Wall clock time and date at job start Tue Mar 31 2020 18:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35941 * 117.00207 * 2 1 4 4 C 1.38719 * 119.91440 * 0.02562 * 3 2 1 5 5 C 1.37911 * 120.15876 * 179.97438 * 4 3 2 6 6 C 1.39705 * 119.98507 * 0.02562 * 5 4 3 7 7 C 1.47451 * 120.07853 * 180.02562 * 6 5 4 8 8 N 1.29749 * 120.00284 * 359.97438 * 7 6 5 9 9 N 1.40098 * 120.00055 * 179.97438 * 8 7 6 10 10 C 1.34779 * 119.99971 * 179.97438 * 9 8 7 11 11 O 1.21599 * 120.00347 * 173.85839 * 10 9 8 12 12 N 1.34779 * 119.99926 * 353.85777 * 10 9 8 13 13 C 1.46497 * 120.00048 * 181.04152 * 12 10 9 14 14 C 1.46505 * 119.99997 * 1.04232 * 12 10 9 15 15 C 1.39709 * 119.83934 * 359.70251 * 6 5 4 16 16 C 1.38240 * 119.84080 * 0.56594 * 15 6 5 17 17 O 1.36002 * 119.99735 * 179.72935 * 16 15 6 18 18 C 1.42899 * 116.99595 * 359.72793 * 17 16 15 19 19 C 1.53008 * 109.46722 * 179.97438 * 18 17 16 20 20 C 1.50700 * 109.47109 * 180.02562 * 19 18 17 21 21 H 1.08007 * 119.99771 * 359.97438 * 20 19 18 22 22 C 1.37874 * 119.99965 * 180.02562 * 20 19 18 23 23 N 1.31510 * 119.99734 * 179.97438 * 22 20 19 24 24 Si 1.86799 * 120.00130 * 359.97438 * 22 20 19 25 25 H 1.48505 * 109.46742 * 90.00184 * 24 22 20 26 26 H 1.48492 * 109.47078 * 210.00276 * 24 22 20 27 27 H 1.48504 * 109.47157 * 330.00601 * 24 22 20 28 28 H 1.09002 * 109.47368 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47428 * 299.99703 * 1 2 3 30 30 H 1.08999 * 109.46984 * 60.00096 * 1 2 3 31 31 H 1.08003 * 119.92729 * 0.02562 * 4 3 2 32 32 H 1.08000 * 120.00666 * 180.02562 * 5 4 3 33 33 H 1.08005 * 120.00000 * 179.97438 * 7 6 5 34 34 H 0.96994 * 120.00362 * 0.02562 * 9 8 7 35 35 H 1.08995 * 109.47431 * 90.00210 * 13 12 10 36 36 H 1.09001 * 109.47426 * 209.99866 * 13 12 10 37 37 H 1.09001 * 109.47018 * 329.99769 * 13 12 10 38 38 H 1.08992 * 109.47139 * 83.44142 * 14 12 10 39 39 H 1.09000 * 109.46923 * 203.44171 * 14 12 10 40 40 H 1.09005 * 109.46844 * 323.43664 * 14 12 10 41 41 H 1.08000 * 120.08173 * 180.29144 * 15 6 5 42 42 H 1.09002 * 109.47419 * 60.00101 * 18 17 16 43 43 H 1.08997 * 109.47200 * 299.99445 * 18 17 16 44 44 H 1.08997 * 109.46948 * 299.99744 * 19 18 17 45 45 H 1.09002 * 109.46974 * 59.99972 * 19 18 17 46 46 H 0.97000 * 119.99791 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2112 0.0000 4 6 1.2889 2.3735 0.0005 5 6 1.9098 3.6049 0.0011 6 6 3.3047 3.6836 0.0005 7 6 3.9707 4.9991 0.0017 8 7 3.2612 6.0855 0.0027 9 7 3.8941 7.3354 0.0043 10 6 3.1571 8.4639 0.0048 11 8 3.7012 9.5454 0.1189 12 7 1.8170 8.3936 -0.1211 13 6 1.0181 9.6214 -0.1435 14 6 1.1594 7.0895 -0.2356 15 6 4.0669 2.5128 0.0057 16 6 3.4374 1.2821 -0.0004 17 8 4.1764 0.1403 -0.0010 18 6 5.5977 0.2876 -0.0010 19 6 6.2536 -1.0947 -0.0009 20 6 7.7526 -0.9395 -0.0003 21 1 8.1934 0.0465 -0.0004 22 6 8.5613 -2.0562 -0.0007 23 7 9.8694 -1.9207 -0.0006 24 14 7.7990 -3.7615 -0.0013 25 1 7.5970 -4.2129 -1.4016 26 1 8.7038 -4.7085 0.6984 27 1 6.4899 -3.7188 0.6987 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.2105 2.3141 0.0014 32 1 1.3179 4.5083 0.0019 33 1 5.0491 5.0585 0.0017 34 1 4.8625 7.3887 0.0043 35 1 0.9137 9.9683 -1.1714 36 1 0.0314 9.4205 0.2740 37 1 1.5145 10.3888 0.4504 38 1 1.0074 6.6707 0.7591 39 1 0.1955 7.2108 -0.7299 40 1 1.7860 6.4168 -0.8213 41 1 5.1455 2.5691 0.0101 42 1 5.9063 0.8358 0.8893 43 1 5.9062 0.8364 -0.8907 44 1 5.9452 -1.6432 0.8891 45 1 5.9451 -1.6433 -0.8909 46 1 10.4384 -2.7063 -0.0006 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000747357941.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:08 Heat of formation + Delta-G solvation = -8.606786 kcal Electronic energy + Delta-G solvation = -27941.585453 eV Core-core repulsion = 23834.758501 eV Total energy + Delta-G solvation = -4106.826952 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.61152 -40.37979 -38.40190 -37.77751 -36.36856 -35.72423 -33.41443 -32.59885 -31.03673 -30.29307 -29.35620 -28.28740 -27.31738 -26.05532 -25.33582 -23.85965 -22.45013 -21.07662 -20.82583 -20.38259 -18.58470 -17.85753 -17.68279 -17.15073 -16.61452 -16.36857 -16.05421 -16.04765 -15.56712 -15.20955 -15.12433 -14.71841 -14.39495 -14.13519 -14.02752 -13.96532 -13.45512 -13.18956 -12.93527 -12.91650 -12.62345 -12.49136 -12.38359 -12.26298 -11.96537 -11.82693 -11.28633 -11.22808 -11.06273 -10.88131 -10.69595 -10.23500 -10.05114 -9.98885 -9.85362 -9.57099 -9.37191 -8.96613 -8.64459 -8.51558 -7.63736 -6.15752 -4.16818 0.56100 1.30748 2.06613 2.08627 2.88985 3.04327 3.18844 3.27491 3.34935 3.40714 3.57753 3.71408 4.34908 4.37512 4.58931 4.72917 4.85819 4.96336 4.99993 5.01054 5.01775 5.09068 5.15932 5.18672 5.26401 5.34160 5.35741 5.47104 5.48416 5.57455 5.79592 5.86282 5.88505 6.05510 6.07637 6.14736 6.29142 6.41382 6.44383 6.54327 6.95259 6.99242 7.19942 7.21868 7.59974 7.61068 7.84411 8.24296 8.35722 8.84488 9.44682 10.96616 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012868 B = 0.002376 C = 0.002012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.467227 B =11781.200948 C =13915.844963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.301 6.301 3 C 0.112 3.888 4 C -0.182 4.182 5 C -0.087 4.087 6 C -0.061 4.061 7 C 0.129 3.871 8 N -0.256 5.256 9 N -0.587 5.587 10 C 0.730 3.270 11 O -0.586 6.586 12 N -0.621 5.621 13 C 0.101 3.899 14 C 0.077 3.923 15 C -0.145 4.145 16 C 0.116 3.884 17 O -0.306 6.306 18 C 0.070 3.930 19 C -0.009 4.009 20 C -0.527 4.527 21 H 0.074 0.926 22 C 0.072 3.928 23 N -0.897 5.897 24 Si 0.880 3.120 25 H -0.275 1.275 26 H -0.286 1.286 27 H -0.262 1.262 28 H 0.099 0.901 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.136 0.864 32 H 0.133 0.867 33 H 0.124 0.876 34 H 0.402 0.598 35 H 0.053 0.947 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.054 0.946 39 H 0.056 0.944 40 H 0.111 0.889 41 H 0.146 0.854 42 H 0.058 0.942 43 H 0.057 0.943 44 H 0.028 0.972 45 H 0.024 0.976 46 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.892 14.654 -0.643 27.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.213 6.213 3 C 0.065 3.935 4 C -0.201 4.201 5 C -0.108 4.108 6 C -0.063 4.063 7 C -0.079 4.079 8 N -0.065 5.065 9 N -0.334 5.334 10 C 0.431 3.569 11 O -0.462 6.462 12 N -0.357 5.357 13 C -0.043 4.043 14 C -0.065 4.065 15 C -0.167 4.167 16 C 0.069 3.931 17 O -0.219 6.219 18 C -0.004 4.004 19 C -0.046 4.046 20 C -0.565 4.565 21 H 0.093 0.907 22 C -0.130 4.130 23 N -0.535 5.535 24 Si 0.707 3.293 25 H -0.201 1.201 26 H -0.212 1.212 27 H -0.187 1.187 28 H 0.117 0.883 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.153 0.847 32 H 0.151 0.849 33 H 0.142 0.858 34 H 0.244 0.756 35 H 0.072 0.928 36 H 0.089 0.911 37 H 0.095 0.905 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.128 0.872 41 H 0.163 0.837 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.047 0.953 45 H 0.042 0.958 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -23.417 15.372 -0.572 28.018 hybrid contribution 0.950 -0.866 -0.010 1.285 sum -22.467 14.506 -0.582 26.750 Atomic orbital electron populations 1.23078 0.78793 1.04022 1.01063 1.86239 1.20805 1.25931 1.88339 1.18543 0.89444 0.85203 1.00285 1.20946 0.99892 0.91283 1.08004 1.20990 0.93248 0.97252 0.99299 1.17890 0.92804 0.89448 1.06204 1.24564 0.98050 0.90858 0.94463 1.75094 1.24628 0.91213 1.15556 1.46357 1.08601 1.01537 1.76932 1.15484 0.81723 0.82210 0.77450 1.90998 1.71187 1.25520 1.58471 1.46791 1.04628 1.08494 1.75833 1.21582 0.94723 0.86020 1.01933 1.22575 0.97357 0.84132 1.02466 1.21223 1.00887 0.90026 1.04522 1.18193 0.88435 0.86846 0.99668 1.86264 1.21088 1.27075 1.87517 1.23132 0.74627 1.02216 1.00444 1.19575 0.95920 0.91086 0.98020 1.20827 0.87953 0.95249 1.52438 0.90744 1.24931 0.94671 0.99322 0.94103 1.69889 1.03180 1.30333 1.50132 0.86766 0.79755 0.84026 0.78791 1.20061 1.21212 1.18675 0.88251 0.92725 0.92729 0.84652 0.84875 0.85829 0.75644 0.92828 0.91118 0.90519 0.92755 0.92538 0.87201 0.83674 0.92409 0.92432 0.95343 0.95776 0.92442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.30 -4.07 10.27 -34.25 -0.35 -4.43 16 3 C 0.11 1.49 6.70 -39.01 -0.26 1.23 16 4 C -0.18 -1.81 9.01 -39.52 -0.36 -2.17 16 5 C -0.09 -0.83 9.57 -39.15 -0.37 -1.20 16 6 C -0.06 -0.64 5.87 -105.05 -0.62 -1.25 16 7 C 0.13 1.17 10.75 -14.68 -0.16 1.02 16 8 N -0.26 -2.41 5.74 32.15 0.18 -2.22 16 9 N -0.59 -6.10 6.27 27.64 0.17 -5.93 16 10 C 0.73 9.01 8.53 -86.91 -0.74 8.27 16 11 O -0.59 -9.09 16.75 5.28 0.09 -9.00 16 12 N -0.62 -6.12 3.27 -195.33 -0.64 -6.76 16 13 C 0.10 0.76 10.41 59.85 0.62 1.38 16 14 C 0.08 0.59 8.18 59.85 0.49 1.08 16 15 C -0.15 -1.83 8.77 -39.03 -0.34 -2.17 16 16 C 0.12 1.75 6.69 -39.18 -0.26 1.49 16 17 O -0.31 -5.67 9.91 -34.44 -0.34 -6.02 16 18 C 0.07 1.34 4.68 37.16 0.17 1.51 16 19 C -0.01 -0.20 4.41 -27.88 -0.12 -0.32 16 20 C -0.53 -14.39 9.66 -34.44 -0.33 -14.72 16 21 H 0.07 2.14 7.99 -52.48 -0.42 1.72 16 22 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 23 N -0.90 -26.79 13.96 55.43 0.77 -26.02 16 24 Si 0.88 21.23 27.47 -169.99 -4.67 16.56 16 25 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 26 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 27 H -0.26 -6.15 6.54 56.52 0.37 -5.78 16 28 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.05 0.35 7.65 -51.93 -0.40 -0.05 16 30 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 31 H 0.14 0.95 6.27 -52.48 -0.33 0.63 16 32 H 0.13 1.01 5.82 -52.49 -0.31 0.70 16 33 H 0.12 0.91 8.02 -52.48 -0.42 0.49 16 34 H 0.40 3.62 8.75 -182.60 -1.60 2.02 16 35 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.07 0.36 8.07 -51.93 -0.42 -0.06 16 37 H 0.08 0.67 7.41 -51.93 -0.38 0.28 16 38 H 0.05 0.42 7.94 -51.93 -0.41 0.00 16 39 H 0.06 0.32 8.02 -51.93 -0.42 -0.10 16 40 H 0.11 0.93 4.63 -84.23 -0.39 0.54 16 41 H 0.15 1.73 6.29 -52.49 -0.33 1.40 16 42 H 0.06 1.04 7.65 -51.93 -0.40 0.65 16 43 H 0.06 1.04 7.67 -51.93 -0.40 0.64 16 44 H 0.03 0.68 7.20 -51.93 -0.37 0.30 16 45 H 0.02 0.56 7.57 -51.93 -0.39 0.17 16 46 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 382.12 15.07 5.76 5.76 Total: -1.00 -34.36 382.12 -8.21 -42.57 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -7.79 Total: -1.79 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: -1.39 Total: -2.72 kcal Atomic # 7 Polarization: -41.42 SS G_CDS: 0.49 Total: -40.93 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: -0.60 Total: -19.44 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.67 Total: 16.56 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.36 -8.21 -42.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747357941.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.961 kcal (2) G-P(sol) polarization free energy of solvation -34.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds