.041 0.959 36 H 0.068 0.932 37 H 0.028 0.972 38 H 0.086 0.914 39 H -0.008 1.008 40 H 0.030 0.970 41 H 0.261 0.739 42 H 0.032 0.968 43 H 0.073 0.927 44 H 0.073 0.927 45 H 0.041 0.959 46 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.104 -12.661 -19.735 24.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.194 6.194 3 C 0.143 3.857 4 C -0.232 4.232 5 C -0.037 4.037 6 C -0.109 4.109 7 C -0.032 4.032 8 N -0.261 5.261 9 C -0.073 4.073 10 C -0.061 4.061 11 N -0.264 5.264 12 C 0.068 3.932 13 C -0.546 4.546 14 H 0.081 0.919 15 C -0.146 4.146 16 N -0.537 5.537 17 Si 0.725 3.275 18 H -0.197 1.197 19 H -0.211 1.211 20 H -0.210 1.210 21 C -0.074 4.074 22 C -0.065 4.065 23 C -0.019 4.019 24 C -0.166 4.166 25 N 0.556 4.444 26 O -0.388 6.388 27 O -0.364 6.364 28 H 0.080 0.920 29 H 0.129 0.871 30 H 0.082 0.918 31 H 0.169 0.831 32 H 0.162 0.838 33 H 0.106 0.894 34 H 0.068 0.932 35 H 0.059 0.941 36 H 0.086 0.914 37 H 0.046 0.954 38 H 0.105 0.895 39 H 0.010 0.990 40 H 0.048 0.952 41 H 0.071 0.929 42 H 0.050 0.950 43 H 0.092 0.908 44 H 0.091 0.909 45 H 0.060 0.940 46 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -6.305 -12.192 -19.547 23.885 hybrid contribution -0.864 0.176 0.649 1.094 sum -7.169 -12.017 -18.898 23.515 Atomic orbital electron populations 1.23305 0.77164 1.05198 1.01889 1.86408 1.22306 1.24484 1.86220 1.18674 0.89441 0.86437 0.91177 1.21277 1.00986 0.90877 1.10044 1.21385 0.94222 0.97898 0.90237 1.19698 0.93017 0.95024 1.03146 1.20975 1.00079 0.91084 0.91023 1.62215 1.15636 1.35063 1.13215 1.22342 0.89960 0.98992 0.96017 1.21973 0.99200 0.91718 0.93220 1.62298 1.12113 1.31419 1.20545 1.19708 0.97582 0.94812 0.81073 1.21171 0.94962 1.41546 0.96969 0.91932 1.24995 0.96552 0.95990 0.97094 1.69966 1.27103 1.47258 1.09340 0.86458 0.83586 0.78466 0.78986 1.19723 1.21085 1.20984 1.22071 0.93045 0.99498 0.92748 1.22182 0.96137 0.90232 0.97992 1.20799 1.02218 0.88175 0.90662 1.20494 0.88094 0.85834 1.22209 1.43311 1.01153 1.02379 0.97603 1.94539 0.95615 1.93936 1.54757 1.94569 1.74346 1.14874 1.52567 0.91998 0.87122 0.91807 0.83114 0.83800 0.89409 0.93200 0.94125 0.91360 0.95351 0.89549 0.99043 0.95170 0.92927 0.95024 0.90820 0.90893 0.94033 0.82271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.81 101.05 0.99 1.09 16 2 O -0.28 -2.84 8.51 -41.56 -0.35 -3.20 16 3 C 0.19 1.97 6.67 -39.21 -0.26 1.71 16 4 C -0.21 -1.62 9.04 -39.43 -0.36 -1.98 16 5 C -0.02 -0.15 7.91 -39.61 -0.31 -0.46 16 6 C -0.11 -1.00 4.89 -104.60 -0.51 -1.51 16 7 C 0.10 0.91 5.11 -4.98 -0.03 0.88 16 8 N -0.54 -6.96 4.70 -235.90 -1.11 -8.06 16 9 C 0.05 0.78 5.25 -3.76 -0.02 0.76 16 10 C 0.07 1.27 5.43 -3.77 -0.02 1.25 16 11 N -0.54 -11.27 4.70 -235.91 -1.11 -12.38 16 12 C 0.19 4.97 4.72 -4.97 -0.02 4.94 16 13 C -0.51 -13.98 8.47 -34.44 -0.29 -14.27 16 14 H 0.06 1.70 7.13 -52.49 -0.37 1.32 16 15 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 16 N -0.90 -26.45 13.29 55.43 0.74 -25.72 16 17 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 18 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 C 0.06 0.97 5.61 -3.77 -0.02 0.94 16 22 C 0.06 0.84 5.61 -3.76 -0.02 0.82 16 23 C 0.00 0.01 9.20 -39.61 -0.36 -0.35 16 24 C -0.08 -0.98 6.87 -79.81 -0.55 -1.53 16 25 N 0.04 0.55 4.45 34.03 0.15 0.70 16 26 O -0.18 -2.68 18.45 -29.46 -0.54 -3.23 16 27 O -0.14 -2.19 17.24 -36.49 -0.63 -2.82 16 28 H 0.06 0.21 7.66 -51.93 -0.40 -0.19 16 29 H 0.11 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.26 7.66 -51.93 -0.40 -0.13 16 31 H 0.15 0.71 6.30 -52.49 -0.33 0.38 16 32 H 0.14 0.86 7.99 -52.49 -0.42 0.44 16 33 H 0.09 0.72 7.97 -51.92 -0.41 0.31 16 34 H 0.05 0.42 8.06 -51.93 -0.42 0.00 16 35 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.85 5.95 -51.93 -0.31 0.55 16 37 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.09 1.74 6.79 -51.93 -0.35 1.39 16 39 H -0.01 -0.23 8.12 -51.93 -0.42 -0.65 16 40 H 0.03 0.83 8.03 -51.93 -0.42 0.41 16 41 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 42 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.07 1.26 8.07 -51.93 -0.42 0.84 16 44 H 0.07 0.82 8.07 -51.93 -0.42 0.40 16 45 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.16 1.60 7.61 -52.49 -0.40 1.20 16 LS Contribution 376.69 15.07 5.68 5.68 Total: -1.00 -32.93 376.69 -10.82 -43.76 By element: Atomic # 1 Polarization: 2.04 SS G_CDS: -6.74 Total: -4.70 kcal Atomic # 6 Polarization: -4.38 SS G_CDS: -1.88 Total: -6.26 kcal Atomic # 7 Polarization: -44.13 SS G_CDS: -1.33 Total: -45.46 kcal Atomic # 8 Polarization: -7.72 SS G_CDS: -1.53 Total: -9.24 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.93 -10.82 -43.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611173691.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.100 kcal (2) G-P(sol) polarization free energy of solvation -32.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds