Wall clock time and date at job start Tue Mar 31 2020 18:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35941 * 117.00207 * 2 1 4 4 C 1.38719 * 119.91440 * 0.02562 * 3 2 1 5 5 C 1.37911 * 120.15876 * 179.97438 * 4 3 2 6 6 C 1.39705 * 119.98507 * 0.02562 * 5 4 3 7 7 C 1.47451 * 120.07853 * 180.02562 * 6 5 4 8 8 N 1.29749 * 120.00284 * 359.97438 * 7 6 5 9 9 N 1.40098 * 120.00055 * 179.97438 * 8 7 6 10 10 C 1.34779 * 119.99971 * 179.97438 * 9 8 7 11 11 O 1.21599 * 120.00347 * 173.85839 * 10 9 8 12 12 N 1.34779 * 119.99926 * 353.85777 * 10 9 8 13 13 C 1.46497 * 120.00048 * 181.04152 * 12 10 9 14 14 C 1.46505 * 119.99997 * 1.04232 * 12 10 9 15 15 C 1.39709 * 119.83934 * 359.70251 * 6 5 4 16 16 C 1.38240 * 119.84080 * 0.56594 * 15 6 5 17 17 O 1.36002 * 119.99735 * 179.72935 * 16 15 6 18 18 C 1.42899 * 116.99595 * 359.72793 * 17 16 15 19 19 C 1.53008 * 109.46722 * 179.97438 * 18 17 16 20 20 C 1.50700 * 109.47109 * 180.02562 * 19 18 17 21 21 H 1.08007 * 119.99771 * 359.97438 * 20 19 18 22 22 C 1.37874 * 119.99965 * 180.02562 * 20 19 18 23 23 N 1.31510 * 119.99734 * 179.97438 * 22 20 19 24 24 Si 1.86799 * 120.00130 * 359.97438 * 22 20 19 25 25 H 1.48505 * 109.46742 * 90.00184 * 24 22 20 26 26 H 1.48492 * 109.47078 * 210.00276 * 24 22 20 27 27 H 1.48504 * 109.47157 * 330.00601 * 24 22 20 28 28 H 1.09002 * 109.47368 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47428 * 299.99703 * 1 2 3 30 30 H 1.08999 * 109.46984 * 60.00096 * 1 2 3 31 31 H 1.08003 * 119.92729 * 0.02562 * 4 3 2 32 32 H 1.08000 * 120.00666 * 180.02562 * 5 4 3 33 33 H 1.08005 * 120.00000 * 179.97438 * 7 6 5 34 34 H 0.96994 * 120.00362 * 0.02562 * 9 8 7 35 35 H 1.08995 * 109.47431 * 90.00210 * 13 12 10 36 36 H 1.09001 * 109.47426 * 209.99866 * 13 12 10 37 37 H 1.09001 * 109.47018 * 329.99769 * 13 12 10 38 38 H 1.08992 * 109.47139 * 83.44142 * 14 12 10 39 39 H 1.09000 * 109.46923 * 203.44171 * 14 12 10 40 40 H 1.09005 * 109.46844 * 323.43664 * 14 12 10 41 41 H 1.08000 * 120.08173 * 180.29144 * 15 6 5 42 42 H 1.09002 * 109.47419 * 60.00101 * 18 17 16 43 43 H 1.08997 * 109.47200 * 299.99445 * 18 17 16 44 44 H 1.08997 * 109.46948 * 299.99744 * 19 18 17 45 45 H 1.09002 * 109.46974 * 59.99972 * 19 18 17 46 46 H 0.97000 * 119.99791 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2112 0.0000 4 6 1.2889 2.3735 0.0005 5 6 1.9098 3.6049 0.0011 6 6 3.3047 3.6836 0.0005 7 6 3.9707 4.9991 0.0017 8 7 3.2612 6.0855 0.0027 9 7 3.8941 7.3354 0.0043 10 6 3.1571 8.4639 0.0048 11 8 3.7012 9.5454 0.1189 12 7 1.8170 8.3936 -0.1211 13 6 1.0181 9.6214 -0.1435 14 6 1.1594 7.0895 -0.2356 15 6 4.0669 2.5128 0.0057 16 6 3.4374 1.2821 -0.0004 17 8 4.1764 0.1403 -0.0010 18 6 5.5977 0.2876 -0.0010 19 6 6.2536 -1.0947 -0.0009 20 6 7.7526 -0.9395 -0.0003 21 1 8.1934 0.0465 -0.0004 22 6 8.5613 -2.0562 -0.0007 23 7 9.8694 -1.9207 -0.0006 24 14 7.7990 -3.7615 -0.0013 25 1 7.5970 -4.2129 -1.4016 26 1 8.7038 -4.7085 0.6984 27 1 6.4899 -3.7188 0.6987 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.2105 2.3141 0.0014 32 1 1.3179 4.5083 0.0019 33 1 5.0491 5.0585 0.0017 34 1 4.8625 7.3887 0.0043 35 1 0.9137 9.9683 -1.1714 36 1 0.0314 9.4205 0.2740 37 1 1.5145 10.3888 0.4504 38 1 1.0074 6.6707 0.7591 39 1 0.1955 7.2108 -0.7299 40 1 1.7860 6.4168 -0.8213 41 1 5.1455 2.5691 0.0101 42 1 5.9063 0.8358 0.8893 43 1 5.9062 0.8364 -0.8907 44 1 5.9452 -1.6432 0.8891 45 1 5.9451 -1.6433 -0.8909 46 1 10.4384 -2.7063 -0.0006 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000747357941.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:08 Heat of formation + Delta-G solvation = -31.341201 kcal Electronic energy + Delta-G solvation = -27942.571291 eV Core-core repulsion = 23834.758501 eV Total energy + Delta-G solvation = -4107.812791 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.53725 -41.26337 -39.47478 -38.69801 -37.28634 -36.50049 -35.38838 -33.51776 -32.72937 -31.27338 -30.33727 -28.89512 -28.02659 -27.08686 -26.72968 -24.67651 -23.70709 -22.27574 -21.76183 -21.48999 -19.67230 -18.93906 -18.61616 -18.46943 -17.72693 -17.19929 -17.15500 -17.11567 -16.42491 -16.32317 -16.27526 -15.91170 -15.64520 -15.18853 -14.90184 -14.67536 -14.62240 -14.37457 -14.10686 -13.96542 -13.68268 -13.35334 -13.27437 -13.07878 -13.03998 -12.90920 -12.57683 -12.51671 -12.19124 -11.98919 -11.90693 -11.79960 -11.67649 -11.53696 -11.40439 -10.79372 -10.67726 -10.42327 -9.75392 -9.39905 -8.58208 -8.32876 -6.38647 -0.27533 0.40888 1.23625 1.29499 1.36988 1.38718 1.51341 2.01230 2.29770 2.34767 2.37011 2.42959 2.83413 3.02502 3.60325 3.80389 4.03675 4.06950 4.19525 4.26186 4.29583 4.34365 4.42033 4.46719 4.48601 4.50095 4.57172 4.62888 4.72291 4.75355 4.82208 4.89613 4.91553 5.13711 5.14563 5.26286 5.26611 5.34996 5.40494 5.50164 5.54308 5.68162 5.71209 6.17208 6.20244 6.24241 6.67230 6.69820 6.82682 7.26599 7.39887 8.82508 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012868 B = 0.002376 C = 0.002012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.467227 B =11781.200948 C =13915.844963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.335 6.335 3 C 0.102 3.898 4 C -0.170 4.170 5 C -0.074 4.074 6 C -0.061 4.061 7 C 0.130 3.870 8 N -0.250 5.250 9 N -0.586 5.586 10 C 0.719 3.281 11 O -0.627 6.627 12 N -0.621 5.621 13 C 0.096 3.904 14 C 0.075 3.925 15 C -0.145 4.145 16 C 0.072 3.928 17 O -0.329 6.329 18 C 0.084 3.916 19 C -0.007 4.007 20 C -0.532 4.532 21 H 0.046 0.954 22 C 0.013 3.987 23 N -0.942 5.942 24 Si 0.945 3.055 25 H -0.266 1.266 26 H -0.281 1.281 27 H -0.252 1.252 28 H 0.110 0.890 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.171 0.829 32 H 0.160 0.840 33 H 0.140 0.860 34 H 0.406 0.594 35 H 0.061 0.939 36 H 0.100 0.900 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.084 0.916 40 H 0.103 0.897 41 H 0.144 0.856 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.024 0.976 45 H 0.024 0.976 46 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.373 14.896 -0.786 30.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.249 6.249 3 C 0.055 3.945 4 C -0.189 4.189 5 C -0.094 4.094 6 C -0.064 4.064 7 C -0.079 4.079 8 N -0.059 5.059 9 N -0.332 5.332 10 C 0.421 3.579 11 O -0.507 6.507 12 N -0.356 5.356 13 C -0.046 4.046 14 C -0.067 4.067 15 C -0.167 4.167 16 C 0.026 3.974 17 O -0.244 6.244 18 C 0.010 3.990 19 C -0.045 4.045 20 C -0.570 4.570 21 H 0.064 0.936 22 C -0.185 4.185 23 N -0.582 5.582 24 Si 0.768 3.232 25 H -0.191 1.191 26 H -0.206 1.206 27 H -0.176 1.176 28 H 0.128 0.872 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.188 0.812 32 H 0.177 0.823 33 H 0.157 0.843 34 H 0.248 0.752 35 H 0.079 0.921 36 H 0.119 0.881 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.102 0.898 40 H 0.121 0.879 41 H 0.162 0.838 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.043 0.957 45 H 0.042 0.958 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -26.951 15.608 -0.720 31.153 hybrid contribution 1.897 -0.814 0.027 2.065 sum -25.054 14.794 -0.693 29.104 Atomic orbital electron populations 1.23406 0.76201 1.05466 1.02793 1.86188 1.23658 1.26552 1.88486 1.18788 0.88980 0.86312 1.00464 1.21299 1.01398 0.90029 1.06148 1.21353 0.92917 0.98139 0.97000 1.17950 0.93367 0.89164 1.05879 1.24605 0.98934 0.90263 0.94051 1.75156 1.24288 0.90818 1.15605 1.46317 1.08864 1.01548 1.76516 1.15755 0.82637 0.81982 0.77573 1.90961 1.72180 1.27066 1.60445 1.47011 1.03940 1.10041 1.74626 1.21746 0.95513 0.84979 1.02393 1.22670 0.98216 0.82955 1.02838 1.21255 1.01062 0.90100 1.04239 1.18575 0.89267 0.86482 1.03082 1.86157 1.20065 1.29270 1.88897 1.22697 0.75847 0.99504 1.00964 1.19435 0.93743 0.93715 0.97600 1.21117 0.90238 0.94124 1.51490 0.93575 1.25846 0.95061 1.03721 0.93875 1.70020 1.04715 1.31666 1.51782 0.85730 0.79230 0.78854 0.79336 1.19063 1.20610 1.17555 0.87216 0.90926 0.90860 0.81194 0.82299 0.84308 0.75213 0.92070 0.88100 0.92241 0.92376 0.89790 0.87904 0.83839 0.92000 0.91933 0.95736 0.95803 0.92204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.32 16 2 O -0.34 -8.68 10.27 -78.84 -0.81 -9.49 16 3 C 0.10 2.55 6.70 22.64 0.15 2.70 16 4 C -0.17 -2.82 9.01 22.31 0.20 -2.62 16 5 C -0.07 -1.15 9.57 22.55 0.22 -0.93 16 6 C -0.06 -1.15 5.87 -20.14 -0.12 -1.27 16 7 C 0.13 2.10 10.75 87.43 0.94 3.04 16 8 N -0.25 -4.13 5.74 -52.19 -0.30 -4.43 16 9 N -0.59 -11.45 6.27 -184.73 -1.16 -12.61 16 10 C 0.72 17.13 8.53 179.05 1.53 18.66 16 11 O -0.63 -19.60 16.75 -4.03 -0.07 -19.67 16 12 N -0.62 -10.96 3.27 -890.16 -2.91 -13.87 16 13 C 0.10 1.26 10.41 127.77 1.33 2.59 16 14 C 0.08 0.89 8.18 127.77 1.05 1.94 16 15 C -0.15 -3.57 8.77 22.63 0.20 -3.37 16 16 C 0.07 2.15 6.69 22.53 0.15 2.30 16 17 O -0.33 -12.38 9.91 -79.52 -0.79 -13.16 16 18 C 0.08 3.30 4.68 71.98 0.34 3.63 16 19 C -0.01 -0.35 4.41 29.85 0.13 -0.22 16 20 C -0.53 -29.80 9.66 25.60 0.25 -29.55 16 21 H 0.05 2.76 7.99 -2.91 -0.02 2.74 16 22 C 0.01 0.75 5.47 84.65 0.46 1.21 16 23 N -0.94 -57.58 13.96 21.45 0.30 -57.28 16 24 Si 0.95 43.95 27.47 68.60 1.88 45.83 16 25 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 26 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 27 H -0.25 -11.18 6.54 99.48 0.65 -10.53 16 28 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.07 0.69 7.65 -2.39 -0.02 0.67 16 30 H 0.07 0.69 7.66 -2.39 -0.02 0.67 16 31 H 0.17 1.56 6.27 -2.91 -0.02 1.55 16 32 H 0.16 1.66 5.82 -2.91 -0.02 1.64 16 33 H 0.14 1.82 8.02 -2.91 -0.02 1.79 16 34 H 0.41 7.04 8.75 -213.33 -1.87 5.17 16 35 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.10 0.69 8.07 -2.39 -0.02 0.67 16 37 H 0.06 1.00 7.41 -2.39 -0.02 0.98 16 38 H 0.06 0.67 7.94 -2.39 -0.02 0.65 16 39 H 0.08 0.56 8.02 -2.39 -0.02 0.54 16 40 H 0.10 1.40 4.63 -44.65 -0.21 1.19 16 41 H 0.14 3.44 6.29 -2.91 -0.02 3.42 16 42 H 0.06 2.30 7.65 -2.39 -0.02 2.28 16 43 H 0.06 2.32 7.67 -2.39 -0.02 2.30 16 44 H 0.02 1.17 7.20 -2.39 -0.02 1.15 16 45 H 0.02 1.12 7.57 -2.39 -0.02 1.10 16 46 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -76.98 382.12 2.98 -74.01 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -1.10 Total: 11.24 kcal Atomic # 6 Polarization: -8.50 SS G_CDS: 7.93 Total: -0.57 kcal Atomic # 7 Polarization: -84.12 SS G_CDS: -4.07 Total: -88.19 kcal Atomic # 8 Polarization: -40.65 SS G_CDS: -1.67 Total: -42.32 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 1.88 Total: 45.83 kcal Total: -76.98 2.98 -74.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747357941.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.664 kcal (2) G-P(sol) polarization free energy of solvation -76.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds