Wall clock time and date at job start Tue Mar 31 2020 18:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46499 * 119.99693 * 2 1 4 4 C 1.52995 * 109.47386 * 90.00470 * 3 2 1 5 5 C 1.53003 * 109.47206 * 180.02562 * 4 3 2 6 6 C 1.50706 * 109.46907 * 179.97438 * 5 4 3 7 7 O 1.21276 * 120.00037 * 359.97438 * 6 5 4 8 8 N 1.34775 * 119.99480 * 179.97438 * 6 5 4 9 9 C 1.46497 * 120.00318 * 359.97438 * 8 6 5 10 10 C 1.50701 * 109.46866 * 252.76088 * 9 8 6 11 11 H 1.08010 * 119.99370 * 234.30604 * 10 9 8 12 12 C 1.37868 * 120.00203 * 54.30456 * 10 9 8 13 13 N 1.31513 * 120.00021 * 4.82716 * 12 10 9 14 14 Si 1.86810 * 119.99985 * 184.82312 * 12 10 9 15 15 H 1.48505 * 109.46897 * 0.02562 * 14 12 10 16 16 H 1.48496 * 109.46751 * 120.00078 * 14 12 10 17 17 H 1.48497 * 109.47219 * 240.00146 * 14 12 10 18 18 C 1.46500 * 119.99552 * 179.97438 * 8 6 5 19 19 C 1.50701 * 109.47531 * 274.72567 * 18 8 6 20 20 C 1.38678 * 120.41674 * 274.87099 * 19 18 8 21 21 C 1.38627 * 118.42143 * 179.77855 * 20 19 18 22 22 C 1.38227 * 119.15852 * 0.51165 * 21 20 19 23 23 N 1.31854 * 120.76677 * 359.72284 * 22 21 20 24 24 C 1.31888 * 121.71987 * 0.02562 * 23 22 21 25 25 C 1.34777 * 120.00101 * 180.02562 * 2 1 3 26 26 O 1.21514 * 120.00000 * 180.02562 * 25 2 1 27 27 O 1.34630 * 119.99823 * 359.97438 * 25 2 1 28 28 H 1.09000 * 109.47078 * 90.00112 * 1 2 3 29 29 H 1.09003 * 109.46949 * 209.99920 * 1 2 3 30 30 H 1.09004 * 109.47093 * 330.00042 * 1 2 3 31 31 H 1.08997 * 109.47555 * 329.99368 * 3 2 1 32 32 H 1.09002 * 109.46764 * 209.99805 * 3 2 1 33 33 H 1.08995 * 109.47702 * 59.99521 * 4 3 2 34 34 H 1.09002 * 109.46626 * 299.99420 * 4 3 2 35 35 H 1.08993 * 109.47460 * 59.99654 * 5 4 3 36 36 H 1.09002 * 109.46822 * 299.99260 * 5 4 3 37 37 H 1.08999 * 109.46879 * 132.76224 * 9 8 6 38 38 H 1.08994 * 109.46978 * 12.76162 * 9 8 6 39 39 H 0.97006 * 119.99561 * 175.00081 * 13 12 10 40 40 H 1.09006 * 109.47416 * 34.72471 * 18 8 6 41 41 H 1.09006 * 109.47417 * 154.72600 * 18 8 6 42 42 H 1.08007 * 120.79090 * 0.02562 * 20 19 18 43 43 H 1.07998 * 120.41906 * 180.20934 * 21 20 19 44 44 H 1.08002 * 119.61845 * 179.75254 * 22 21 20 45 45 H 1.08006 * 119.61190 * 180.02562 * 24 23 22 46 46 H 0.96710 * 117.00260 * 180.02562 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4526 1.7104 1.4424 5 6 3.2169 3.0358 1.4424 6 6 3.4676 3.4712 2.8632 7 8 3.0733 2.7888 3.7850 8 7 4.1300 4.6188 3.1094 9 6 4.6068 5.4427 1.9959 10 6 6.1053 5.3240 1.8888 11 1 6.7192 6.2126 1.8955 12 6 6.6925 4.0812 1.7824 13 7 5.9422 3.0061 1.6787 14 14 8.5540 3.9243 1.7855 15 1 9.1641 5.2722 1.9130 16 1 8.9776 3.0793 2.9308 17 1 9.0000 3.2966 0.5157 18 6 4.3733 5.0423 4.4906 19 6 3.1752 5.7999 5.0022 20 6 3.0457 7.1584 4.7552 21 6 1.9248 7.8134 5.2411 22 6 0.9853 7.0980 5.9597 23 7 1.1437 5.8077 6.1796 24 6 2.1949 5.1512 5.7283 25 6 2.1389 -1.1672 -0.0005 26 8 3.3541 -1.1672 -0.0001 27 8 1.4658 -2.3331 -0.0005 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6085 2.0284 -0.5139 32 1 3.1499 1.1384 -0.5138 33 1 3.0416 0.9509 1.9563 34 1 1.5001 1.8408 1.9562 35 1 2.6275 3.7952 0.9287 36 1 4.1694 2.9059 0.9284 37 1 4.3365 6.4838 2.1725 38 1 4.1480 5.1006 1.0683 39 1 6.3535 2.1400 1.5311 40 1 4.5422 4.1650 5.1153 41 1 5.2519 5.6865 4.5238 42 1 3.7984 7.6926 4.1942 43 1 1.7896 8.8703 5.0647 44 1 0.1112 7.6018 6.3452 45 1 2.2901 4.0941 5.9280 46 1 1.9924 -3.1442 -0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000737417244.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:32 Heat of formation + Delta-G solvation = -103.457532 kcal Electronic energy + Delta-G solvation = -29546.814413 eV Core-core repulsion = 25435.874424 eV Total energy + Delta-G solvation = -4110.939989 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.40411 -41.20919 -40.15497 -37.76131 -36.79489 -36.67154 -34.85635 -33.81070 -33.22851 -32.43663 -29.33272 -29.02641 -27.63446 -26.64112 -24.79625 -24.27402 -23.83192 -22.63052 -21.57395 -19.78686 -19.14916 -18.59058 -18.30180 -17.91920 -17.61583 -17.17464 -17.02902 -16.81778 -16.48347 -16.25095 -15.90336 -15.76967 -15.02083 -14.67456 -14.54445 -14.38024 -14.28740 -14.00788 -13.89274 -13.87783 -13.61236 -13.30374 -13.10260 -12.92246 -12.81331 -12.78515 -12.52732 -12.44533 -12.40616 -12.15036 -11.80339 -11.69799 -11.63578 -11.41077 -10.76942 -10.61333 -10.43700 -10.32808 -9.88940 -9.78703 -9.06487 -8.04926 -6.31191 0.20274 0.39133 1.38206 1.39473 1.46704 1.53205 1.75636 2.24798 2.41280 2.62833 3.02385 3.28762 3.38444 3.58600 3.93370 3.99308 4.07741 4.09325 4.16072 4.18754 4.26537 4.41507 4.49393 4.59148 4.65784 4.72965 4.77987 4.84004 4.90242 4.92500 4.93460 4.95233 5.05853 5.23474 5.29866 5.36351 5.45490 5.48124 5.56866 5.77510 5.84565 5.88440 6.07270 6.21300 6.26546 6.76229 7.06067 7.11250 7.37150 7.43866 7.81452 8.84434 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.008361 B = 0.004208 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3348.164623 B = 6652.974024 C = 9331.202240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.595 5.595 3 C 0.140 3.860 4 C -0.094 4.094 5 C -0.139 4.139 6 C 0.539 3.461 7 O -0.624 6.624 8 N -0.578 5.578 9 C 0.229 3.771 10 C -0.548 4.548 11 H 0.063 0.937 12 C 0.040 3.960 13 N -0.884 5.884 14 Si 0.942 3.058 15 H -0.263 1.263 16 H -0.298 1.298 17 H -0.283 1.283 18 C 0.170 3.830 19 C -0.149 4.149 20 C -0.066 4.066 21 C -0.164 4.164 22 C 0.083 3.917 23 N -0.514 5.514 24 C 0.099 3.901 25 C 0.654 3.346 26 O -0.620 6.620 27 O -0.515 6.515 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.119 0.881 32 H 0.068 0.932 33 H 0.024 0.976 34 H 0.055 0.945 35 H 0.085 0.915 36 H 0.138 0.862 37 H 0.043 0.957 38 H 0.044 0.956 39 H 0.259 0.741 40 H 0.047 0.953 41 H 0.089 0.911 42 H 0.149 0.851 43 H 0.173 0.827 44 H 0.186 0.814 45 H 0.131 0.869 46 H 0.442 0.558 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.993 3.406 -2.732 12.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.336 5.336 3 C 0.019 3.981 4 C -0.133 4.133 5 C -0.179 4.179 6 C 0.331 3.669 7 O -0.509 6.509 8 N -0.306 5.306 9 C 0.110 3.890 10 C -0.586 4.586 11 H 0.081 0.919 12 C -0.162 4.162 13 N -0.522 5.522 14 Si 0.770 3.230 15 H -0.188 1.188 16 H -0.225 1.225 17 H -0.209 1.209 18 C 0.046 3.954 19 C -0.152 4.152 20 C -0.093 4.093 21 C -0.183 4.183 22 C -0.074 4.074 23 N -0.224 5.224 24 C -0.057 4.057 25 C 0.408 3.592 26 O -0.513 6.513 27 O -0.326 6.326 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.104 0.896 31 H 0.137 0.863 32 H 0.087 0.913 33 H 0.043 0.957 34 H 0.074 0.926 35 H 0.104 0.896 36 H 0.155 0.845 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.069 0.931 40 H 0.066 0.934 41 H 0.107 0.893 42 H 0.167 0.833 43 H 0.190 0.810 44 H 0.203 0.797 45 H 0.149 0.851 46 H 0.305 0.695 Dipole moment (debyes) X Y Z Total from point charges -12.701 2.738 -1.786 13.115 hybrid contribution 2.495 -0.861 -0.224 2.649 sum -10.206 1.877 -2.010 10.570 Atomic orbital electron populations 1.22005 0.76144 1.04425 1.03530 1.46787 1.08782 1.02841 1.75147 1.21509 0.97510 0.82770 0.96354 1.21413 0.99115 0.96331 0.96468 1.21984 1.05042 0.96242 0.94668 1.20668 0.75156 0.79553 0.91538 1.90479 1.56252 1.55843 1.48320 1.48267 1.53635 1.22748 1.05995 1.19367 0.93535 0.90283 0.85854 1.21798 0.93464 0.92591 1.50796 0.91873 1.25536 1.01005 0.95864 0.93780 1.69675 1.35338 0.99003 1.48221 0.85753 0.82254 0.78021 0.76952 1.18752 1.22515 1.20939 1.19819 0.94239 0.97302 0.84067 1.21325 0.98646 0.95928 0.99332 1.21798 0.98336 0.92892 0.96262 1.22488 0.94183 1.02974 0.98628 1.23365 0.99576 0.89352 0.95129 1.67686 1.22219 1.11212 1.21246 1.22527 0.89554 0.99469 0.94146 1.18006 0.83045 0.82367 0.75778 1.91067 1.14700 1.87638 1.57879 1.84136 1.44355 1.16041 1.88089 0.90335 0.90176 0.89578 0.86310 0.91329 0.95718 0.92592 0.89644 0.84531 0.93888 0.93835 0.93141 0.93441 0.89302 0.83316 0.80978 0.79746 0.85109 0.69537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.46 10.44 127.77 1.33 2.80 16 2 N -0.60 -16.41 2.87 -977.26 -2.81 -19.22 16 3 C 0.14 4.22 5.41 86.38 0.47 4.69 16 4 C -0.09 -3.57 4.83 30.59 0.15 -3.42 16 5 C -0.14 -5.73 3.80 29.85 0.11 -5.61 16 6 C 0.54 25.36 6.34 87.66 0.56 25.92 16 7 O -0.62 -32.64 15.09 -3.02 -0.05 -32.69 16 8 N -0.58 -25.33 2.11 -830.50 -1.75 -27.08 16 9 C 0.23 9.69 5.65 85.63 0.48 10.17 16 10 C -0.55 -25.74 9.11 25.60 0.23 -25.50 16 11 H 0.06 2.90 7.82 -2.91 -0.02 2.88 16 12 C 0.04 2.00 5.33 84.65 0.45 2.45 16 13 N -0.88 -45.94 8.27 21.44 0.18 -45.77 16 14 Si 0.94 41.15 29.54 68.60 2.03 43.17 16 15 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 16 H -0.30 -13.67 7.11 99.48 0.71 -12.97 16 17 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 18 C 0.17 6.91 5.43 85.63 0.46 7.37 16 19 C -0.15 -5.23 5.44 -19.77 -0.11 -5.34 16 20 C -0.07 -1.84 9.88 22.47 0.22 -1.62 16 21 C -0.16 -3.64 10.11 22.36 0.23 -3.41 16 22 C 0.08 2.08 11.18 84.69 0.95 3.03 16 23 N -0.51 -17.30 10.36 -195.84 -2.03 -19.32 16 24 C 0.10 3.70 10.67 84.67 0.90 4.60 16 25 C 0.65 20.50 8.77 129.79 1.14 21.64 16 26 O -0.62 -25.40 16.71 19.80 0.33 -25.07 16 27 O -0.51 -11.25 12.25 -55.39 -0.68 -11.93 16 28 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.08 1.39 7.38 -2.39 -0.02 1.37 16 30 H 0.09 1.39 8.07 -2.38 -0.02 1.37 16 31 H 0.12 2.66 8.07 -2.39 -0.02 2.64 16 32 H 0.07 2.40 7.42 -2.39 -0.02 2.38 16 33 H 0.02 1.14 8.10 -2.39 -0.02 1.12 16 34 H 0.06 2.06 8.10 -2.39 -0.02 2.04 16 35 H 0.09 3.00 7.55 -2.39 -0.02 2.98 16 36 H 0.14 6.34 4.96 -2.39 -0.01 6.33 16 37 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.04 1.85 5.92 -2.39 -0.01 1.83 16 39 H 0.26 13.76 8.32 -92.70 -0.77 12.99 16 40 H 0.05 2.15 7.49 -2.38 -0.02 2.13 16 41 H 0.09 3.44 7.79 -2.38 -0.02 3.42 16 42 H 0.15 3.63 8.06 -2.91 -0.02 3.60 16 43 H 0.17 2.36 8.06 -2.91 -0.02 2.34 16 44 H 0.19 3.12 8.06 -2.91 -0.02 3.10 16 45 H 0.13 5.44 7.68 -2.91 -0.02 5.42 16 46 H 0.44 5.81 9.11 -74.05 -0.67 5.13 16 Total: -1.00 -72.44 385.16 3.13 -69.30 By element: Atomic # 1 Polarization: 30.52 SS G_CDS: 0.33 Total: 30.85 kcal Atomic # 6 Polarization: 30.17 SS G_CDS: 7.58 Total: 37.76 kcal Atomic # 7 Polarization: -104.98 SS G_CDS: -6.41 Total: -111.39 kcal Atomic # 8 Polarization: -69.30 SS G_CDS: -0.39 Total: -69.69 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.17 kcal Total: -72.44 3.13 -69.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737417244.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.153 kcal (2) G-P(sol) polarization free energy of solvation -72.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds