Wall clock time and date at job start Tue Mar 31 2020 18:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35903 * 117.00029 * 2 1 4 4 C 1.38755 * 120.05513 * 359.97438 * 3 2 1 5 5 C 1.38117 * 119.94118 * 180.02562 * 4 3 2 6 6 C 1.38289 * 120.05983 * 0.02562 * 5 4 3 7 7 C 1.50702 * 119.94343 * 180.02562 * 6 5 4 8 8 N 1.46897 * 109.47388 * 90.00026 * 7 6 5 9 9 C 1.46963 * 110.99570 * 293.79189 * 8 7 6 10 10 C 1.53051 * 109.36500 * 176.81486 * 9 8 7 11 11 N 1.46959 * 109.36354 * 58.39982 * 10 9 8 12 12 C 1.46897 * 110.99949 * 176.81181 * 11 10 9 13 13 C 1.50705 * 109.47267 * 293.80700 * 12 11 10 14 14 H 1.08000 * 119.99673 * 359.97438 * 13 12 11 15 15 C 1.37876 * 119.99948 * 180.02562 * 13 12 11 16 16 N 1.31507 * 119.99933 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99695 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47525 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47196 * 119.99815 * 17 15 13 20 20 H 1.48509 * 109.46773 * 239.99267 * 17 15 13 21 21 C 1.46952 * 110.88385 * 300.68338 * 11 10 9 22 22 C 1.46961 * 110.99939 * 170.00020 * 8 7 6 23 23 C 1.38243 * 120.11231 * 359.97438 * 6 5 4 24 24 C 1.38166 * 120.05257 * 0.02562 * 23 6 5 25 25 N 1.48001 * 120.02852 * 180.27124 * 24 23 6 26 26 O 1.21802 * 120.00177 * 359.72859 * 25 24 23 27 27 O 1.21801 * 120.00517 * 179.72788 * 25 24 23 28 28 H 1.08998 * 109.47053 * 60.00034 * 1 2 3 29 29 H 1.08999 * 109.47410 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47308 * 300.00268 * 1 2 3 31 31 H 1.07996 * 120.03032 * 0.04486 * 4 3 2 32 32 H 1.08000 * 119.97105 * 179.97438 * 5 4 3 33 33 H 1.09009 * 109.46497 * 209.99657 * 7 6 5 34 34 H 1.08990 * 109.47144 * 329.98836 * 7 6 5 35 35 H 1.09003 * 109.48928 * 296.78524 * 9 8 7 36 36 H 1.09005 * 109.48503 * 56.84761 * 9 8 7 37 37 H 1.09004 * 109.48858 * 298.44114 * 10 9 8 38 38 H 1.08998 * 109.50561 * 178.38123 * 10 9 8 39 39 H 1.09002 * 109.46777 * 53.80178 * 12 11 10 40 40 H 1.08998 * 109.47173 * 173.80468 * 12 11 10 41 41 H 0.97007 * 119.99737 * 180.02562 * 16 15 13 42 42 H 1.08998 * 109.48921 * 299.35262 * 21 11 10 43 43 H 1.08998 * 109.48991 * 179.28963 * 21 11 10 44 44 H 1.08998 * 109.48372 * 303.14817 * 22 8 7 45 45 H 1.09000 * 109.49174 * 63.21469 * 22 8 7 46 46 H 1.08001 * 119.97363 * 180.02562 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3753 -0.0005 5 6 1.9208 3.6047 -0.0011 6 6 3.3019 3.6758 -0.0016 7 6 3.9860 5.0186 -0.0016 8 7 4.2089 5.4546 1.3833 9 6 2.9333 5.7158 2.0649 10 6 3.2048 6.0897 3.5240 11 7 4.0751 7.2730 3.5699 12 6 4.2979 7.7091 4.9549 13 6 2.9996 8.1999 5.5420 14 1 2.0992 8.1893 4.9457 15 6 2.9616 8.6635 6.8399 16 7 4.0582 8.6768 7.5657 17 14 1.3525 9.2725 7.5674 18 1 0.2744 9.1545 6.5529 19 1 1.0055 8.4535 8.7566 20 1 1.4984 10.6942 7.9710 21 6 5.3506 7.0118 2.8884 22 6 5.0791 6.6379 1.4293 23 6 4.0560 2.5171 -0.0011 24 6 3.4311 1.2848 -0.0005 25 7 4.2389 0.0448 0.0061 26 8 5.4552 0.1102 0.0061 27 8 3.6876 -1.0413 0.0116 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 0.2128 2.3204 -0.0002 32 1 1.3340 4.5113 -0.0019 33 1 4.9438 4.9383 -0.5158 34 1 3.3579 5.7463 -0.5152 35 1 2.4175 6.5380 1.5686 36 1 2.3116 4.8212 2.0283 37 1 3.6962 5.2571 4.0273 38 1 2.2622 6.3120 4.0241 39 1 4.6693 6.8709 5.5444 40 1 5.0307 8.5159 4.9683 41 1 4.0313 9.0026 8.4791 42 1 5.8664 6.1897 3.3845 43 1 5.9723 7.9064 2.9250 44 1 6.0219 6.4155 0.9294 45 1 4.5878 7.4706 0.9259 46 1 5.1344 2.5752 -0.0011 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611173691.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:14 Heat of formation + Delta-G solvation = -17.506369 kcal Electronic energy + Delta-G solvation = -28947.225011 eV Core-core repulsion = 24840.012144 eV Total energy + Delta-G solvation = -4107.212867 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.22748 -41.44941 -40.27937 -38.96118 -37.52405 -36.61106 -34.64330 -33.22913 -32.36273 -31.79641 -29.90510 -28.63430 -27.67543 -27.18557 -25.25404 -24.49518 -23.59382 -23.26983 -22.37398 -20.63537 -20.18258 -19.71657 -18.86107 -18.60013 -18.49862 -17.47542 -17.32134 -16.86801 -16.44892 -16.25718 -15.93118 -15.81793 -15.58324 -15.32261 -15.05620 -14.89549 -14.71017 -14.06533 -13.88104 -13.49650 -13.40247 -13.12420 -12.97729 -12.81141 -12.71477 -12.64598 -12.61108 -12.35992 -12.27814 -12.23248 -12.15485 -12.11306 -11.99165 -11.84600 -11.48635 -11.17257 -10.67475 -10.63436 -9.65584 -9.29322 -9.04353 -8.21899 -6.32643 -1.17063 -0.06853 0.29475 0.44057 1.40688 1.41220 1.54657 1.91510 2.15617 2.39203 3.04321 3.10706 3.26388 3.29865 3.47783 3.62970 3.83087 3.89100 3.99898 4.14720 4.22151 4.26627 4.34306 4.36440 4.41557 4.47130 4.55632 4.63812 4.67911 4.69917 4.74734 4.84922 4.87544 4.98222 5.02637 5.04479 5.10634 5.21942 5.23737 5.27932 5.34380 5.62674 5.96609 5.99264 6.04255 6.08950 6.33056 6.55549 6.60928 6.83874 7.37527 8.89761 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014447 B = 0.002558 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.714723 B =10945.145928 C =11700.181452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.007 3.993 2 O -0.309 6.309 3 C 0.188 3.812 4 C -0.202 4.202 5 C -0.008 4.008 6 C -0.111 4.111 7 C 0.100 3.900 8 N -0.551 5.551 9 C 0.069 3.931 10 C 0.067 3.933 11 N -0.541 5.541 12 C 0.208 3.792 13 C -0.521 4.521 14 H 0.067 0.933 15 C -0.002 4.002 16 N -0.937 5.937 17 Si 0.972 3.028 18 H -0.258 1.258 19 H -0.280 1.280 20 H -0.279 1.279 21 C 0.051 3.949 22 C 0.074 3.926 23 C -0.006 4.006 24 C -0.108 4.108 25 N 0.040 4.960 26 O -0.206 6.206 27 O -0.170 6.170 28 H 0.083 0.917 29 H 0.122 0.878 30 H 0.077 0.923 31 H 0.186 0.814 32 H 0.174 0.826 33 H 0.102 0.898 34 H 0.073 0.927 35 H 0.051 0.949 36 H 0.090 0.910 37 H 0.005 0.995 38 H 0.069 0.931 39 H -0.045 1.045 40 H 0.003 0.997 41 H 0.264 0.736 42 H 0.015 0.985 43 H 0.071 0.929 44 H 0.101 0.899 45 H 0.049 0.951 46 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.128 -11.717 -21.707 26.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 O -0.220 6.220 3 C 0.138 3.862 4 C -0.220 4.220 5 C -0.026 4.026 6 C -0.112 4.112 7 C -0.027 4.027 8 N -0.277 5.277 9 C -0.059 4.059 10 C -0.061 4.061 11 N -0.266 5.266 12 C 0.081 3.919 13 C -0.559 4.559 14 H 0.085 0.915 15 C -0.199 4.199 16 N -0.577 5.577 17 Si 0.796 3.204 18 H -0.182 1.182 19 H -0.206 1.206 20 H -0.205 1.205 21 C -0.078 4.078 22 C -0.054 4.054 23 C -0.026 4.026 24 C -0.194 4.194 25 N 0.551 4.449 26 O -0.412 6.412 27 O -0.386 6.386 28 H 0.102 0.898 29 H 0.140 0.860 30 H 0.095 0.905 31 H 0.203 0.797 32 H 0.192 0.808 33 H 0.121 0.879 34 H 0.091 0.909 35 H 0.070 0.930 36 H 0.108 0.892 37 H 0.023 0.977 38 H 0.087 0.913 39 H -0.028 1.028 40 H 0.021 0.979 41 H 0.073 0.927 42 H 0.033 0.967 43 H 0.089 0.911 44 H 0.119 0.881 45 H 0.068 0.932 46 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -9.318 -11.295 -21.557 26.060 hybrid contribution 0.039 -0.125 1.248 1.254 sum -9.279 -11.420 -20.310 25.080 Atomic orbital electron populations 1.23658 0.74723 1.06668 1.03537 1.86391 1.24922 1.24840 1.85870 1.18949 0.88959 0.87580 0.90718 1.21658 1.02471 0.89607 1.08298 1.21780 0.93715 0.99092 0.88042 1.19755 0.93743 0.94288 1.03440 1.21041 1.01613 0.91240 0.88785 1.62130 1.14973 1.34704 1.15847 1.22159 0.90949 1.00218 0.92533 1.21991 0.97439 0.89906 0.96808 1.62246 1.14131 1.32857 1.17328 1.19355 0.96283 0.92579 0.83659 1.21478 0.95515 1.41436 0.97460 0.91530 1.25974 1.00379 0.96026 0.97562 1.70106 1.29630 1.48213 1.09798 0.85300 0.79085 0.77791 0.78232 1.18209 1.20624 1.20472 1.22199 0.91368 0.98922 0.95278 1.22069 0.97864 0.90871 0.94577 1.20872 1.02369 0.88247 0.91097 1.20761 0.88860 0.84798 1.24939 1.43701 1.01185 1.03177 0.96880 1.94508 0.96598 1.94242 1.55804 1.94537 1.74248 1.16191 1.53582 0.89819 0.86023 0.90487 0.79669 0.80838 0.87947 0.90878 0.93040 0.89194 0.97654 0.91299 1.02783 0.97886 0.92717 0.96715 0.91053 0.88096 0.93246 0.82617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.06 9.81 113.37 1.11 1.17 16 2 O -0.31 -5.79 8.51 -71.31 -0.61 -6.40 16 3 C 0.19 3.51 6.67 22.51 0.15 3.66 16 4 C -0.20 -2.26 9.04 22.36 0.20 -2.06 16 5 C -0.01 -0.09 7.91 22.25 0.18 0.09 16 6 C -0.11 -1.69 4.89 -19.85 -0.10 -1.79 16 7 C 0.10 1.48 5.11 85.56 0.44 1.91 16 8 N -0.55 -12.69 4.70 -900.25 -4.23 -16.92 16 9 C 0.07 1.76 5.25 86.31 0.45 2.22 16 10 C 0.07 2.52 5.43 86.31 0.47 2.99 16 11 N -0.54 -22.94 4.70 -900.28 -4.23 -27.18 16 12 C 0.21 11.17 4.72 85.56 0.40 11.57 16 13 C -0.52 -29.18 8.47 25.60 0.22 -28.96 16 14 H 0.07 3.60 7.13 -2.91 -0.02 3.58 16 15 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 16 N -0.94 -56.67 13.29 21.45 0.28 -56.39 16 17 Si 0.97 43.52 29.54 68.60 2.03 45.55 16 18 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 19 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 20 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 21 C 0.05 1.78 5.61 86.31 0.48 2.27 16 22 C 0.07 1.81 5.61 86.31 0.48 2.29 16 23 C -0.01 -0.12 9.20 22.25 0.20 0.08 16 24 C -0.11 -2.55 6.87 36.48 0.25 -2.30 16 25 N 0.04 1.20 4.45 -46.24 -0.21 0.99 16 26 O -0.21 -6.50 18.45 18.88 0.35 -6.15 16 27 O -0.17 -5.39 17.24 25.61 0.44 -4.94 16 28 H 0.08 0.26 7.66 -2.39 -0.02 0.25 16 29 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.08 0.38 7.66 -2.39 -0.02 0.36 16 31 H 0.19 0.74 6.30 -2.91 -0.02 0.72 16 32 H 0.17 0.97 7.99 -2.91 -0.02 0.94 16 33 H 0.10 1.27 7.97 -2.38 -0.02 1.25 16 34 H 0.07 0.82 8.06 -2.39 -0.02 0.80 16 35 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.09 1.90 5.95 -2.38 -0.01 1.89 16 37 H 0.01 0.22 8.14 -2.38 -0.02 0.20 16 38 H 0.07 2.78 6.79 -2.39 -0.02 2.76 16 39 H -0.05 -2.72 8.12 -2.39 -0.02 -2.74 16 40 H 0.00 0.18 8.03 -2.39 -0.02 0.16 16 41 H 0.26 14.96 8.31 -92.70 -0.77 14.19 16 42 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 43 H 0.07 2.48 8.07 -2.39 -0.02 2.46 16 44 H 0.10 1.95 8.07 -2.39 -0.02 1.93 16 45 H 0.05 1.16 8.14 -2.39 -0.02 1.15 16 46 H 0.16 3.08 7.61 -2.91 -0.02 3.06 16 Total: -1.00 -76.16 376.69 0.22 -75.94 By element: Atomic # 1 Polarization: 1.01 SS G_CDS: 0.99 Total: 2.00 kcal Atomic # 6 Polarization: -11.91 SS G_CDS: 5.41 Total: -6.50 kcal Atomic # 7 Polarization: -91.11 SS G_CDS: -8.39 Total: -99.50 kcal Atomic # 8 Polarization: -17.68 SS G_CDS: 0.18 Total: -17.50 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -76.16 0.22 -75.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611173691.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.438 kcal (2) G-P(sol) polarization free energy of solvation -76.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds