Wall clock time and date at job start Tue Mar 31 2020 18:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34773 * 119.99617 * 2 1 4 4 O 1.21286 * 120.00566 * 0.02562 * 3 2 1 5 5 C 1.50709 * 119.99657 * 179.97438 * 3 2 1 6 6 C 1.53006 * 109.46894 * 180.02562 * 5 3 2 7 7 N 1.46501 * 109.46475 * 179.97438 * 6 5 3 8 8 C 1.46499 * 120.00091 * 269.99903 * 7 6 5 9 9 C 1.34778 * 119.99866 * 90.00876 * 7 6 5 10 10 O 1.21584 * 119.99654 * 359.97438 * 9 7 6 11 11 N 1.34769 * 119.99808 * 179.97438 * 9 7 6 12 12 C 1.46508 * 120.00011 * 179.97438 * 11 9 7 13 13 C 1.50695 * 109.47103 * 179.97438 * 12 11 9 14 14 C 1.38299 * 119.93247 * 90.00118 * 13 12 11 15 15 C 1.38101 * 120.07425 * 179.97438 * 14 13 12 16 16 C 1.38886 * 119.92536 * 0.02562 * 15 14 13 17 17 O 1.35750 * 120.06440 * 180.02562 * 16 15 14 18 18 C 1.34828 * 117.00075 * 5.53777 * 17 16 15 19 19 H 1.07993 * 120.00518 * 354.94289 * 18 17 16 20 20 C 1.38663 * 119.99751 * 174.94575 * 18 17 16 21 21 N 1.31556 * 120.00220 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 119.99821 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47517 * 59.99414 * 22 20 18 24 24 H 1.48505 * 109.47332 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.46989 * 299.99567 * 22 20 18 26 26 C 1.38874 * 119.86623 * 0.27854 * 16 15 14 27 27 C 1.38106 * 119.92542 * 359.44577 * 26 16 15 28 28 H 1.09000 * 109.46890 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47323 * 299.99946 * 1 2 3 30 30 H 1.08999 * 109.46500 * 60.00044 * 1 2 3 31 31 H 0.96996 * 120.00174 * 179.97438 * 2 1 3 32 32 H 1.08999 * 109.47044 * 60.00267 * 5 3 2 33 33 H 1.08999 * 109.46739 * 300.00193 * 5 3 2 34 34 H 1.08999 * 109.47071 * 60.00266 * 6 5 3 35 35 H 1.08990 * 109.47112 * 300.00026 * 6 5 3 36 36 H 1.09008 * 109.47115 * 270.00402 * 8 7 6 37 37 H 1.09004 * 109.47392 * 30.00446 * 8 7 6 38 38 H 1.08993 * 109.47095 * 150.00535 * 8 7 6 39 39 H 0.97001 * 120.00514 * 359.97438 * 11 9 7 40 40 H 1.08998 * 109.46632 * 59.99915 * 12 11 9 41 41 H 1.08996 * 109.47144 * 299.99646 * 12 11 9 42 42 H 1.07999 * 119.96503 * 0.02562 * 14 13 12 43 43 H 1.07992 * 120.03608 * 180.02562 * 15 14 13 44 44 H 0.96996 * 120.00178 * 179.97438 * 21 20 18 45 45 H 1.07996 * 120.03745 * 179.72497 * 26 16 15 46 46 H 1.07997 * 119.96326 * 180.27708 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2176 0.0005 5 6 3.6459 1.1672 0.0006 6 6 4.1559 2.6098 0.0011 7 7 5.6209 2.6097 0.0023 8 6 6.3524 2.6096 1.2716 9 6 6.2957 2.6099 -1.1644 10 8 5.6886 2.6097 -2.2178 11 7 7.6434 2.6104 -1.1633 12 6 8.3770 2.6100 -2.4315 13 6 9.8583 2.6113 -2.1549 14 6 10.5375 1.4133 -2.0275 15 6 11.8952 1.4110 -1.7745 16 6 12.5784 2.6136 -1.6476 17 8 13.9130 2.6146 -1.3995 18 6 14.5369 1.4194 -1.4013 19 1 13.9635 0.5111 -1.5131 20 6 15.9148 1.3564 -1.2596 21 7 16.6134 2.4628 -1.1238 22 14 16.7793 -0.2995 -1.2629 23 1 16.5190 -0.9913 -2.5508 24 1 18.2409 -0.0953 -1.0977 25 1 16.2652 -1.1285 -0.1431 26 6 11.8924 3.8149 -1.7698 27 6 10.5358 3.8104 -2.0284 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 1.9501 -0.8400 0.0004 32 1 4.0096 0.6532 -0.8892 33 1 4.0089 0.6536 0.8908 34 1 3.7922 3.1234 0.8911 35 1 3.7929 3.1238 -0.8888 36 1 6.5338 3.6373 1.5865 37 1 5.7627 2.0957 2.0308 38 1 7.3049 2.0958 1.1420 39 1 8.1278 2.6109 -0.3229 40 1 8.1138 3.4997 -3.0036 41 1 8.1145 1.7197 -3.0028 42 1 10.0058 0.4785 -2.1267 43 1 12.4250 0.4752 -1.6755 44 1 17.5772 2.4187 -1.0243 45 1 12.4200 4.7516 -1.6672 46 1 10.0026 4.7443 -2.1280 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000732461040.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:37 Heat of formation + Delta-G solvation = -88.391188 kcal Electronic energy + Delta-G solvation = -27415.037294 eV Core-core repulsion = 23304.750631 eV Total energy + Delta-G solvation = -4110.286664 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.40211 -40.80542 -40.50071 -38.56105 -36.83193 -35.73776 -35.59705 -34.27707 -32.73399 -31.81791 -31.04552 -28.33079 -27.78671 -27.25225 -26.15898 -24.28183 -23.62973 -22.15200 -21.50704 -20.90038 -19.86392 -19.27096 -18.76259 -18.38598 -17.37224 -17.03250 -16.72291 -16.62727 -16.36310 -16.22776 -15.94494 -15.58703 -15.34855 -15.20898 -14.93197 -14.66492 -14.40800 -14.37304 -14.27019 -14.00644 -13.62585 -13.58094 -13.30798 -13.21221 -13.13984 -13.00340 -12.96803 -12.51304 -12.36267 -12.21931 -12.12366 -12.06013 -11.31474 -11.19012 -11.04000 -10.78545 -10.18976 -10.14007 -9.79963 -9.53368 -9.00699 -8.46818 -6.15155 0.53924 0.59241 1.36996 1.46218 1.52824 1.59656 1.67822 2.11635 2.18369 2.38837 2.78897 3.06579 3.25623 3.50538 3.81365 3.88807 4.01724 4.04642 4.06082 4.19121 4.30712 4.46828 4.48327 4.54854 4.58454 4.61114 4.65799 4.71616 4.81831 4.82971 4.93401 4.94963 5.00870 5.05719 5.15717 5.28300 5.43535 5.47096 5.51698 5.55433 5.70283 5.77218 5.93195 6.02530 6.17413 6.51612 6.97401 6.98011 7.23070 7.56117 7.77163 8.75648 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.023607 B = 0.001740 C = 0.001683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.824493 B =16091.986710 C =16631.309765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.726 5.726 3 C 0.513 3.487 4 O -0.586 6.586 5 C -0.146 4.146 6 C 0.151 3.849 7 N -0.630 5.630 8 C 0.071 3.929 9 C 0.698 3.302 10 O -0.634 6.634 11 N -0.729 5.729 12 C 0.203 3.797 13 C -0.181 4.181 14 C -0.043 4.043 15 C -0.243 4.243 16 C 0.123 3.877 17 O -0.229 6.229 18 C -0.414 4.414 19 H 0.105 0.895 20 C -0.021 4.021 21 N -0.919 5.919 22 Si 1.017 2.983 23 H -0.258 1.258 24 H -0.274 1.274 25 H -0.255 1.255 26 C -0.205 4.205 27 C -0.044 4.044 28 H 0.109 0.891 29 H 0.052 0.948 30 H 0.045 0.955 31 H 0.419 0.581 32 H 0.094 0.906 33 H 0.126 0.874 34 H 0.096 0.904 35 H 0.057 0.943 36 H 0.064 0.936 37 H 0.099 0.901 38 H 0.076 0.924 39 H 0.407 0.593 40 H 0.066 0.934 41 H 0.069 0.931 42 H 0.141 0.859 43 H 0.122 0.878 44 H 0.273 0.727 45 H 0.114 0.886 46 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.392 -8.165 6.443 28.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.378 5.378 3 C 0.300 3.700 4 O -0.466 6.466 5 C -0.187 4.187 6 C 0.027 3.973 7 N -0.366 5.366 8 C -0.071 4.071 9 C 0.400 3.600 10 O -0.515 6.515 11 N -0.386 5.386 12 C 0.079 3.921 13 C -0.183 4.183 14 C -0.061 4.061 15 C -0.262 4.262 16 C 0.072 3.928 17 O -0.136 6.136 18 C -0.490 4.490 19 H 0.122 0.878 20 C -0.219 4.219 21 N -0.556 5.556 22 Si 0.837 3.163 23 H -0.183 1.183 24 H -0.198 1.198 25 H -0.180 1.180 26 C -0.224 4.224 27 C -0.062 4.062 28 H 0.128 0.872 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.255 0.745 32 H 0.112 0.888 33 H 0.144 0.856 34 H 0.114 0.886 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.118 0.882 38 H 0.095 0.905 39 H 0.245 0.755 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.159 0.841 43 H 0.140 0.860 44 H 0.082 0.918 45 H 0.132 0.868 46 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -26.891 -7.176 5.770 28.424 hybrid contribution 1.271 -0.688 0.240 1.465 sum -25.620 -7.864 6.010 27.465 Atomic orbital electron populations 1.21662 0.79004 1.04156 1.01336 1.45797 1.08398 1.08811 1.74763 1.20910 0.90684 0.83640 0.74733 1.90708 1.71525 1.32955 1.51457 1.21959 0.90544 1.00016 1.06172 1.20923 0.77338 0.95539 1.03496 1.47066 1.06448 1.77823 1.05270 1.22012 0.97500 1.03083 0.84514 1.16102 0.82144 0.77772 0.84015 1.90891 1.68757 1.60143 1.31747 1.45397 1.03855 1.78961 1.10420 1.19713 0.85494 1.02228 0.84657 1.19480 0.94875 0.92955 1.10960 1.20935 0.92193 0.98340 0.94674 1.21250 0.96088 0.97346 1.11535 1.19990 0.84520 0.95380 0.92911 1.83948 1.17183 1.33666 1.78755 1.21803 0.91023 0.83639 1.52569 0.87806 1.26577 0.95925 1.03610 0.95803 1.70173 1.07794 1.29853 1.47807 0.84663 0.76902 0.74864 0.79918 1.18285 1.19849 1.17962 1.20432 0.95429 0.95433 1.11096 1.20870 0.91746 0.98500 0.95099 0.87222 0.92922 0.93653 0.74462 0.88753 0.85572 0.88616 0.92421 0.91753 0.88228 0.90549 0.75534 0.91532 0.91265 0.84146 0.86042 0.91842 0.86768 0.83765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.74 10.70 127.77 1.37 2.11 16 2 N -0.73 -7.40 5.71 -484.50 -2.77 -10.17 16 3 C 0.51 8.74 7.83 87.66 0.69 9.43 16 4 O -0.59 -15.30 15.98 -3.05 -0.05 -15.35 16 5 C -0.15 -1.95 6.02 29.85 0.18 -1.77 16 6 C 0.15 2.76 4.70 86.38 0.41 3.17 16 7 N -0.63 -11.27 2.87 -864.92 -2.48 -13.76 16 8 C 0.07 0.73 10.20 127.77 1.30 2.03 16 9 C 0.70 17.38 8.28 179.06 1.48 18.86 16 10 O -0.63 -21.14 15.92 -3.98 -0.06 -21.21 16 11 N -0.73 -16.00 5.41 -482.31 -2.61 -18.61 16 12 C 0.20 4.97 5.80 85.63 0.50 5.47 16 13 C -0.18 -5.12 5.25 -19.84 -0.10 -5.23 16 14 C -0.04 -1.32 9.69 22.25 0.22 -1.11 16 15 C -0.24 -9.72 9.17 22.39 0.21 -9.51 16 16 C 0.12 5.76 6.65 22.58 0.15 5.91 16 17 O -0.23 -13.27 9.76 -22.72 -0.22 -13.49 16 18 C -0.41 -23.19 9.49 67.92 0.64 -22.55 16 19 H 0.10 5.26 5.20 -2.91 -0.02 5.25 16 20 C -0.02 -1.17 5.49 84.84 0.47 -0.70 16 21 N -0.92 -54.99 13.67 21.62 0.30 -54.69 16 22 Si 1.02 41.30 29.55 68.60 2.03 43.33 16 23 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 24 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 25 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 26 C -0.20 -8.12 9.99 22.39 0.22 -7.89 16 27 C -0.04 -1.34 9.69 22.25 0.22 -1.13 16 28 H 0.11 0.21 8.14 -2.39 -0.02 0.19 16 29 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.42 1.51 8.83 -92.71 -0.82 0.69 16 32 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.13 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.10 1.50 8.03 -2.39 -0.02 1.49 16 35 H 0.06 1.49 7.38 -2.39 -0.02 1.47 16 36 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 37 H 0.10 0.54 8.07 -2.38 -0.02 0.52 16 38 H 0.08 0.72 6.36 -2.39 -0.02 0.71 16 39 H 0.41 7.50 6.20 -92.71 -0.57 6.93 16 40 H 0.07 1.69 8.08 -2.39 -0.02 1.67 16 41 H 0.07 1.71 8.08 -2.39 -0.02 1.69 16 42 H 0.14 3.47 8.06 -2.91 -0.02 3.45 16 43 H 0.12 4.95 5.64 -2.91 -0.02 4.93 16 44 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 45 H 0.11 4.53 8.06 -2.91 -0.02 4.51 16 46 H 0.14 3.58 8.06 -2.91 -0.02 3.55 16 Total: -1.00 -81.51 392.38 1.69 -79.82 By element: Atomic # 1 Polarization: 27.41 SS G_CDS: -0.37 Total: 27.04 kcal Atomic # 6 Polarization: -10.84 SS G_CDS: 7.94 Total: -2.90 kcal Atomic # 7 Polarization: -89.66 SS G_CDS: -7.57 Total: -97.23 kcal Atomic # 8 Polarization: -49.71 SS G_CDS: -0.33 Total: -50.05 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 2.03 Total: 43.33 kcal Total: -81.51 1.69 -79.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732461040.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.570 kcal (2) G-P(sol) polarization free energy of solvation -81.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds