Wall clock time and date at job start Tue Mar 31 2020 18:31:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35960 * 117.00125 * 2 1 4 4 C 1.38548 * 120.08484 * 0.02715 * 3 2 1 5 5 C 1.38253 * 120.01783 * 179.70236 * 4 3 2 6 6 C 1.38298 * 120.19140 * 0.54507 * 5 4 3 7 7 C 1.50696 * 119.91140 * 179.72508 * 6 5 4 8 8 N 1.46899 * 109.47390 * 269.73059 * 7 6 5 9 9 C 1.46905 * 111.00115 * 66.04270 * 8 7 6 10 10 C 1.46892 * 111.00481 * 190.00203 * 8 7 6 11 11 C 1.38168 * 120.17459 * 359.45447 * 6 5 4 12 12 C 1.38797 * 119.97774 * 0.27145 * 11 6 5 13 13 N 1.39884 * 120.09173 * 179.97438 * 12 11 6 14 14 C 1.34773 * 120.00256 * 325.33592 * 13 12 11 15 15 O 1.21381 * 119.99978 * 4.46850 * 14 13 12 16 16 C 1.49338 * 119.99976 * 184.47024 * 14 13 12 17 17 O 1.21363 * 119.99414 * 0.02562 * 16 14 13 18 18 N 1.34773 * 119.99976 * 180.02562 * 16 14 13 19 19 C 1.46500 * 119.99657 * 180.02562 * 18 16 14 20 20 C 1.50703 * 109.46903 * 180.02562 * 19 18 16 21 21 H 1.08003 * 119.99834 * 0.02562 * 20 19 18 22 22 C 1.37872 * 120.00104 * 179.97438 * 20 19 18 23 23 N 1.31518 * 119.99847 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00073 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47081 * 90.00099 * 24 22 20 26 26 H 1.48504 * 109.47210 * 209.99712 * 24 22 20 27 27 H 1.48494 * 109.47185 * 329.99848 * 24 22 20 28 28 H 1.08996 * 109.47409 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.46919 * 299.99431 * 1 2 3 30 30 H 1.08999 * 109.47464 * 59.99394 * 1 2 3 31 31 H 1.07997 * 119.99554 * 359.97438 * 4 3 2 32 32 H 1.08001 * 119.90135 * 180.29583 * 5 4 3 33 33 H 1.08996 * 109.47330 * 149.73017 * 7 6 5 34 34 H 1.09000 * 109.47035 * 29.72933 * 7 6 5 35 35 H 1.09001 * 109.47031 * 183.95840 * 9 8 7 36 36 H 1.08995 * 109.46767 * 63.95540 * 9 8 7 37 37 H 1.09001 * 109.46775 * 303.95920 * 9 8 7 38 38 H 1.09004 * 109.47002 * 299.99378 * 10 8 7 39 39 H 1.09002 * 109.47232 * 59.99427 * 10 8 7 40 40 H 1.08999 * 109.47508 * 179.97438 * 10 8 7 41 41 H 1.08003 * 120.00703 * 180.25124 * 11 6 5 42 42 H 0.97003 * 119.99285 * 145.33629 * 13 12 11 43 43 H 0.96992 * 120.00038 * 0.02562 * 18 16 14 44 44 H 1.09001 * 109.47259 * 299.99449 * 19 18 16 45 45 H 1.08999 * 109.47504 * 59.99950 * 19 18 16 46 46 H 0.97007 * 119.99472 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2934 2.3745 0.0006 5 6 1.9225 3.6056 0.0068 6 6 3.3035 3.6810 0.0011 7 6 3.9826 5.0262 0.0016 8 7 4.2032 5.4640 -1.3831 9 6 2.9268 5.7172 -2.0649 10 6 5.0687 6.6500 -1.4288 11 6 4.0620 2.5261 0.0005 12 6 3.4379 1.2864 0.0000 13 7 4.2036 0.1157 -0.0012 14 6 5.3755 0.0776 -0.6655 15 8 5.8061 1.0816 -1.1947 16 6 6.1444 -1.1998 -0.7507 17 8 5.7135 -2.2037 -0.2220 18 7 7.3166 -1.2378 -1.4147 19 6 8.0705 -2.4911 -1.4987 20 6 9.3342 -2.2652 -2.2881 21 1 9.5539 -1.2859 -2.6870 22 6 10.2102 -3.3084 -2.5003 23 7 9.9434 -4.5006 -2.0133 24 14 11.7762 -3.0286 -3.4795 25 1 12.8697 -2.6246 -2.5595 26 1 12.1548 -4.2837 -4.1771 27 1 11.5492 -1.9552 -4.4801 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 0.2149 2.3195 0.0006 32 1 1.3338 4.5110 0.0121 33 1 4.9408 4.9493 0.5154 34 1 3.3519 5.7514 0.5158 35 1 3.1162 5.9717 -3.1078 36 1 2.4120 6.5445 -1.5766 37 1 2.3053 4.8230 -2.0162 38 1 4.5996 7.4637 -0.8757 39 1 6.0331 6.4136 -0.9792 40 1 5.2160 6.9526 -2.4656 41 1 5.1403 2.5882 0.0001 42 1 3.8909 -0.6686 0.4763 43 1 7.6611 -0.4354 -1.8368 44 1 8.3256 -2.8297 -0.4945 45 1 7.4627 -3.2483 -1.9940 46 1 10.5596 -5.2347 -2.1629 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787593824.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:13 Heat of formation + Delta-G solvation = -92.773944 kcal Electronic energy + Delta-G solvation = -28473.498209 eV Core-core repulsion = 24363.021495 eV Total energy + Delta-G solvation = -4110.476714 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.22395 -41.04661 -39.63207 -39.17920 -37.52178 -36.59371 -35.73463 -34.36550 -31.99224 -31.17377 -29.69762 -28.64534 -28.41933 -27.03265 -26.43435 -24.56039 -23.47622 -22.98241 -21.79435 -21.39165 -20.14802 -19.11382 -18.29695 -18.24234 -17.44505 -17.27380 -16.98356 -16.71008 -16.61955 -16.31850 -16.06410 -15.94863 -15.78036 -15.39606 -15.18877 -14.82828 -14.61942 -14.41713 -14.08070 -13.94764 -13.63833 -13.28099 -13.16552 -13.12879 -12.99161 -12.72970 -12.66090 -12.55400 -12.52137 -12.23298 -12.21100 -12.04487 -11.90827 -11.53551 -11.46340 -10.84777 -10.66851 -10.07024 -9.61973 -9.24863 -8.86466 -8.31566 -6.47916 -0.06584 0.34441 0.54476 1.28098 1.44715 1.45867 1.57974 2.07756 2.26811 2.36576 2.63663 2.70489 3.03701 3.28224 3.43034 3.76970 3.85190 4.02133 4.15581 4.31511 4.35494 4.41917 4.43866 4.47196 4.58616 4.61445 4.72911 4.76947 4.78678 4.81667 4.96465 5.01418 5.05521 5.07138 5.16309 5.19003 5.24815 5.29768 5.50423 5.58854 5.75620 5.76932 5.93351 6.11306 6.15986 6.34203 6.47997 6.57745 6.75408 6.98662 7.25091 8.80269 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011555 B = 0.002705 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2422.640481 B =10348.767975 C =12428.191643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.338 6.338 3 C 0.105 3.895 4 C -0.185 4.185 5 C -0.074 4.074 6 C -0.104 4.104 7 C 0.102 3.898 8 N -0.568 5.568 9 C 0.022 3.978 10 C 0.026 3.974 11 C -0.076 4.076 12 C 0.082 3.918 13 N -0.628 5.628 14 C 0.517 3.483 15 O -0.515 6.515 16 C 0.494 3.506 17 O -0.558 6.558 18 N -0.671 5.671 19 C 0.263 3.737 20 C -0.562 4.562 21 H 0.080 0.920 22 C 0.010 3.990 23 N -0.926 5.926 24 Si 0.984 3.016 25 H -0.270 1.270 26 H -0.280 1.280 27 H -0.260 1.260 28 H 0.112 0.888 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.165 0.835 32 H 0.155 0.845 33 H 0.077 0.923 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.041 0.959 37 H 0.067 0.933 38 H 0.038 0.962 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.126 0.874 42 H 0.426 0.574 43 H 0.413 0.587 44 H 0.006 0.994 45 H 0.004 0.996 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.489 22.223 4.777 31.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.252 6.252 3 C 0.057 3.943 4 C -0.203 4.203 5 C -0.093 4.093 6 C -0.105 4.105 7 C -0.025 4.025 8 N -0.292 5.292 9 C -0.126 4.126 10 C -0.121 4.121 11 C -0.097 4.097 12 C -0.011 4.011 13 N -0.274 5.274 14 C 0.299 3.701 15 O -0.390 6.390 16 C 0.274 3.726 17 O -0.438 6.438 18 N -0.322 5.322 19 C 0.142 3.858 20 C -0.600 4.600 21 H 0.098 0.902 22 C -0.190 4.190 23 N -0.564 5.564 24 Si 0.807 3.193 25 H -0.195 1.195 26 H -0.206 1.206 27 H -0.183 1.183 28 H 0.130 0.870 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.183 0.817 32 H 0.173 0.827 33 H 0.096 0.904 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.059 0.941 37 H 0.086 0.914 38 H 0.056 0.944 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.144 0.856 42 H 0.265 0.735 43 H 0.250 0.750 44 H 0.023 0.977 45 H 0.022 0.978 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -21.048 21.421 4.504 30.367 hybrid contribution 0.396 0.011 0.064 0.402 sum -20.651 21.432 4.567 30.111 Atomic orbital electron populations 1.23382 0.75822 1.05555 1.02732 1.86065 1.24019 1.26363 1.88734 1.18928 0.89757 0.86266 0.99336 1.21342 1.01274 0.90574 1.07150 1.21156 0.93187 0.98085 0.96870 1.19660 0.93839 0.94278 1.02767 1.20957 1.00135 0.92056 0.89315 1.61897 1.16356 1.35076 1.15863 1.22464 0.90303 1.00757 0.99061 1.22385 0.96969 0.90281 1.02491 1.20977 1.00724 0.89970 0.98017 1.17329 0.87756 0.86358 1.09704 1.42839 1.19389 1.15319 1.49849 1.20084 0.82388 0.88539 0.79129 1.90744 1.67974 1.34966 1.45324 1.20189 0.82936 0.88697 0.80752 1.90711 1.69238 1.36405 1.47482 1.46142 1.19680 1.15377 1.50952 1.18842 0.90258 0.80667 0.96066 1.21566 1.05115 0.97721 1.35584 0.90220 1.25979 1.02246 0.94241 0.96557 1.70110 1.38642 1.01993 1.45652 0.85171 0.77725 0.78001 0.78448 1.19480 1.20577 1.18348 0.86953 0.90717 0.91359 0.81731 0.82740 0.90448 0.91818 0.91503 0.94092 0.91436 0.94354 0.91623 0.90999 0.85576 0.73512 0.75040 0.97650 0.97780 0.92015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 113.37 1.11 1.33 16 2 O -0.34 -7.40 10.05 -93.09 -0.94 -8.34 16 3 C 0.10 2.39 6.70 22.62 0.15 2.54 16 4 C -0.18 -2.95 9.04 22.35 0.20 -2.75 16 5 C -0.07 -1.14 7.90 22.29 0.18 -0.96 16 6 C -0.10 -2.14 4.88 -19.87 -0.10 -2.24 16 7 C 0.10 1.79 5.11 85.56 0.44 2.23 16 8 N -0.57 -10.80 5.01 -953.49 -4.78 -15.57 16 9 C 0.02 0.33 9.26 127.69 1.18 1.51 16 10 C 0.03 0.40 9.57 127.69 1.22 1.62 16 11 C -0.08 -2.08 8.35 22.39 0.19 -1.90 16 12 C 0.08 2.32 6.32 38.26 0.24 2.56 16 13 N -0.63 -19.96 5.17 -304.50 -1.58 -21.54 16 14 C 0.52 19.22 7.73 87.23 0.67 19.89 16 15 O -0.51 -20.01 13.89 -3.34 -0.05 -20.06 16 16 C 0.49 21.49 7.89 87.23 0.69 22.18 16 17 O -0.56 -26.82 16.48 -3.29 -0.05 -26.87 16 18 N -0.67 -30.96 5.54 -468.25 -2.59 -33.55 16 19 C 0.26 14.53 5.43 85.63 0.46 15.00 16 20 C -0.56 -31.21 9.28 25.60 0.24 -30.97 16 21 H 0.08 4.12 7.60 -2.91 -0.02 4.10 16 22 C 0.01 0.56 5.46 84.65 0.46 1.02 16 23 N -0.93 -55.24 13.29 21.45 0.28 -54.95 16 24 Si 0.98 42.89 29.54 68.60 2.03 44.92 16 25 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 26 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 27 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 28 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.07 0.57 7.66 -2.38 -0.02 0.55 16 30 H 0.07 0.62 7.66 -2.39 -0.02 0.60 16 31 H 0.17 1.49 6.30 -2.91 -0.02 1.47 16 32 H 0.16 1.38 8.00 -2.91 -0.02 1.36 16 33 H 0.08 1.43 8.00 -2.39 -0.02 1.41 16 34 H 0.06 0.82 8.06 -2.39 -0.02 0.80 16 35 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.04 0.46 8.14 -2.39 -0.02 0.44 16 37 H 0.07 1.07 5.90 -2.39 -0.01 1.06 16 38 H 0.04 0.45 8.14 -2.38 -0.02 0.43 16 39 H 0.06 1.03 8.12 -2.39 -0.02 1.01 16 40 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.13 3.99 6.20 -2.91 -0.02 3.97 16 42 H 0.43 12.98 8.04 -92.71 -0.75 12.24 16 43 H 0.41 17.49 7.79 -92.71 -0.72 16.77 16 44 H 0.01 0.33 8.14 -2.39 -0.02 0.32 16 45 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16 46 H 0.27 15.05 8.31 -92.70 -0.77 14.28 16 Total: -1.00 -72.09 387.65 -0.77 -72.86 By element: Atomic # 1 Polarization: 32.49 SS G_CDS: -0.44 Total: 32.04 kcal Atomic # 6 Polarization: 23.72 SS G_CDS: 7.34 Total: 31.07 kcal Atomic # 7 Polarization: -116.96 SS G_CDS: -8.66 Total: -125.62 kcal Atomic # 8 Polarization: -54.23 SS G_CDS: -1.04 Total: -55.27 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Total: -72.09 -0.77 -72.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787593824.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.914 kcal (2) G-P(sol) polarization free energy of solvation -72.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds