Wall clock time and date at job start Tue Mar 31 2020 18:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 N 1.41603 * 114.00291 * 2 1 4 4 C 1.46495 * 119.99990 * 270.00244 * 3 2 1 5 5 C 1.34776 * 119.99864 * 90.00320 * 3 2 1 6 6 O 1.21285 * 119.99730 * 180.02562 * 5 3 2 7 7 C 1.50697 * 119.99984 * 359.97438 * 5 3 2 8 8 N 1.46507 * 109.46680 * 180.02562 * 7 5 3 9 9 C 1.34775 * 119.99725 * 180.02562 * 8 7 5 10 10 O 1.21596 * 120.00015 * 359.97438 * 9 8 7 11 11 N 1.34771 * 120.00181 * 179.97438 * 9 8 7 12 12 C 1.46500 * 120.00556 * 179.97438 * 11 9 8 13 13 H 1.09009 * 109.46624 * 324.99750 * 12 11 9 14 14 C 1.52996 * 109.47466 * 205.00158 * 12 11 9 15 15 C 1.50702 * 109.47159 * 64.99479 * 14 12 11 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 12 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 12 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48504 * 109.47196 * 60.00645 * 19 17 15 21 21 H 1.48504 * 109.46887 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47679 * 300.00280 * 19 17 15 23 23 C 1.50700 * 109.47471 * 84.99708 * 12 11 9 24 24 C 1.38233 * 119.99377 * 39.72808 * 23 12 11 25 25 C 1.38237 * 119.99600 * 179.78842 * 24 23 12 26 26 C 1.38241 * 119.99990 * 0.44354 * 25 24 23 27 27 C 1.38237 * 119.99716 * 359.81238 * 26 25 24 28 28 C 1.38228 * 120.00326 * 220.00479 * 23 12 11 29 29 H 1.09003 * 109.47074 * 59.99817 * 1 2 3 30 30 H 1.08999 * 109.47367 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47053 * 299.99968 * 1 2 3 32 32 H 1.09001 * 109.47259 * 270.00066 * 4 3 2 33 33 H 1.09006 * 109.47612 * 29.99385 * 4 3 2 34 34 H 1.08993 * 109.47416 * 150.00088 * 4 3 2 35 35 H 1.08995 * 109.47274 * 60.00629 * 7 5 3 36 36 H 1.09001 * 109.47565 * 300.00094 * 7 5 3 37 37 H 0.96998 * 120.00038 * 0.02562 * 8 7 5 38 38 H 0.97002 * 120.00072 * 359.97438 * 11 9 8 39 39 H 1.09004 * 109.47066 * 304.99682 * 14 12 11 40 40 H 1.08994 * 109.47405 * 184.99512 * 14 12 11 41 41 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 42 42 H 1.07995 * 120.00514 * 359.97438 * 24 23 12 43 43 H 1.08001 * 120.00058 * 180.28006 * 25 24 23 44 44 H 1.07995 * 120.00194 * 179.83256 * 26 25 24 45 45 H 1.08001 * 119.99824 * 180.02562 * 27 26 25 46 46 H 1.08005 * 119.99906 * 359.97438 * 28 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 7 2.0049 1.2936 0.0000 4 6 2.3029 1.9627 -1.2687 5 6 2.2791 1.9091 1.1672 6 8 2.7721 3.0173 1.1672 7 6 1.9721 1.2210 2.4723 8 7 2.3590 2.0909 3.5858 9 6 2.1763 1.6805 4.8565 10 8 1.6899 0.5884 5.0787 11 7 2.5327 2.4805 5.8809 12 6 2.3336 2.0347 7.2621 13 1 1.4226 1.4392 7.3239 14 6 2.2092 3.2535 8.1785 15 6 0.9629 4.0232 7.8244 16 1 0.3232 3.6774 7.0258 17 6 0.6359 5.1655 8.5240 18 7 1.4146 5.5863 9.4967 19 14 -0.9129 6.1152 8.0901 20 1 -2.0975 5.2366 8.2641 21 1 -1.0362 7.2956 8.9829 22 1 -0.8363 6.5690 6.6782 23 6 3.5105 1.1988 7.6949 24 6 4.7907 1.5614 7.3201 25 6 5.8706 0.7971 7.7206 26 6 5.6696 -0.3348 8.4883 27 6 4.3888 -0.7002 8.8587 28 6 3.3093 0.0665 8.4617 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.3155 1.7107 -1.5834 33 1 1.5939 1.6336 -2.0284 34 1 2.2209 3.0417 -1.1384 35 1 2.5299 0.2864 2.5302 36 1 0.9041 1.0109 2.5299 37 1 2.7467 2.9622 3.4085 38 1 2.9210 3.3515 5.7037 39 1 3.0811 3.8950 8.0504 40 1 2.1501 2.9237 9.2157 41 1 1.1848 6.3901 9.9887 42 1 4.9474 2.4433 6.7168 43 1 6.8713 1.0829 7.4316 44 1 6.5130 -0.9334 8.7991 45 1 4.2318 -1.5843 9.4588 46 1 2.3087 -0.2190 8.7511 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000817799545.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:04 Heat of formation + Delta-G solvation = -28.307032 kcal Electronic energy + Delta-G solvation = -28798.032094 eV Core-core repulsion = 24690.350875 eV Total energy + Delta-G solvation = -4107.681219 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.42848 -39.57155 -38.50158 -37.76127 -35.34554 -34.13794 -33.38079 -32.69104 -31.09895 -30.40278 -29.13498 -28.49439 -27.39855 -25.58447 -24.56783 -22.23493 -21.90313 -20.97035 -20.60780 -19.78515 -18.72756 -17.44631 -17.04770 -16.73116 -16.71347 -16.11804 -15.71857 -15.41880 -14.81862 -14.80256 -14.72502 -14.50043 -14.38529 -14.27120 -13.57631 -13.47308 -13.33817 -13.00690 -12.93068 -12.82668 -12.51134 -12.38446 -12.21538 -12.06175 -11.49810 -11.11361 -11.09302 -10.88012 -10.67928 -10.59847 -10.41091 -10.27706 -9.74261 -9.71774 -9.49572 -9.27116 -8.97554 -8.48152 -8.41852 -8.27818 -8.11827 -6.05697 -4.08729 1.42265 1.84116 1.86874 2.08877 2.97291 3.31018 3.35778 3.38690 3.65234 3.69299 4.26930 4.42720 4.58114 4.77672 4.81221 4.85685 4.86807 5.03834 5.14356 5.30681 5.31114 5.32263 5.32901 5.33723 5.37475 5.43780 5.61028 5.89149 5.97498 6.00228 6.20029 6.41770 6.48589 6.52784 6.64647 6.90958 6.91276 6.93204 7.00214 7.16026 7.35140 7.47059 7.55326 7.57680 7.71986 7.91370 8.29672 8.53211 8.96891 9.09121 9.55920 11.04881 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.007824 B = 0.003649 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3577.953445 B = 7671.269558 C =10236.308911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.011 4.011 2 O -0.139 6.139 3 N -0.483 5.483 4 C 0.087 3.913 5 C 0.521 3.479 6 O -0.515 6.515 7 C 0.131 3.869 8 N -0.745 5.745 9 C 0.708 3.292 10 O -0.598 6.598 11 N -0.713 5.713 12 C 0.202 3.798 13 H 0.087 0.913 14 C 0.024 3.976 15 C -0.519 4.519 16 H 0.057 0.943 17 C 0.060 3.940 18 N -0.893 5.893 19 Si 0.892 3.108 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.277 1.277 23 C -0.071 4.071 24 C -0.106 4.106 25 C -0.126 4.126 26 C -0.136 4.136 27 C -0.124 4.124 28 C -0.108 4.108 29 H 0.055 0.945 30 H 0.112 0.888 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.102 0.898 36 H 0.093 0.907 37 H 0.406 0.594 38 H 0.398 0.602 39 H 0.025 0.975 40 H 0.035 0.965 41 H 0.262 0.738 42 H 0.116 0.884 43 H 0.114 0.886 44 H 0.113 0.887 45 H 0.115 0.885 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.344 -10.421 -17.245 20.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 O -0.143 6.143 3 N -0.263 5.263 4 C -0.054 4.054 5 C 0.311 3.689 6 O -0.390 6.390 7 C 0.002 3.998 8 N -0.405 5.405 9 C 0.408 3.592 10 O -0.477 6.477 11 N -0.365 5.365 12 C 0.098 3.902 13 H 0.105 0.895 14 C -0.014 4.014 15 C -0.557 4.557 16 H 0.076 0.924 17 C -0.141 4.141 18 N -0.531 5.531 19 Si 0.720 3.280 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.072 4.072 24 C -0.125 4.125 25 C -0.144 4.144 26 C -0.154 4.154 27 C -0.142 4.142 28 C -0.126 4.126 29 H 0.073 0.927 30 H 0.130 0.870 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.096 0.904 34 H 0.108 0.892 35 H 0.119 0.881 36 H 0.111 0.889 37 H 0.242 0.758 38 H 0.233 0.767 39 H 0.043 0.957 40 H 0.054 0.946 41 H 0.072 0.928 42 H 0.134 0.866 43 H 0.132 0.868 44 H 0.131 0.869 45 H 0.133 0.867 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 3.287 -10.834 -16.889 20.333 hybrid contribution -0.857 1.329 -0.479 1.653 sum 2.429 -9.505 -17.368 19.947 Atomic orbital electron populations 1.23480 0.81125 1.04466 1.01756 1.90684 1.20534 1.06262 1.96841 1.49898 1.59120 1.10566 1.06685 1.21924 1.01806 0.98098 0.83523 1.20870 0.77619 0.85270 0.85158 1.90767 1.43839 1.18645 1.85790 1.20695 1.02497 0.94068 0.82504 1.44770 1.70140 1.21956 1.03673 1.15851 0.78998 0.84298 0.80072 1.90877 1.51218 1.21591 1.84053 1.45108 1.66526 1.19943 1.04958 1.20136 0.93765 0.96799 0.79536 0.89498 1.19396 0.97761 0.90044 0.94157 1.21108 1.07943 1.08897 1.17800 0.92427 1.24981 0.96758 0.97425 0.94961 1.69952 1.37614 1.23861 1.21709 0.86658 0.83746 0.79349 0.78241 1.20251 1.21334 1.20313 1.20597 0.95682 0.94895 0.96041 1.20906 0.92146 0.99454 0.99951 1.21039 0.98405 0.95798 0.99143 1.20983 0.96759 0.97669 0.99972 1.21030 0.92849 0.99744 1.00551 1.21009 0.98938 0.94491 0.98178 0.92658 0.86992 0.92325 0.91375 0.90414 0.89222 0.88050 0.88889 0.75778 0.76741 0.95710 0.94639 0.92845 0.86602 0.86818 0.86920 0.86666 0.86183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.07 11.44 101.05 1.16 1.09 16 2 O -0.14 -1.24 10.84 -11.47 -0.12 -1.37 16 3 N -0.48 -4.73 3.36 -67.08 -0.23 -4.96 16 4 C 0.09 0.62 10.82 59.84 0.65 1.26 16 5 C 0.52 6.34 7.82 -10.99 -0.09 6.25 16 6 O -0.52 -7.44 15.25 5.55 0.08 -7.36 16 7 C 0.13 1.69 5.46 -5.19 -0.03 1.66 16 8 N -0.75 -11.34 5.53 -66.41 -0.37 -11.71 16 9 C 0.71 13.20 8.52 -86.92 -0.74 12.46 16 10 O -0.60 -12.91 16.01 5.28 0.08 -12.83 16 11 N -0.71 -13.40 4.02 -59.81 -0.24 -13.64 16 12 C 0.20 4.21 2.12 -69.08 -0.15 4.06 16 13 H 0.09 1.97 7.44 -51.92 -0.39 1.58 16 14 C 0.02 0.58 4.50 -27.88 -0.13 0.45 16 15 C -0.52 -13.89 8.84 -34.44 -0.30 -14.19 16 16 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 17 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 18 N -0.89 -25.81 13.29 55.43 0.74 -25.07 16 19 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 C -0.07 -1.35 4.91 -104.63 -0.51 -1.86 16 24 C -0.11 -1.85 9.33 -39.58 -0.37 -2.22 16 25 C -0.13 -1.94 10.05 -39.58 -0.40 -2.34 16 26 C -0.14 -1.99 10.05 -39.58 -0.40 -2.39 16 27 C -0.12 -1.91 10.05 -39.59 -0.40 -2.31 16 28 C -0.11 -1.92 9.67 -39.59 -0.38 -2.30 16 29 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.40 7.13 -51.93 -0.37 0.03 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.09 0.68 7.42 -51.93 -0.39 0.29 16 35 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.09 1.16 7.13 -51.93 -0.37 0.79 16 37 H 0.41 5.83 7.45 -40.82 -0.30 5.53 16 38 H 0.40 6.97 8.62 -40.82 -0.35 6.62 16 39 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 42 H 0.12 1.91 7.71 -52.49 -0.40 1.51 16 43 H 0.11 1.46 8.06 -52.49 -0.42 1.03 16 44 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 45 H 0.12 1.47 8.06 -52.49 -0.42 1.04 16 46 H 0.12 2.04 8.04 -52.48 -0.42 1.62 16 LS Contribution 396.32 15.07 5.97 5.97 Total: -1.00 -33.71 396.32 -8.05 -41.76 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: -6.76 Total: 11.73 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: -2.18 Total: 1.20 kcal Atomic # 7 Polarization: -55.27 SS G_CDS: -0.10 Total: -55.37 kcal Atomic # 8 Polarization: -21.60 SS G_CDS: 0.04 Total: -21.55 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.71 -8.05 -41.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817799545.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.449 kcal (2) G-P(sol) polarization free energy of solvation -33.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds