Wall clock time and date at job start Tue Mar 31 2020 18:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46891 * 1 3 3 C 1.46905 * 111.00213 * 2 1 4 4 C 1.46904 * 111.00445 * 123.95412 * 2 1 3 5 5 C 1.53003 * 109.46645 * 66.04564 * 4 2 1 6 6 C 1.53002 * 109.46884 * 180.02562 * 5 4 2 7 7 N 1.46494 * 109.47179 * 179.97438 * 6 5 4 8 8 C 1.46497 * 120.00154 * 269.99697 * 7 6 5 9 9 C 1.50696 * 109.47443 * 264.95841 * 8 7 6 10 10 H 1.08002 * 120.00016 * 359.97438 * 9 8 7 11 11 C 1.37877 * 120.00127 * 180.02562 * 9 8 7 12 12 N 1.31521 * 119.99702 * 180.02562 * 11 9 8 13 13 Si 1.86797 * 120.00114 * 359.97438 * 11 9 8 14 14 H 1.48496 * 109.47122 * 90.00223 * 13 11 9 15 15 H 1.48508 * 109.47019 * 210.00003 * 13 11 9 16 16 H 1.48497 * 109.47081 * 329.99902 * 13 11 9 17 17 C 1.34779 * 119.99974 * 89.99690 * 7 6 5 18 18 O 1.21485 * 120.00182 * 354.61248 * 17 7 6 19 19 C 1.48349 * 119.99889 * 174.88440 * 17 7 6 20 20 C 1.39298 * 119.56495 * 173.21379 * 19 17 7 21 21 C 1.38449 * 119.19509 * 179.97438 * 20 19 17 22 22 C 1.39906 * 118.35331 * 0.02562 * 21 20 19 23 23 C 1.47894 * 120.46992 * 179.97438 * 22 21 20 24 24 O 1.21445 * 120.00012 * 359.97438 * 23 22 21 25 25 O 1.34691 * 120.00077 * 179.97438 * 23 22 21 26 26 C 1.39775 * 119.06713 * 359.97438 * 22 21 20 27 27 N 1.31418 * 120.71068 * 359.75124 * 26 22 21 28 28 H 1.09008 * 109.46988 * 296.04484 * 1 2 3 29 29 H 1.08999 * 109.47293 * 56.04670 * 1 2 3 30 30 H 1.09005 * 109.47353 * 176.04713 * 1 2 3 31 31 H 1.09004 * 109.47360 * 183.95249 * 3 2 1 32 32 H 1.09000 * 109.46691 * 303.95711 * 3 2 1 33 33 H 1.08996 * 109.46948 * 63.95521 * 3 2 1 34 34 H 1.09002 * 109.46719 * 306.04766 * 4 2 1 35 35 H 1.08997 * 109.47195 * 186.04474 * 4 2 1 36 36 H 1.08988 * 109.47446 * 60.00492 * 5 4 2 37 37 H 1.08997 * 109.47250 * 299.99876 * 5 4 2 38 38 H 1.09004 * 109.47495 * 59.99670 * 6 5 4 39 39 H 1.09004 * 109.47045 * 299.99753 * 6 5 4 40 40 H 1.09003 * 109.47513 * 24.96177 * 8 7 6 41 41 H 1.09003 * 109.47547 * 144.95851 * 8 7 6 42 42 H 0.97000 * 119.99663 * 180.02562 * 12 11 9 43 43 H 1.07997 * 120.40558 * 359.95623 * 20 19 17 44 44 H 1.07997 * 120.82238 * 180.02562 * 21 20 19 45 45 H 0.96708 * 117.00128 * 179.97438 * 25 23 22 46 46 H 1.08001 * 119.65133 * 179.97438 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 1.6315 -2.2426 0.9702 6 6 2.1793 -3.0404 2.1553 7 7 1.8303 -4.4541 1.9955 8 6 0.5734 -4.9653 2.5478 9 6 0.8266 -5.5543 3.9115 10 1 1.8242 -5.5489 4.3253 11 6 -0.2150 -6.1012 4.6305 12 7 0.0060 -6.6148 5.8210 13 14 -1.9403 -6.1113 3.9145 14 1 -2.1472 -7.3608 3.1392 15 1 -2.9338 -6.0420 5.0162 16 1 -2.1115 -4.9390 3.0192 17 6 2.6656 -5.2845 1.3403 18 8 3.6591 -4.8433 0.7981 19 6 2.3685 -6.7366 1.2762 20 6 3.1567 -7.5649 0.4805 21 6 2.8729 -8.9189 0.4267 22 6 1.7974 -9.4028 1.1794 23 6 1.4526 -10.8408 1.1561 24 8 2.1044 -11.6107 0.4799 25 8 0.4155 -11.2965 1.8848 26 6 1.0534 -8.5081 1.9538 27 7 1.3586 -7.2301 1.9819 28 1 -0.3633 0.4513 0.9234 29 1 -0.3634 0.5740 -0.8524 30 1 -0.3634 -1.0252 -0.0708 31 1 3.0828 1.3433 -0.0708 32 1 1.5897 1.9163 -0.8524 33 1 1.7044 1.8723 0.9233 34 1 1.5611 -0.3872 2.0628 35 1 3.0797 -0.6611 1.1755 36 1 2.0658 -2.6213 0.0451 37 1 0.5472 -2.3475 0.9323 38 1 1.7447 -2.6615 3.0804 39 1 3.2636 -2.9355 2.1937 40 1 -0.1449 -4.1497 2.6319 41 1 0.1731 -5.7352 1.8881 42 1 -0.7267 -6.9999 6.3266 43 1 3.9789 -7.1558 -0.0878 44 1 3.4671 -9.5851 -0.1812 45 1 0.2282 -12.2441 1.8372 46 1 0.2210 -8.8714 2.5381 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000737370740.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:55 Heat of formation + Delta-G solvation = -58.090813 kcal Electronic energy + Delta-G solvation = -29244.226502 eV Core-core repulsion = 25135.253761 eV Total energy + Delta-G solvation = -4108.972741 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.71960 -39.80323 -38.50382 -37.59343 -36.14608 -35.46864 -33.02731 -32.34762 -31.66719 -31.16137 -27.97545 -27.64867 -26.68929 -25.10943 -23.39550 -22.81706 -22.58050 -21.51844 -20.73805 -19.28113 -18.28393 -17.34852 -16.96349 -16.78642 -16.38177 -15.68324 -15.61429 -15.54727 -15.05109 -14.79666 -14.62225 -14.42452 -14.17695 -13.95477 -13.60634 -13.21392 -13.16620 -13.08679 -12.54534 -12.48048 -12.32085 -12.21706 -11.87667 -11.71425 -11.69235 -11.62094 -11.31996 -11.23852 -10.88217 -10.82755 -10.69318 -10.30849 -10.20449 -9.77331 -9.74448 -9.49188 -9.06843 -8.63975 -8.52268 -8.41267 -7.82216 -6.08046 -3.99970 0.39258 1.43861 2.39556 2.94234 3.23479 3.26307 3.31403 3.33033 3.53089 3.95746 4.19773 4.38009 4.54561 4.89163 4.94043 4.97521 5.01981 5.08092 5.21684 5.24206 5.28593 5.31598 5.37772 5.47730 5.57233 5.59008 5.68549 5.73537 5.79126 5.91329 5.93170 6.04576 6.06453 6.13122 6.35281 6.38616 6.47470 6.53980 6.64580 6.96256 6.97860 6.99464 7.32400 7.60305 7.81355 8.00686 8.13641 8.47889 8.72359 8.94882 9.52827 11.05365 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011306 B = 0.003658 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2475.993398 B = 7652.815831 C = 9285.170406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.549 5.549 3 C 0.025 3.975 4 C 0.058 3.942 5 C -0.130 4.130 6 C 0.120 3.880 7 N -0.566 5.566 8 C 0.208 3.792 9 C -0.488 4.488 10 H 0.071 0.929 11 C 0.077 3.923 12 N -0.899 5.899 13 Si 0.867 3.133 14 H -0.273 1.273 15 H -0.289 1.289 16 H -0.268 1.268 17 C 0.565 3.435 18 O -0.556 6.556 19 C 0.116 3.884 20 C -0.133 4.133 21 C -0.030 4.030 22 C -0.176 4.176 23 C 0.537 3.463 24 O -0.519 6.519 25 O -0.505 6.505 26 C 0.154 3.846 27 N -0.389 5.389 28 H 0.025 0.975 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.023 0.977 34 H 0.036 0.964 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.063 0.937 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.024 0.976 41 H 0.056 0.944 42 H 0.262 0.738 43 H 0.152 0.848 44 H 0.148 0.852 45 H 0.414 0.586 46 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.165 2.987 -10.033 10.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.272 5.272 3 C -0.123 4.123 4 C -0.070 4.070 5 C -0.169 4.169 6 C -0.004 4.004 7 N -0.294 5.294 8 C 0.088 3.912 9 C -0.527 4.527 10 H 0.089 0.911 11 C -0.125 4.125 12 N -0.539 5.539 13 Si 0.694 3.306 14 H -0.199 1.199 15 H -0.215 1.215 16 H -0.193 1.193 17 C 0.351 3.649 18 O -0.436 6.436 19 C -0.022 4.022 20 C -0.154 4.154 21 C -0.056 4.056 22 C -0.179 4.179 23 C 0.381 3.619 24 O -0.409 6.409 25 O -0.316 6.316 26 C -0.006 4.006 27 N -0.099 5.099 28 H 0.044 0.956 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.042 0.958 34 H 0.054 0.946 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.082 0.918 38 H 0.100 0.900 39 H 0.095 0.905 40 H 0.042 0.958 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.169 0.831 44 H 0.166 0.834 45 H 0.272 0.728 46 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 0.493 3.745 -10.214 10.890 hybrid contribution -0.997 -1.064 0.220 1.474 sum -0.503 2.681 -9.994 10.359 Atomic orbital electron populations 1.22441 0.87475 1.02669 1.00158 1.61968 1.08049 1.13506 1.43722 1.22368 1.00779 0.88969 1.00218 1.22078 1.00231 0.93719 0.90958 1.21954 1.01457 0.93444 1.00028 1.21347 1.00946 0.80321 0.97745 1.47879 1.21765 1.07912 1.51828 1.20241 0.80381 0.94574 0.96035 1.21077 0.96730 1.36774 0.98111 0.91096 1.24691 0.98214 0.94969 0.94581 1.69899 1.32126 1.39994 1.11864 0.87018 0.85344 0.79194 0.78996 1.19871 1.21532 1.19291 1.17866 0.83051 0.84701 0.79279 1.90702 1.28518 1.76797 1.47614 1.21642 0.92467 0.95352 0.92737 1.22031 1.00814 0.92772 0.99786 1.21545 0.93788 0.95210 0.95030 1.20303 1.01371 0.91047 1.05228 1.20744 0.76910 0.88800 0.75408 1.90858 1.51254 1.58096 1.40708 1.84612 1.48572 1.33053 1.65413 1.23500 0.96710 0.88160 0.92193 1.68945 1.13750 1.13239 1.14006 0.95632 0.91734 0.90859 0.91374 0.91617 0.95793 0.94582 0.90577 0.90746 0.91788 0.90019 0.90527 0.95794 0.92676 0.92755 0.83053 0.83386 0.72759 0.81209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.32 60.06 0.56 0.79 16 2 N -0.55 -6.64 5.02 -251.25 -1.26 -7.90 16 3 C 0.03 0.24 9.57 60.07 0.57 0.82 16 4 C 0.06 0.74 4.96 -3.82 -0.02 0.72 16 5 C -0.13 -1.91 5.46 -26.73 -0.15 -2.06 16 6 C 0.12 2.03 5.34 -4.04 -0.02 2.01 16 7 N -0.57 -11.28 2.47 -175.99 -0.43 -11.71 16 8 C 0.21 4.52 3.81 -5.20 -0.02 4.50 16 9 C -0.49 -12.40 7.97 -34.44 -0.27 -12.68 16 10 H 0.07 2.06 8.06 -52.49 -0.42 1.64 16 11 C 0.08 2.01 5.47 -17.82 -0.10 1.92 16 12 N -0.90 -25.55 13.96 55.43 0.77 -24.78 16 13 Si 0.87 19.65 27.47 -169.99 -4.67 14.98 16 14 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 15 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 16 H -0.27 -5.82 6.54 56.52 0.37 -5.45 16 17 C 0.56 11.39 7.61 -12.10 -0.09 11.30 16 18 O -0.56 -11.63 15.97 5.38 0.09 -11.54 16 19 C 0.12 2.20 6.56 -82.93 -0.54 1.66 16 20 C -0.13 -2.09 9.62 -39.11 -0.38 -2.46 16 21 C -0.03 -0.43 9.71 -38.88 -0.38 -0.81 16 22 C -0.18 -2.70 5.89 -104.75 -0.62 -3.32 16 23 C 0.54 7.59 8.28 34.68 0.29 7.88 16 24 O -0.52 -8.14 17.20 -19.22 -0.33 -8.47 16 25 O -0.51 -5.84 12.70 -40.47 -0.51 -6.35 16 26 C 0.15 2.72 10.78 -17.15 -0.18 2.53 16 27 N -0.39 -7.78 4.76 -9.46 -0.05 -7.83 16 28 H 0.03 0.27 8.14 -51.92 -0.42 -0.15 16 29 H 0.06 0.61 8.12 -51.93 -0.42 0.19 16 30 H 0.07 0.85 6.47 -51.93 -0.34 0.51 16 31 H 0.07 0.62 8.12 -51.93 -0.42 0.20 16 32 H 0.07 0.56 8.12 -51.93 -0.42 0.14 16 33 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 34 H 0.04 0.44 8.12 -51.93 -0.42 0.02 16 35 H 0.08 0.92 8.06 -51.93 -0.42 0.51 16 36 H 0.07 1.21 8.14 -51.94 -0.42 0.79 16 37 H 0.06 0.95 6.55 -51.93 -0.34 0.61 16 38 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 39 H 0.08 1.30 7.50 -51.93 -0.39 0.91 16 40 H 0.02 0.52 7.09 -51.93 -0.37 0.15 16 41 H 0.06 1.21 5.17 -51.93 -0.27 0.94 16 42 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 43 H 0.15 2.14 7.64 -52.49 -0.40 1.74 16 44 H 0.15 1.79 7.73 -52.49 -0.41 1.38 16 45 H 0.41 2.62 9.11 45.56 0.42 3.04 16 46 H 0.17 2.96 7.62 -52.49 -0.40 2.56 16 LS Contribution 384.95 15.07 5.80 5.80 Total: -1.00 -31.83 384.95 -7.82 -39.65 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -5.88 Total: 5.35 kcal Atomic # 6 Polarization: 14.15 SS G_CDS: -1.35 Total: 12.80 kcal Atomic # 7 Polarization: -51.24 SS G_CDS: -0.97 Total: -52.21 kcal Atomic # 8 Polarization: -25.61 SS G_CDS: -0.76 Total: -26.36 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -4.67 Total: 14.98 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.83 -7.82 -39.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737370740.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.438 kcal (2) G-P(sol) polarization free energy of solvation -31.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds