Wall clock time and date at job start Tue Mar 31 2020 18:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46891 * 1 3 3 C 1.46905 * 111.00213 * 2 1 4 4 C 1.46904 * 111.00445 * 123.95412 * 2 1 3 5 5 C 1.53003 * 109.46645 * 66.04564 * 4 2 1 6 6 C 1.53002 * 109.46884 * 180.02562 * 5 4 2 7 7 N 1.46494 * 109.47179 * 179.97438 * 6 5 4 8 8 C 1.46497 * 120.00154 * 269.99697 * 7 6 5 9 9 C 1.50696 * 109.47443 * 264.95841 * 8 7 6 10 10 H 1.08002 * 120.00016 * 359.97438 * 9 8 7 11 11 C 1.37877 * 120.00127 * 180.02562 * 9 8 7 12 12 N 1.31521 * 119.99702 * 180.02562 * 11 9 8 13 13 Si 1.86797 * 120.00114 * 359.97438 * 11 9 8 14 14 H 1.48496 * 109.47122 * 90.00223 * 13 11 9 15 15 H 1.48508 * 109.47019 * 210.00003 * 13 11 9 16 16 H 1.48497 * 109.47081 * 329.99902 * 13 11 9 17 17 C 1.34779 * 119.99974 * 89.99690 * 7 6 5 18 18 O 1.21485 * 120.00182 * 354.61248 * 17 7 6 19 19 C 1.48349 * 119.99889 * 174.88440 * 17 7 6 20 20 C 1.39298 * 119.56495 * 173.21379 * 19 17 7 21 21 C 1.38449 * 119.19509 * 179.97438 * 20 19 17 22 22 C 1.39906 * 118.35331 * 0.02562 * 21 20 19 23 23 C 1.47894 * 120.46992 * 179.97438 * 22 21 20 24 24 O 1.21445 * 120.00012 * 359.97438 * 23 22 21 25 25 O 1.34691 * 120.00077 * 179.97438 * 23 22 21 26 26 C 1.39775 * 119.06713 * 359.97438 * 22 21 20 27 27 N 1.31418 * 120.71068 * 359.75124 * 26 22 21 28 28 H 1.09008 * 109.46988 * 296.04484 * 1 2 3 29 29 H 1.08999 * 109.47293 * 56.04670 * 1 2 3 30 30 H 1.09005 * 109.47353 * 176.04713 * 1 2 3 31 31 H 1.09004 * 109.47360 * 183.95249 * 3 2 1 32 32 H 1.09000 * 109.46691 * 303.95711 * 3 2 1 33 33 H 1.08996 * 109.46948 * 63.95521 * 3 2 1 34 34 H 1.09002 * 109.46719 * 306.04766 * 4 2 1 35 35 H 1.08997 * 109.47195 * 186.04474 * 4 2 1 36 36 H 1.08988 * 109.47446 * 60.00492 * 5 4 2 37 37 H 1.08997 * 109.47250 * 299.99876 * 5 4 2 38 38 H 1.09004 * 109.47495 * 59.99670 * 6 5 4 39 39 H 1.09004 * 109.47045 * 299.99753 * 6 5 4 40 40 H 1.09003 * 109.47513 * 24.96177 * 8 7 6 41 41 H 1.09003 * 109.47547 * 144.95851 * 8 7 6 42 42 H 0.97000 * 119.99663 * 180.02562 * 12 11 9 43 43 H 1.07997 * 120.40558 * 359.95623 * 20 19 17 44 44 H 1.07997 * 120.82238 * 180.02562 * 21 20 19 45 45 H 0.96708 * 117.00128 * 179.97438 * 25 23 22 46 46 H 1.08001 * 119.65133 * 179.97438 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 1.6315 -2.2426 0.9702 6 6 2.1793 -3.0404 2.1553 7 7 1.8303 -4.4541 1.9955 8 6 0.5734 -4.9653 2.5478 9 6 0.8266 -5.5543 3.9115 10 1 1.8242 -5.5489 4.3253 11 6 -0.2150 -6.1012 4.6305 12 7 0.0060 -6.6148 5.8210 13 14 -1.9403 -6.1113 3.9145 14 1 -2.1472 -7.3608 3.1392 15 1 -2.9338 -6.0420 5.0162 16 1 -2.1115 -4.9390 3.0192 17 6 2.6656 -5.2845 1.3403 18 8 3.6591 -4.8433 0.7981 19 6 2.3685 -6.7366 1.2762 20 6 3.1567 -7.5649 0.4805 21 6 2.8729 -8.9189 0.4267 22 6 1.7974 -9.4028 1.1794 23 6 1.4526 -10.8408 1.1561 24 8 2.1044 -11.6107 0.4799 25 8 0.4155 -11.2965 1.8848 26 6 1.0534 -8.5081 1.9538 27 7 1.3586 -7.2301 1.9819 28 1 -0.3633 0.4513 0.9234 29 1 -0.3634 0.5740 -0.8524 30 1 -0.3634 -1.0252 -0.0708 31 1 3.0828 1.3433 -0.0708 32 1 1.5897 1.9163 -0.8524 33 1 1.7044 1.8723 0.9233 34 1 1.5611 -0.3872 2.0628 35 1 3.0797 -0.6611 1.1755 36 1 2.0658 -2.6213 0.0451 37 1 0.5472 -2.3475 0.9323 38 1 1.7447 -2.6615 3.0804 39 1 3.2636 -2.9355 2.1937 40 1 -0.1449 -4.1497 2.6319 41 1 0.1731 -5.7352 1.8881 42 1 -0.7267 -6.9999 6.3266 43 1 3.9789 -7.1558 -0.0878 44 1 3.4671 -9.5851 -0.1812 45 1 0.2282 -12.2441 1.8372 46 1 0.2210 -8.8714 2.5381 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000737370740.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:54 Heat of formation + Delta-G solvation = -79.818194 kcal Electronic energy + Delta-G solvation = -29245.168672 eV Core-core repulsion = 25135.253761 eV Total energy + Delta-G solvation = -4109.914911 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.02678 -41.07967 -39.86571 -38.61302 -37.20483 -37.01865 -34.63669 -33.92558 -33.03436 -32.47147 -29.73276 -28.47820 -27.95043 -26.32488 -24.71770 -24.40960 -23.93207 -22.72039 -21.79304 -20.74619 -19.40936 -18.92251 -18.54508 -18.25768 -17.80543 -16.84506 -16.78109 -16.57366 -16.43819 -16.11309 -15.99732 -15.68450 -15.49292 -15.25733 -14.84330 -14.59130 -14.56635 -14.44145 -14.23060 -13.74048 -13.49102 -13.25866 -13.16413 -13.10570 -12.65866 -12.63737 -12.58404 -12.52232 -12.31827 -12.30013 -11.97592 -11.95137 -11.60282 -11.49362 -11.24663 -11.09502 -10.56164 -10.40403 -10.02630 -9.45522 -9.30538 -8.10999 -6.07522 -0.91185 0.17726 1.14343 1.45641 1.47233 1.54510 1.84597 1.90345 2.09603 2.47415 2.78190 3.03396 3.14392 3.28036 3.60693 3.67080 3.77227 3.92732 4.04074 4.12268 4.17368 4.23116 4.38204 4.44680 4.51351 4.61235 4.66969 4.67013 4.73720 4.80098 4.82315 4.85264 4.90107 5.01661 5.02585 5.09697 5.15800 5.29207 5.41961 5.46168 5.64223 5.73190 6.06146 6.12346 6.28028 6.53737 6.73879 6.85828 6.90815 7.16483 7.50419 9.06204 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011306 B = 0.003658 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2475.993398 B = 7652.815831 C = 9285.170406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.565 5.565 3 C 0.025 3.975 4 C 0.064 3.936 5 C -0.113 4.113 6 C 0.118 3.882 7 N -0.574 5.574 8 C 0.221 3.779 9 C -0.475 4.475 10 H 0.022 0.978 11 C 0.030 3.970 12 N -0.951 5.951 13 Si 0.923 3.077 14 H -0.258 1.258 15 H -0.295 1.295 16 H -0.250 1.250 17 C 0.559 3.441 18 O -0.569 6.569 19 C 0.090 3.910 20 C -0.121 4.121 21 C -0.014 4.014 22 C -0.168 4.168 23 C 0.547 3.453 24 O -0.532 6.532 25 O -0.502 6.502 26 C 0.142 3.858 27 N -0.424 5.424 28 H 0.028 0.972 29 H 0.079 0.921 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.029 0.971 34 H 0.041 0.959 35 H 0.079 0.921 36 H 0.058 0.942 37 H 0.062 0.938 38 H 0.081 0.919 39 H 0.073 0.927 40 H 0.031 0.969 41 H 0.062 0.938 42 H 0.262 0.738 43 H 0.169 0.831 44 H 0.179 0.821 45 H 0.437 0.563 46 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.511 2.777 -12.054 12.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.289 5.289 3 C -0.123 4.123 4 C -0.064 4.064 5 C -0.152 4.152 6 C -0.005 4.005 7 N -0.301 5.301 8 C 0.099 3.901 9 C -0.515 4.515 10 H 0.040 0.960 11 C -0.167 4.167 12 N -0.593 5.593 13 Si 0.748 3.252 14 H -0.183 1.183 15 H -0.221 1.221 16 H -0.173 1.173 17 C 0.346 3.654 18 O -0.450 6.450 19 C -0.048 4.048 20 C -0.141 4.141 21 C -0.039 4.039 22 C -0.172 4.172 23 C 0.391 3.609 24 O -0.424 6.424 25 O -0.316 6.316 26 C -0.018 4.018 27 N -0.134 5.134 28 H 0.047 0.953 29 H 0.098 0.902 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.097 0.903 33 H 0.047 0.953 34 H 0.059 0.941 35 H 0.098 0.902 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.100 0.900 39 H 0.091 0.909 40 H 0.049 0.951 41 H 0.079 0.921 42 H 0.071 0.929 43 H 0.186 0.814 44 H 0.196 0.804 45 H 0.300 0.700 46 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -0.188 3.547 -12.253 12.758 hybrid contribution -0.682 -1.083 0.837 1.529 sum -0.869 2.464 -11.416 11.711 Atomic orbital electron populations 1.22460 0.86907 1.02362 1.01015 1.61958 1.08754 1.14874 1.43296 1.22422 1.01054 0.87751 1.01073 1.21973 1.00540 0.92313 0.91609 1.21757 1.00959 0.94555 0.97951 1.21478 1.00871 0.79334 0.98851 1.47933 1.21364 1.09086 1.51743 1.19984 0.81339 0.94645 0.94094 1.21042 0.94364 1.36414 0.99638 0.96008 1.25356 1.02139 0.94589 0.94613 1.70053 1.33346 1.42135 1.13723 0.86094 0.80146 0.80509 0.78459 1.18266 1.22126 1.17335 1.18175 0.82795 0.85489 0.78922 1.90674 1.28835 1.77291 1.48241 1.21611 0.93670 0.95026 0.94490 1.22199 1.00278 0.93038 0.98614 1.21864 0.93095 0.94842 0.94148 1.20436 1.00912 0.91736 1.04092 1.20390 0.77179 0.87990 0.75322 1.90864 1.51908 1.58206 1.41411 1.84567 1.47285 1.35339 1.64407 1.23455 0.97392 0.87899 0.93103 1.68700 1.14870 1.14704 1.15131 0.95330 0.90206 0.91867 0.91010 0.90299 0.95275 0.94095 0.90242 0.92324 0.91891 0.90048 0.90884 0.95087 0.92052 0.92929 0.81377 0.80361 0.69968 0.81502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 9.32 127.69 1.19 1.61 16 2 N -0.56 -12.83 5.02 -948.82 -4.76 -17.59 16 3 C 0.02 0.43 9.57 127.69 1.22 1.66 16 4 C 0.06 1.56 4.96 86.30 0.43 1.99 16 5 C -0.11 -3.31 5.46 30.60 0.17 -3.14 16 6 C 0.12 4.03 5.34 86.38 0.46 4.49 16 7 N -0.57 -23.20 2.47 -829.01 -2.05 -25.25 16 8 C 0.22 9.63 3.81 85.63 0.33 9.96 16 9 C -0.48 -24.88 7.97 25.60 0.20 -24.68 16 10 H 0.02 1.33 8.06 -2.91 -0.02 1.30 16 11 C 0.03 1.59 5.47 84.65 0.46 2.06 16 12 N -0.95 -55.72 13.96 21.45 0.30 -55.42 16 13 Si 0.92 40.21 27.47 68.60 1.88 42.10 16 14 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 15 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 16 H -0.25 -10.04 6.54 99.48 0.65 -9.39 16 17 C 0.56 22.81 7.61 86.94 0.66 23.47 16 18 O -0.57 -23.89 15.97 -3.67 -0.06 -23.95 16 19 C 0.09 3.38 6.56 41.96 0.28 3.65 16 20 C -0.12 -3.60 9.62 22.58 0.22 -3.38 16 21 C -0.01 -0.37 9.71 22.72 0.22 -0.15 16 22 C -0.17 -4.87 5.89 -19.94 -0.12 -4.98 16 23 C 0.55 14.13 8.28 70.38 0.58 14.71 16 24 O -0.53 -15.19 17.20 20.01 0.34 -14.85 16 25 O -0.50 -10.37 12.70 -56.01 -0.71 -11.08 16 26 C 0.14 4.92 10.78 85.13 0.92 5.84 16 27 N -0.42 -17.00 4.76 -183.85 -0.88 -17.87 16 28 H 0.03 0.56 8.14 -2.38 -0.02 0.54 16 29 H 0.08 1.36 8.12 -2.39 -0.02 1.34 16 30 H 0.06 1.40 6.47 -2.38 -0.02 1.38 16 31 H 0.07 1.19 8.12 -2.38 -0.02 1.17 16 32 H 0.08 1.16 8.12 -2.39 -0.02 1.15 16 33 H 0.03 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.04 0.95 8.12 -2.39 -0.02 0.94 16 35 H 0.08 1.86 8.06 -2.39 -0.02 1.84 16 36 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.06 1.84 6.55 -2.39 -0.02 1.83 16 38 H 0.08 2.76 8.07 -2.38 -0.02 2.74 16 39 H 0.07 2.53 7.50 -2.39 -0.02 2.52 16 40 H 0.03 1.32 7.09 -2.39 -0.02 1.30 16 41 H 0.06 2.66 5.17 -2.39 -0.01 2.65 16 42 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 43 H 0.17 4.41 7.64 -2.91 -0.02 4.39 16 44 H 0.18 3.62 7.73 -2.91 -0.02 3.60 16 45 H 0.44 4.27 9.11 -74.05 -0.67 3.60 16 46 H 0.17 5.76 7.62 -2.91 -0.02 5.74 16 Total: -1.00 -69.85 384.95 1.57 -68.28 By element: Atomic # 1 Polarization: 22.25 SS G_CDS: 0.28 Total: 22.52 kcal Atomic # 6 Polarization: 25.89 SS G_CDS: 7.22 Total: 33.11 kcal Atomic # 7 Polarization: -108.74 SS G_CDS: -7.38 Total: -116.13 kcal Atomic # 8 Polarization: -49.45 SS G_CDS: -0.43 Total: -49.88 kcal Atomic # 14 Polarization: 40.21 SS G_CDS: 1.88 Total: 42.10 kcal Total: -69.85 1.57 -68.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737370740.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.536 kcal (2) G-P(sol) polarization free energy of solvation -69.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds