Wall clock time and date at job start Tue Mar 31 2020 18:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34773 * 119.99617 * 2 1 4 4 O 1.21286 * 120.00566 * 0.02562 * 3 2 1 5 5 C 1.50709 * 119.99657 * 179.97438 * 3 2 1 6 6 C 1.53006 * 109.46894 * 180.02562 * 5 3 2 7 7 N 1.46501 * 109.46475 * 179.97438 * 6 5 3 8 8 C 1.46499 * 120.00091 * 269.99903 * 7 6 5 9 9 C 1.34778 * 119.99866 * 90.00876 * 7 6 5 10 10 O 1.21584 * 119.99654 * 359.97438 * 9 7 6 11 11 N 1.34769 * 119.99808 * 179.97438 * 9 7 6 12 12 C 1.46508 * 120.00011 * 179.97438 * 11 9 7 13 13 C 1.50695 * 109.47103 * 179.97438 * 12 11 9 14 14 C 1.38299 * 119.93247 * 90.00118 * 13 12 11 15 15 C 1.38101 * 120.07425 * 179.97438 * 14 13 12 16 16 C 1.38886 * 119.92536 * 0.02562 * 15 14 13 17 17 O 1.35750 * 120.06440 * 180.02562 * 16 15 14 18 18 C 1.34828 * 117.00075 * 5.53777 * 17 16 15 19 19 H 1.07993 * 120.00518 * 354.94289 * 18 17 16 20 20 C 1.38663 * 119.99751 * 174.94575 * 18 17 16 21 21 N 1.31556 * 120.00220 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 119.99821 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47517 * 59.99414 * 22 20 18 24 24 H 1.48505 * 109.47332 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.46989 * 299.99567 * 22 20 18 26 26 C 1.38874 * 119.86623 * 0.27854 * 16 15 14 27 27 C 1.38106 * 119.92542 * 359.44577 * 26 16 15 28 28 H 1.09000 * 109.46890 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47323 * 299.99946 * 1 2 3 30 30 H 1.08999 * 109.46500 * 60.00044 * 1 2 3 31 31 H 0.96996 * 120.00174 * 179.97438 * 2 1 3 32 32 H 1.08999 * 109.47044 * 60.00267 * 5 3 2 33 33 H 1.08999 * 109.46739 * 300.00193 * 5 3 2 34 34 H 1.08999 * 109.47071 * 60.00266 * 6 5 3 35 35 H 1.08990 * 109.47112 * 300.00026 * 6 5 3 36 36 H 1.09008 * 109.47115 * 270.00402 * 8 7 6 37 37 H 1.09004 * 109.47392 * 30.00446 * 8 7 6 38 38 H 1.08993 * 109.47095 * 150.00535 * 8 7 6 39 39 H 0.97001 * 120.00514 * 359.97438 * 11 9 7 40 40 H 1.08998 * 109.46632 * 59.99915 * 12 11 9 41 41 H 1.08996 * 109.47144 * 299.99646 * 12 11 9 42 42 H 1.07999 * 119.96503 * 0.02562 * 14 13 12 43 43 H 1.07992 * 120.03608 * 180.02562 * 15 14 13 44 44 H 0.96996 * 120.00178 * 179.97438 * 21 20 18 45 45 H 1.07996 * 120.03745 * 179.72497 * 26 16 15 46 46 H 1.07997 * 119.96326 * 180.27708 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2176 0.0005 5 6 3.6459 1.1672 0.0006 6 6 4.1559 2.6098 0.0011 7 7 5.6209 2.6097 0.0023 8 6 6.3524 2.6096 1.2716 9 6 6.2957 2.6099 -1.1644 10 8 5.6886 2.6097 -2.2178 11 7 7.6434 2.6104 -1.1633 12 6 8.3770 2.6100 -2.4315 13 6 9.8583 2.6113 -2.1549 14 6 10.5375 1.4133 -2.0275 15 6 11.8952 1.4110 -1.7745 16 6 12.5784 2.6136 -1.6476 17 8 13.9130 2.6146 -1.3995 18 6 14.5369 1.4194 -1.4013 19 1 13.9635 0.5111 -1.5131 20 6 15.9148 1.3564 -1.2596 21 7 16.6134 2.4628 -1.1238 22 14 16.7793 -0.2995 -1.2629 23 1 16.5190 -0.9913 -2.5508 24 1 18.2409 -0.0953 -1.0977 25 1 16.2652 -1.1285 -0.1431 26 6 11.8924 3.8149 -1.7698 27 6 10.5358 3.8104 -2.0284 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 1.9501 -0.8400 0.0004 32 1 4.0096 0.6532 -0.8892 33 1 4.0089 0.6536 0.8908 34 1 3.7922 3.1234 0.8911 35 1 3.7929 3.1238 -0.8888 36 1 6.5338 3.6373 1.5865 37 1 5.7627 2.0957 2.0308 38 1 7.3049 2.0958 1.1420 39 1 8.1278 2.6109 -0.3229 40 1 8.1138 3.4997 -3.0036 41 1 8.1145 1.7197 -3.0028 42 1 10.0058 0.4785 -2.1267 43 1 12.4250 0.4752 -1.6755 44 1 17.5772 2.4187 -1.0243 45 1 12.4200 4.7516 -1.6672 46 1 10.0026 4.7443 -2.1280 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000732461040.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:38 Heat of formation + Delta-G solvation = -62.967193 kcal Electronic energy + Delta-G solvation = -27413.934827 eV Core-core repulsion = 23304.750631 eV Total energy + Delta-G solvation = -4109.184196 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.44371 -39.78875 -39.10330 -36.99624 -35.88637 -34.96676 -34.50002 -32.43670 -31.86182 -30.29515 -29.71500 -27.72859 -26.73425 -25.85095 -24.85942 -23.38438 -22.06643 -20.84760 -20.64253 -19.91333 -18.34187 -18.07547 -17.69857 -17.04460 -16.50140 -16.18554 -16.00329 -15.63367 -14.91242 -14.72412 -14.52985 -14.48386 -14.13537 -13.79466 -13.78351 -13.62380 -13.51069 -13.37001 -12.90361 -12.79897 -12.77679 -12.70011 -12.48972 -12.43923 -12.05365 -11.69502 -11.41612 -11.31564 -10.96125 -10.79806 -10.71662 -10.51562 -10.32368 -10.11902 -9.55485 -9.44878 -9.11444 -8.92523 -8.67220 -8.29974 -7.34706 -6.54354 -4.13432 2.00107 2.11524 2.28996 2.56216 2.96001 3.07283 3.09000 3.11545 3.21267 3.88842 3.96418 4.42745 4.51188 4.65396 4.71044 4.81227 4.88170 4.99843 5.07305 5.13577 5.16022 5.19402 5.24453 5.36814 5.42355 5.44115 5.48349 5.65759 5.76210 5.81349 5.92597 5.96923 6.10606 6.28279 6.34072 6.56485 6.60620 6.78695 6.82264 6.95749 7.02954 7.13815 7.26265 7.33565 7.69934 7.83014 7.90045 7.94085 8.58597 8.90758 9.58880 10.63015 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.023607 B = 0.001740 C = 0.001683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.824493 B =16091.986710 C =16631.309765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.739 5.739 3 C 0.518 3.482 4 O -0.539 6.539 5 C -0.158 4.158 6 C 0.151 3.849 7 N -0.637 5.637 8 C 0.077 3.923 9 C 0.701 3.299 10 O -0.593 6.593 11 N -0.737 5.737 12 C 0.196 3.804 13 C -0.214 4.214 14 C -0.050 4.050 15 C -0.238 4.238 16 C 0.160 3.840 17 O -0.173 6.173 18 C -0.394 4.394 19 H 0.093 0.907 20 C 0.041 3.959 21 N -0.859 5.859 22 Si 0.942 3.058 23 H -0.269 1.269 24 H -0.277 1.277 25 H -0.269 1.269 26 C -0.195 4.195 27 C -0.053 4.053 28 H 0.074 0.926 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.403 0.597 32 H 0.100 0.900 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.093 0.907 36 H 0.058 0.942 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.397 0.603 40 H 0.065 0.935 41 H 0.064 0.936 42 H 0.108 0.892 43 H 0.128 0.872 44 H 0.272 0.728 45 H 0.118 0.882 46 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.009 -5.934 5.671 25.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.391 5.391 3 C 0.304 3.696 4 O -0.415 6.415 5 C -0.200 4.200 6 C 0.027 3.973 7 N -0.375 5.375 8 C -0.066 4.066 9 C 0.403 3.597 10 O -0.471 6.471 11 N -0.393 5.393 12 C 0.073 3.927 13 C -0.216 4.216 14 C -0.069 4.069 15 C -0.257 4.257 16 C 0.106 3.894 17 O -0.076 6.076 18 C -0.470 4.470 19 H 0.110 0.890 20 C -0.164 4.164 21 N -0.493 5.493 22 Si 0.766 3.234 23 H -0.194 1.194 24 H -0.202 1.202 25 H -0.195 1.195 26 C -0.215 4.215 27 C -0.072 4.072 28 H 0.093 0.907 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.236 0.764 32 H 0.118 0.882 33 H 0.112 0.888 34 H 0.101 0.899 35 H 0.111 0.889 36 H 0.076 0.924 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.233 0.767 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.126 0.874 43 H 0.146 0.854 44 H 0.082 0.918 45 H 0.136 0.864 46 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -24.447 -4.901 4.959 25.421 hybrid contribution 0.969 -1.465 0.510 1.829 sum -23.478 -6.366 5.468 24.932 Atomic orbital electron populations 1.21539 0.79617 1.02206 1.02399 1.45848 1.07868 1.08881 1.76496 1.20642 0.90085 0.83564 0.75277 1.90724 1.70624 1.31203 1.48987 1.22079 0.91550 1.01362 1.04977 1.20952 0.77570 0.94192 1.04591 1.47058 1.06320 1.79063 1.05078 1.21756 0.97105 1.02098 0.85646 1.15985 0.82134 0.77930 0.83678 1.90911 1.67995 1.58293 1.29893 1.45671 1.04056 1.78997 1.10581 1.19837 0.87168 1.01735 0.83914 1.19226 0.93878 0.93674 1.14808 1.20639 0.93626 0.96438 0.96205 1.21156 0.94677 0.98470 1.11398 1.19442 0.85356 0.93317 0.91313 1.83977 1.14982 1.33145 1.75471 1.21306 0.90267 0.83051 1.52419 0.88973 1.25316 0.95384 0.99374 0.96349 1.70023 1.07568 1.27103 1.44613 0.85767 0.78368 0.80005 0.79227 1.19425 1.20201 1.19456 1.20217 0.94067 0.96312 1.10874 1.20548 0.93157 0.96639 0.96884 0.90684 0.92217 0.92166 0.76374 0.88176 0.88822 0.89879 0.88903 0.92374 0.90909 0.91150 0.76671 0.91691 0.91778 0.87422 0.85444 0.91817 0.86373 0.86927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.46 10.70 59.85 0.64 1.10 16 2 N -0.74 -4.54 5.71 -67.07 -0.38 -4.92 16 3 C 0.52 4.76 7.83 -10.98 -0.09 4.67 16 4 O -0.54 -7.06 15.98 5.55 0.09 -6.97 16 5 C -0.16 -1.24 6.02 -27.88 -0.17 -1.40 16 6 C 0.15 1.50 4.70 -4.04 -0.02 1.48 16 7 N -0.64 -6.53 2.87 -187.35 -0.54 -7.07 16 8 C 0.08 0.54 10.20 59.85 0.61 1.15 16 9 C 0.70 9.56 8.28 -86.92 -0.72 8.84 16 10 O -0.59 -10.28 15.92 5.29 0.08 -10.19 16 11 N -0.74 -9.31 5.41 -66.42 -0.36 -9.67 16 12 C 0.20 2.76 5.80 -5.19 -0.03 2.73 16 13 C -0.21 -3.38 5.25 -104.58 -0.55 -3.93 16 14 C -0.05 -0.85 9.69 -39.61 -0.38 -1.23 16 15 C -0.24 -4.82 9.17 -39.39 -0.36 -5.18 16 16 C 0.16 3.67 6.65 -39.11 -0.26 3.41 16 17 O -0.17 -4.75 9.76 0.05 0.00 -4.75 16 18 C -0.39 -10.60 9.49 30.89 0.29 -10.31 16 19 H 0.09 2.27 5.20 -52.49 -0.27 2.00 16 20 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 21 N -0.86 -24.43 13.67 55.48 0.76 -23.68 16 22 Si 0.94 19.78 29.55 -169.99 -5.02 14.76 16 23 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 24 H -0.28 -5.71 7.11 56.52 0.40 -5.30 16 25 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 26 C -0.20 -3.88 9.99 -39.39 -0.39 -4.27 16 27 C -0.05 -0.89 9.69 -39.61 -0.38 -1.27 16 28 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.40 1.33 8.83 -40.82 -0.36 0.97 16 32 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.08 0.73 8.03 -51.93 -0.42 0.31 16 35 H 0.09 1.19 7.38 -51.93 -0.38 0.80 16 36 H 0.06 0.38 8.14 -51.92 -0.42 -0.04 16 37 H 0.07 0.36 8.07 -51.93 -0.42 -0.06 16 38 H 0.07 0.47 6.36 -51.93 -0.33 0.14 16 39 H 0.40 4.42 6.20 -40.82 -0.25 4.17 16 40 H 0.06 0.94 8.08 -51.93 -0.42 0.52 16 41 H 0.06 0.92 8.08 -51.93 -0.42 0.50 16 42 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 43 H 0.13 2.60 5.64 -52.49 -0.30 2.30 16 44 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 45 H 0.12 2.28 8.06 -52.49 -0.42 1.86 16 46 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 LS Contribution 392.38 15.07 5.91 5.91 Total: -1.00 -34.65 392.38 -7.88 -42.53 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -6.51 Total: 7.29 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: -1.91 Total: -3.24 kcal Atomic # 7 Polarization: -44.82 SS G_CDS: -0.52 Total: -45.34 kcal Atomic # 8 Polarization: -22.09 SS G_CDS: 0.17 Total: -21.91 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.02 Total: 14.76 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.65 -7.88 -42.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732461040.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.441 kcal (2) G-P(sol) polarization free energy of solvation -34.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds