Wall clock time and date at job start Tue Mar 31 2020 18:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46510 * 1 3 3 C 1.34218 * 125.73910 * 2 1 4 4 C 1.38130 * 107.40771 * 180.02562 * 3 2 1 5 5 C 1.47286 * 126.42841 * 179.97438 * 4 3 2 6 6 O 1.21530 * 119.99856 * 180.02562 * 5 4 3 7 7 O 1.34754 * 120.00018 * 0.02663 * 5 4 3 8 8 C 1.45201 * 116.99594 * 180.02562 * 7 5 4 9 9 C 1.50700 * 109.46841 * 179.97438 * 8 7 5 10 10 O 1.21297 * 119.99998 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00098 * 179.97438 * 9 8 7 12 12 C 1.37105 * 119.99874 * 179.97438 * 11 9 8 13 13 H 1.07997 * 119.99916 * 0.02562 * 12 11 9 14 14 C 1.38950 * 119.99753 * 180.02562 * 12 11 9 15 15 N 1.31414 * 119.99941 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99914 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47084 * 60.00039 * 16 14 12 18 18 H 1.48504 * 109.47097 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.46967 * 299.99845 * 16 14 12 20 20 C 1.41343 * 107.14070 * 0.26111 * 4 3 2 21 21 C 1.50699 * 125.99198 * 179.73876 * 20 4 3 22 22 C 1.52996 * 109.47142 * 239.99974 * 21 20 4 23 23 C 1.53007 * 109.47245 * 179.97438 * 22 21 20 24 24 C 1.52990 * 109.46905 * 60.00118 * 23 22 21 25 25 C 1.53007 * 109.47110 * 299.99668 * 24 23 22 26 26 C 1.52998 * 109.46905 * 60.00477 * 25 24 23 27 27 N 1.30435 * 108.01557 * 359.55551 * 20 4 3 28 28 H 1.09004 * 109.46883 * 90.00492 * 1 2 3 29 29 H 1.08996 * 109.47095 * 210.00072 * 1 2 3 30 30 H 1.08997 * 109.47143 * 330.00524 * 1 2 3 31 31 H 1.08002 * 126.29947 * 0.03853 * 3 2 1 32 32 H 1.08999 * 109.47057 * 299.99574 * 8 7 5 33 33 H 1.08999 * 109.46972 * 60.00005 * 8 7 5 34 34 H 0.96997 * 120.00128 * 0.02562 * 11 9 8 35 35 H 0.96999 * 119.99978 * 180.02562 * 15 14 12 36 36 H 1.09002 * 109.47017 * 359.97438 * 21 20 4 37 37 H 1.09002 * 109.47354 * 300.00029 * 22 21 20 38 38 H 1.09002 * 109.47197 * 59.99943 * 22 21 20 39 39 H 1.09002 * 109.47136 * 299.99813 * 23 22 21 40 40 H 1.09004 * 109.47055 * 180.02562 * 23 22 21 41 41 H 1.09007 * 109.47185 * 180.02562 * 24 23 22 42 42 H 1.09002 * 109.47734 * 60.00384 * 24 23 22 43 43 H 1.08992 * 109.47134 * 300.00427 * 25 24 23 44 44 H 1.09007 * 109.46888 * 180.02562 * 25 24 23 45 45 H 1.08996 * 109.47147 * 180.02562 * 26 25 24 46 46 H 1.09002 * 109.47254 * 60.00027 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2491 1.0894 0.0000 4 6 3.5603 0.6550 -0.0006 5 6 4.7632 1.5048 -0.0013 6 8 5.8668 0.9958 -0.0023 7 8 4.6401 2.8468 -0.0009 8 6 5.8683 3.6213 -0.0023 9 6 5.5353 5.0910 -0.0023 10 8 4.3768 5.4504 -0.0007 11 7 6.5247 6.0062 -0.0029 12 6 6.2216 7.3433 -0.0034 13 1 5.1901 7.6632 -0.0029 14 6 7.2417 8.2868 -0.0046 15 7 8.4968 7.8975 -0.0058 16 14 6.8289 10.1086 -0.0046 17 1 6.0379 10.4369 1.2086 18 1 8.0849 10.9008 -0.0066 19 1 6.0356 10.4364 -1.2164 20 6 3.5309 -0.7581 -0.0071 21 6 4.7315 -1.6688 -0.0156 22 6 4.6976 -2.5458 -1.2688 23 6 5.9169 -3.4701 -1.2777 24 6 5.8923 -4.3587 -0.0326 25 6 5.9263 -3.4817 1.2207 26 6 4.7070 -2.5575 1.2296 27 7 2.2824 -1.1357 -0.0005 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5137 31 1 1.9160 2.1168 0.0006 32 1 6.4508 3.3803 0.8870 33 1 6.4486 3.3806 -0.8930 34 1 7.4511 5.7189 -0.0038 35 1 9.2089 8.5561 -0.0062 36 1 5.6421 -1.0696 -0.0164 37 1 3.7870 -3.1450 -1.2684 38 1 4.7155 -1.9127 -2.1559 39 1 6.8273 -2.8706 -1.2783 40 1 5.8930 -4.0945 -2.1708 41 1 6.7613 -5.0169 -0.0387 42 1 4.9820 -4.9583 -0.0319 43 1 6.8366 -2.8822 1.2201 44 1 5.9093 -4.1149 2.1078 45 1 4.7315 -1.9324 2.1222 46 1 3.7967 -3.1570 1.2303 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731243364.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:25 Heat of formation + Delta-G solvation = -69.495751 kcal Electronic energy + Delta-G solvation = -28536.916870 eV Core-core repulsion = 24427.449574 eV Total energy + Delta-G solvation = -4109.467296 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.66852 -39.74740 -38.50095 -38.01822 -35.88915 -33.98202 -33.94199 -31.41096 -31.24154 -30.85573 -30.40011 -28.29836 -26.96903 -24.70962 -23.50255 -22.67256 -22.57533 -21.01136 -19.85992 -19.56509 -19.22936 -18.03079 -17.72366 -16.73784 -16.26418 -15.93731 -15.64180 -15.61487 -15.29975 -14.52808 -14.44166 -14.27819 -14.22668 -13.98411 -13.92028 -13.61412 -13.23872 -13.13764 -12.83267 -12.40617 -12.31074 -12.29753 -12.16068 -11.89421 -11.61230 -11.38690 -11.22479 -11.12140 -11.10299 -10.70014 -10.48373 -10.37012 -10.35144 -10.30228 -10.28501 -9.93028 -9.57951 -9.47991 -8.85871 -8.49369 -8.06500 -6.48295 -3.90354 1.31685 1.95787 2.10337 2.91896 3.16089 3.23368 3.28082 3.28370 3.77004 4.08465 4.15826 4.39708 4.61401 4.67426 4.68000 4.81065 4.83773 4.93279 5.02249 5.07612 5.17334 5.17745 5.26365 5.37947 5.39676 5.42769 5.42953 5.46728 5.56632 5.69178 5.70122 5.76976 5.90544 5.96933 6.05367 6.05643 6.09344 6.13593 6.21306 6.28313 6.41959 6.61186 6.79942 7.42150 7.48841 7.93232 8.10270 8.50871 9.08608 9.41646 9.91673 10.68934 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015831 B = 0.002390 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.204782 B =11712.037712 C =13128.833810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.364 5.364 3 C 0.134 3.866 4 C -0.276 4.276 5 C 0.540 3.460 6 O -0.517 6.517 7 O -0.327 6.327 8 C 0.063 3.937 9 C 0.440 3.560 10 O -0.578 6.578 11 N -0.553 5.553 12 C -0.303 4.303 13 H 0.105 0.895 14 C 0.025 3.975 15 N -0.897 5.897 16 Si 0.934 3.066 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.273 1.273 20 C 0.146 3.854 21 C -0.023 4.023 22 C -0.106 4.106 23 C -0.119 4.119 24 C -0.119 4.119 25 C -0.119 4.119 26 C -0.106 4.106 27 N -0.298 5.298 28 H 0.080 0.920 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.196 0.804 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.395 0.605 35 H 0.274 0.726 36 H 0.117 0.883 37 H 0.065 0.935 38 H 0.061 0.939 39 H 0.066 0.934 40 H 0.061 0.939 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.066 0.934 44 H 0.061 0.939 45 H 0.062 0.938 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.672 -22.014 0.026 24.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.141 5.141 3 C -0.018 4.018 4 C -0.289 4.289 5 C 0.385 3.615 6 O -0.408 6.408 7 O -0.241 6.241 8 C -0.014 4.014 9 C 0.225 3.775 10 O -0.463 6.463 11 N -0.190 5.190 12 C -0.432 4.432 13 H 0.123 0.877 14 C -0.178 4.178 15 N -0.538 5.538 16 Si 0.761 3.239 17 H -0.198 1.198 18 H -0.209 1.209 19 H -0.198 1.198 20 C -0.021 4.021 21 C -0.043 4.043 22 C -0.144 4.144 23 C -0.156 4.156 24 C -0.157 4.157 25 C -0.157 4.157 26 C -0.144 4.144 27 N -0.118 5.118 28 H 0.099 0.901 29 H 0.111 0.889 30 H 0.112 0.888 31 H 0.213 0.787 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.229 0.771 35 H 0.084 0.916 36 H 0.135 0.865 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.085 0.915 44 H 0.080 0.920 45 H 0.080 0.920 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.940 -22.755 0.032 25.249 hybrid contribution 0.957 1.625 -0.016 1.886 sum -9.983 -21.130 0.016 23.369 Atomic orbital electron populations 1.22016 0.73293 1.05063 1.03992 1.48353 1.07255 1.03935 1.54591 1.23432 0.90201 0.94209 0.93988 1.19334 0.91174 0.92643 1.25780 1.20034 0.87946 0.81080 0.72432 1.90745 1.27528 1.74710 1.47807 1.86578 1.36332 1.17603 1.83615 1.22703 0.84345 0.90860 1.03526 1.19348 0.86720 0.85709 0.85760 1.90541 1.19454 1.80900 1.55378 1.41701 1.07715 1.05761 1.63858 1.19665 0.95058 0.80161 1.48282 0.87714 1.25307 0.94646 1.00870 0.96938 1.69608 0.98841 1.35702 1.49636 0.85866 0.77607 0.81298 0.79151 1.19780 1.20879 1.19786 1.22389 0.93298 0.91578 0.94877 1.20068 0.93885 0.94335 0.96009 1.21513 0.98649 0.97454 0.96788 1.21531 0.98530 0.97864 0.97723 1.21542 1.01591 0.97750 0.94772 1.21532 0.98531 0.97907 0.97683 1.21509 0.98648 0.97381 0.96853 1.77144 1.00992 1.07133 1.26515 0.90129 0.88899 0.88779 0.78670 0.89538 0.89547 0.77125 0.91585 0.86472 0.91648 0.91977 0.91535 0.91981 0.92147 0.92123 0.91536 0.91981 0.91966 0.91646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.56 11.44 59.85 0.68 1.25 16 2 N -0.36 -3.92 3.98 -67.58 -0.27 -4.18 16 3 C 0.13 1.62 11.33 -16.55 -0.19 1.43 16 4 C -0.28 -4.08 6.13 -105.08 -0.64 -4.72 16 5 C 0.54 9.28 7.95 34.41 0.27 9.55 16 6 O -0.52 -9.38 14.36 -19.29 -0.28 -9.65 16 7 O -0.33 -6.21 9.58 -47.32 -0.45 -6.66 16 8 C 0.06 1.22 5.95 36.01 0.21 1.44 16 9 C 0.44 10.58 7.86 -10.99 -0.09 10.50 16 10 O -0.58 -15.87 16.08 -14.12 -0.23 -16.10 16 11 N -0.55 -13.98 5.29 -10.96 -0.06 -14.04 16 12 C -0.30 -8.32 9.68 -14.93 -0.14 -8.47 16 13 H 0.11 2.99 7.16 -52.49 -0.38 2.62 16 14 C 0.02 0.66 5.50 -17.47 -0.10 0.56 16 15 N -0.90 -24.09 13.05 55.50 0.72 -23.36 16 16 Si 0.93 20.66 29.55 -169.99 -5.02 15.63 16 17 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 18 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 19 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 20 C 0.15 2.00 5.77 -82.01 -0.47 1.53 16 21 C -0.02 -0.28 2.53 -91.77 -0.23 -0.51 16 22 C -0.11 -1.13 5.19 -26.73 -0.14 -1.27 16 23 C -0.12 -1.07 5.92 -26.73 -0.16 -1.23 16 24 C -0.12 -0.98 5.92 -26.73 -0.16 -1.14 16 25 C -0.12 -1.07 5.92 -26.73 -0.16 -1.23 16 26 C -0.11 -1.13 5.19 -26.73 -0.14 -1.27 16 27 N -0.30 -3.81 12.50 33.90 0.42 -3.39 16 28 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.20 1.99 8.06 -52.49 -0.42 1.56 16 32 H 0.09 1.53 8.14 -51.93 -0.42 1.10 16 33 H 0.09 1.53 8.14 -51.93 -0.42 1.10 16 34 H 0.40 9.49 7.90 -40.82 -0.32 9.17 16 35 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 36 H 0.12 1.65 5.61 -51.93 -0.29 1.36 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.44 8.14 -51.92 -0.42 0.01 16 42 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 387.14 15.07 5.83 5.83 Total: -1.00 -33.55 387.14 -7.66 -41.21 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: -6.89 Total: 8.31 kcal Atomic # 6 Polarization: 7.85 SS G_CDS: -1.44 Total: 6.41 kcal Atomic # 7 Polarization: -45.80 SS G_CDS: 0.82 Total: -44.98 kcal Atomic # 8 Polarization: -31.46 SS G_CDS: -0.96 Total: -32.41 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.55 -7.66 -41.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731243364.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.287 kcal (2) G-P(sol) polarization free energy of solvation -33.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds