Wall clock time and date at job start Tue Mar 31 2020 18:19:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46510 * 1 3 3 C 1.34218 * 125.73910 * 2 1 4 4 C 1.38130 * 107.40771 * 180.02562 * 3 2 1 5 5 C 1.47286 * 126.42841 * 179.97438 * 4 3 2 6 6 O 1.21530 * 119.99856 * 180.02562 * 5 4 3 7 7 O 1.34754 * 120.00018 * 0.02663 * 5 4 3 8 8 C 1.45201 * 116.99594 * 180.02562 * 7 5 4 9 9 C 1.50700 * 109.46841 * 179.97438 * 8 7 5 10 10 O 1.21297 * 119.99998 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00098 * 179.97438 * 9 8 7 12 12 C 1.37105 * 119.99874 * 179.97438 * 11 9 8 13 13 H 1.07997 * 119.99916 * 0.02562 * 12 11 9 14 14 C 1.38950 * 119.99753 * 180.02562 * 12 11 9 15 15 N 1.31414 * 119.99941 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99914 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47084 * 60.00039 * 16 14 12 18 18 H 1.48504 * 109.47097 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.46967 * 299.99845 * 16 14 12 20 20 C 1.41343 * 107.14070 * 0.26111 * 4 3 2 21 21 C 1.50699 * 125.99198 * 179.73876 * 20 4 3 22 22 C 1.52996 * 109.47142 * 239.99974 * 21 20 4 23 23 C 1.53007 * 109.47245 * 179.97438 * 22 21 20 24 24 C 1.52990 * 109.46905 * 60.00118 * 23 22 21 25 25 C 1.53007 * 109.47110 * 299.99668 * 24 23 22 26 26 C 1.52998 * 109.46905 * 60.00477 * 25 24 23 27 27 N 1.30435 * 108.01557 * 359.55551 * 20 4 3 28 28 H 1.09004 * 109.46883 * 90.00492 * 1 2 3 29 29 H 1.08996 * 109.47095 * 210.00072 * 1 2 3 30 30 H 1.08997 * 109.47143 * 330.00524 * 1 2 3 31 31 H 1.08002 * 126.29947 * 0.03853 * 3 2 1 32 32 H 1.08999 * 109.47057 * 299.99574 * 8 7 5 33 33 H 1.08999 * 109.46972 * 60.00005 * 8 7 5 34 34 H 0.96997 * 120.00128 * 0.02562 * 11 9 8 35 35 H 0.96999 * 119.99978 * 180.02562 * 15 14 12 36 36 H 1.09002 * 109.47017 * 359.97438 * 21 20 4 37 37 H 1.09002 * 109.47354 * 300.00029 * 22 21 20 38 38 H 1.09002 * 109.47197 * 59.99943 * 22 21 20 39 39 H 1.09002 * 109.47136 * 299.99813 * 23 22 21 40 40 H 1.09004 * 109.47055 * 180.02562 * 23 22 21 41 41 H 1.09007 * 109.47185 * 180.02562 * 24 23 22 42 42 H 1.09002 * 109.47734 * 60.00384 * 24 23 22 43 43 H 1.08992 * 109.47134 * 300.00427 * 25 24 23 44 44 H 1.09007 * 109.46888 * 180.02562 * 25 24 23 45 45 H 1.08996 * 109.47147 * 180.02562 * 26 25 24 46 46 H 1.09002 * 109.47254 * 60.00027 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2491 1.0894 0.0000 4 6 3.5603 0.6550 -0.0006 5 6 4.7632 1.5048 -0.0013 6 8 5.8668 0.9958 -0.0023 7 8 4.6401 2.8468 -0.0009 8 6 5.8683 3.6213 -0.0023 9 6 5.5353 5.0910 -0.0023 10 8 4.3768 5.4504 -0.0007 11 7 6.5247 6.0062 -0.0029 12 6 6.2216 7.3433 -0.0034 13 1 5.1901 7.6632 -0.0029 14 6 7.2417 8.2868 -0.0046 15 7 8.4968 7.8975 -0.0058 16 14 6.8289 10.1086 -0.0046 17 1 6.0379 10.4369 1.2086 18 1 8.0849 10.9008 -0.0066 19 1 6.0356 10.4364 -1.2164 20 6 3.5309 -0.7581 -0.0071 21 6 4.7315 -1.6688 -0.0156 22 6 4.6976 -2.5458 -1.2688 23 6 5.9169 -3.4701 -1.2777 24 6 5.8923 -4.3587 -0.0326 25 6 5.9263 -3.4817 1.2207 26 6 4.7070 -2.5575 1.2296 27 7 2.2824 -1.1357 -0.0005 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5137 31 1 1.9160 2.1168 0.0006 32 1 6.4508 3.3803 0.8870 33 1 6.4486 3.3806 -0.8930 34 1 7.4511 5.7189 -0.0038 35 1 9.2089 8.5561 -0.0062 36 1 5.6421 -1.0696 -0.0164 37 1 3.7870 -3.1450 -1.2684 38 1 4.7155 -1.9127 -2.1559 39 1 6.8273 -2.8706 -1.2783 40 1 5.8930 -4.0945 -2.1708 41 1 6.7613 -5.0169 -0.0387 42 1 4.9820 -4.9583 -0.0319 43 1 6.8366 -2.8822 1.2201 44 1 5.9093 -4.1149 2.1078 45 1 4.7315 -1.9324 2.1222 46 1 3.7967 -3.1570 1.2303 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731243364.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:24 Heat of formation + Delta-G solvation = -89.184491 kcal Electronic energy + Delta-G solvation = -28537.770637 eV Core-core repulsion = 24427.449574 eV Total energy + Delta-G solvation = -4110.321064 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.66107 -41.17612 -39.91219 -39.30274 -37.34291 -36.00530 -34.77343 -33.40290 -32.22641 -31.64522 -31.31603 -29.89110 -27.80331 -26.58709 -24.60533 -23.49159 -23.46117 -22.08626 -21.39689 -20.81312 -20.20432 -20.01036 -18.95312 -18.00586 -17.66190 -17.54984 -16.86491 -16.56930 -16.44816 -16.23595 -15.74255 -15.57674 -15.20210 -15.13759 -15.06395 -14.73003 -14.41059 -14.08270 -13.77209 -13.66792 -13.54992 -13.47734 -13.11111 -13.09387 -13.04695 -12.91688 -12.47476 -12.30929 -12.13246 -12.11947 -12.01900 -11.80880 -11.55080 -11.54210 -11.24511 -11.13498 -10.98653 -10.48535 -10.39279 -10.10470 -9.86092 -8.50735 -6.01422 0.25682 0.90321 1.21811 1.38791 1.43147 1.52908 1.63310 1.88492 2.07049 2.31551 3.07577 3.14926 3.26590 3.49460 3.84666 3.85988 3.88306 3.96055 4.14233 4.19883 4.24181 4.24986 4.32865 4.38192 4.40640 4.44017 4.60075 4.60946 4.61789 4.63509 4.69366 4.74262 4.92047 5.12487 5.19537 5.21829 5.27222 5.29538 5.37777 5.39443 5.41631 5.47387 5.62896 5.78451 5.90603 6.43572 6.48207 6.75623 7.04072 7.41629 7.94638 8.66173 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015831 B = 0.002390 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.204782 B =11712.037712 C =13128.833810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.354 5.354 3 C 0.145 3.855 4 C -0.312 4.312 5 C 0.540 3.460 6 O -0.534 6.534 7 O -0.340 6.340 8 C 0.074 3.926 9 C 0.439 3.561 10 O -0.616 6.616 11 N -0.559 5.559 12 C -0.338 4.338 13 H 0.086 0.914 14 C -0.010 4.010 15 N -0.916 5.916 16 Si 0.998 3.002 17 H -0.269 1.269 18 H -0.270 1.270 19 H -0.269 1.269 20 C 0.140 3.860 21 C -0.024 4.024 22 C -0.100 4.100 23 C -0.118 4.118 24 C -0.115 4.115 25 C -0.118 4.118 26 C -0.100 4.100 27 N -0.307 5.307 28 H 0.097 0.903 29 H 0.103 0.897 30 H 0.119 0.881 31 H 0.215 0.785 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.400 0.600 35 H 0.281 0.719 36 H 0.095 0.905 37 H 0.067 0.933 38 H 0.049 0.951 39 H 0.058 0.942 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.067 0.933 43 H 0.058 0.942 44 H 0.076 0.924 45 H 0.050 0.950 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.520 -22.780 0.029 25.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.130 5.130 3 C -0.009 4.009 4 C -0.325 4.325 5 C 0.387 3.613 6 O -0.425 6.425 7 O -0.255 6.255 8 C -0.004 4.004 9 C 0.226 3.774 10 O -0.502 6.502 11 N -0.196 5.196 12 C -0.466 4.466 13 H 0.104 0.896 14 C -0.210 4.210 15 N -0.556 5.556 16 Si 0.821 3.179 17 H -0.194 1.194 18 H -0.195 1.195 19 H -0.194 1.194 20 C -0.028 4.028 21 C -0.045 4.045 22 C -0.138 4.138 23 C -0.155 4.155 24 C -0.153 4.153 25 C -0.155 4.155 26 C -0.138 4.138 27 N -0.127 5.127 28 H 0.116 0.884 29 H 0.122 0.878 30 H 0.137 0.863 31 H 0.231 0.769 32 H 0.123 0.877 33 H 0.122 0.878 34 H 0.234 0.766 35 H 0.090 0.910 36 H 0.113 0.887 37 H 0.086 0.914 38 H 0.068 0.932 39 H 0.077 0.923 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.086 0.914 43 H 0.077 0.923 44 H 0.094 0.906 45 H 0.068 0.932 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.789 -23.563 0.035 26.347 hybrid contribution 1.116 1.818 -0.019 2.133 sum -10.673 -21.745 0.016 24.223 Atomic orbital electron populations 1.22490 0.70267 1.06914 1.05690 1.48788 1.08799 1.02947 1.52467 1.23666 0.89538 0.95244 0.92474 1.19399 0.91356 0.92941 1.28780 1.20402 0.88729 0.80314 0.71832 1.90731 1.28324 1.74622 1.48839 1.86569 1.36067 1.18695 1.84170 1.22487 0.84851 0.87789 1.05241 1.20052 0.85882 0.87461 0.84008 1.90505 1.20933 1.82067 1.56743 1.41741 1.08193 1.05569 1.64091 1.19693 0.94689 0.81609 1.50652 0.89629 1.26139 0.94320 1.04884 0.95704 1.69673 0.99493 1.37270 1.49201 0.84914 0.77851 0.75978 0.79162 1.19424 1.19498 1.19438 1.22576 0.94007 0.91345 0.94830 1.20058 0.92549 0.94372 0.97475 1.21462 0.99613 0.97285 0.95464 1.21536 0.97235 0.97766 0.98969 1.21530 1.02612 0.97528 0.93606 1.21537 0.97237 0.97810 0.98927 1.21459 0.99615 0.97208 0.95529 1.77101 1.00782 1.08094 1.26743 0.88444 0.87815 0.86260 0.76884 0.87742 0.87755 0.76600 0.90987 0.88716 0.91397 0.93177 0.92343 0.90561 0.90691 0.91432 0.92347 0.90555 0.93161 0.91386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.75 11.44 127.77 1.46 2.22 16 2 N -0.35 -7.02 3.98 -367.72 -1.46 -8.49 16 3 C 0.15 3.37 11.33 84.30 0.96 4.32 16 4 C -0.31 -9.24 6.13 -20.16 -0.12 -9.37 16 5 C 0.54 18.86 7.95 70.20 0.56 19.42 16 6 O -0.53 -19.78 14.36 19.74 0.28 -19.49 16 7 O -0.34 -13.02 9.58 -50.26 -0.48 -13.50 16 8 C 0.07 2.85 5.95 71.24 0.42 3.28 16 9 C 0.44 21.49 7.86 87.66 0.69 22.18 16 10 O -0.62 -34.52 16.08 15.72 0.25 -34.27 16 11 N -0.56 -28.73 5.29 -306.98 -1.62 -30.35 16 12 C -0.34 -18.88 9.68 84.04 0.81 -18.06 16 13 H 0.09 5.04 7.16 -2.91 -0.02 5.01 16 14 C -0.01 -0.52 5.50 84.93 0.47 -0.05 16 15 N -0.92 -48.83 13.05 21.66 0.28 -48.55 16 16 Si 1.00 41.87 29.55 68.60 2.03 43.89 16 17 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 18 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 19 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 20 C 0.14 3.83 5.77 43.53 0.25 4.08 16 21 C -0.02 -0.60 2.53 -11.54 -0.03 -0.63 16 22 C -0.10 -2.12 5.19 30.60 0.16 -1.96 16 23 C -0.12 -2.02 5.92 30.59 0.18 -1.84 16 24 C -0.12 -1.71 5.92 30.59 0.18 -1.53 16 25 C -0.12 -2.02 5.92 30.60 0.18 -1.83 16 26 C -0.10 -2.11 5.19 30.59 0.16 -1.95 16 27 N -0.31 -7.58 12.50 -46.65 -0.58 -8.16 16 28 H 0.10 0.61 8.14 -2.38 -0.02 0.59 16 29 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.21 4.05 8.06 -2.91 -0.02 4.03 16 32 H 0.10 3.67 8.14 -2.39 -0.02 3.65 16 33 H 0.10 3.67 8.14 -2.39 -0.02 3.65 16 34 H 0.40 19.47 7.90 -92.71 -0.73 18.74 16 35 H 0.28 13.98 8.31 -92.71 -0.77 13.21 16 36 H 0.09 2.79 5.61 -2.39 -0.01 2.77 16 37 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 41 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 42 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.06 1.09 8.14 -2.39 -0.02 1.08 16 44 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 45 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 46 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -72.77 387.14 5.29 -67.48 By element: Atomic # 1 Polarization: 32.91 SS G_CDS: 0.27 Total: 33.17 kcal Atomic # 6 Polarization: 11.94 SS G_CDS: 6.33 Total: 18.27 kcal Atomic # 7 Polarization: -92.17 SS G_CDS: -3.39 Total: -95.55 kcal Atomic # 8 Polarization: -67.32 SS G_CDS: 0.05 Total: -67.26 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.89 kcal Total: -72.77 5.29 -67.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731243364.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.709 kcal (2) G-P(sol) polarization free energy of solvation -72.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds