Wall clock time and date at job start Tue Mar 31 2020 18:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 N 1.41603 * 114.00291 * 2 1 4 4 C 1.46495 * 119.99990 * 270.00244 * 3 2 1 5 5 C 1.34776 * 119.99864 * 90.00320 * 3 2 1 6 6 O 1.21285 * 119.99730 * 180.02562 * 5 3 2 7 7 C 1.50697 * 119.99984 * 359.97438 * 5 3 2 8 8 N 1.46507 * 109.46680 * 180.02562 * 7 5 3 9 9 C 1.34775 * 119.99725 * 180.02562 * 8 7 5 10 10 O 1.21596 * 120.00015 * 359.97438 * 9 8 7 11 11 N 1.34771 * 120.00181 * 179.97438 * 9 8 7 12 12 C 1.46500 * 120.00556 * 179.97438 * 11 9 8 13 13 H 1.09009 * 109.46624 * 324.99750 * 12 11 9 14 14 C 1.52996 * 109.47466 * 205.00158 * 12 11 9 15 15 C 1.50702 * 109.47159 * 64.99479 * 14 12 11 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 12 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 12 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48504 * 109.47196 * 60.00645 * 19 17 15 21 21 H 1.48504 * 109.46887 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47679 * 300.00280 * 19 17 15 23 23 C 1.50700 * 109.47471 * 84.99708 * 12 11 9 24 24 C 1.38233 * 119.99377 * 39.72808 * 23 12 11 25 25 C 1.38237 * 119.99600 * 179.78842 * 24 23 12 26 26 C 1.38241 * 119.99990 * 0.44354 * 25 24 23 27 27 C 1.38237 * 119.99716 * 359.81238 * 26 25 24 28 28 C 1.38228 * 120.00326 * 220.00479 * 23 12 11 29 29 H 1.09003 * 109.47074 * 59.99817 * 1 2 3 30 30 H 1.08999 * 109.47367 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47053 * 299.99968 * 1 2 3 32 32 H 1.09001 * 109.47259 * 270.00066 * 4 3 2 33 33 H 1.09006 * 109.47612 * 29.99385 * 4 3 2 34 34 H 1.08993 * 109.47416 * 150.00088 * 4 3 2 35 35 H 1.08995 * 109.47274 * 60.00629 * 7 5 3 36 36 H 1.09001 * 109.47565 * 300.00094 * 7 5 3 37 37 H 0.96998 * 120.00038 * 0.02562 * 8 7 5 38 38 H 0.97002 * 120.00072 * 359.97438 * 11 9 8 39 39 H 1.09004 * 109.47066 * 304.99682 * 14 12 11 40 40 H 1.08994 * 109.47405 * 184.99512 * 14 12 11 41 41 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 42 42 H 1.07995 * 120.00514 * 359.97438 * 24 23 12 43 43 H 1.08001 * 120.00058 * 180.28006 * 25 24 23 44 44 H 1.07995 * 120.00194 * 179.83256 * 26 25 24 45 45 H 1.08001 * 119.99824 * 180.02562 * 27 26 25 46 46 H 1.08005 * 119.99906 * 359.97438 * 28 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 7 2.0049 1.2936 0.0000 4 6 2.3029 1.9627 -1.2687 5 6 2.2791 1.9091 1.1672 6 8 2.7721 3.0173 1.1672 7 6 1.9721 1.2210 2.4723 8 7 2.3590 2.0909 3.5858 9 6 2.1763 1.6805 4.8565 10 8 1.6899 0.5884 5.0787 11 7 2.5327 2.4805 5.8809 12 6 2.3336 2.0347 7.2621 13 1 1.4226 1.4392 7.3239 14 6 2.2092 3.2535 8.1785 15 6 0.9629 4.0232 7.8244 16 1 0.3232 3.6774 7.0258 17 6 0.6359 5.1655 8.5240 18 7 1.4146 5.5863 9.4967 19 14 -0.9129 6.1152 8.0901 20 1 -2.0975 5.2366 8.2641 21 1 -1.0362 7.2956 8.9829 22 1 -0.8363 6.5690 6.6782 23 6 3.5105 1.1988 7.6949 24 6 4.7907 1.5614 7.3201 25 6 5.8706 0.7971 7.7206 26 6 5.6696 -0.3348 8.4883 27 6 4.3888 -0.7002 8.8587 28 6 3.3093 0.0665 8.4617 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.3155 1.7107 -1.5834 33 1 1.5939 1.6336 -2.0284 34 1 2.2209 3.0417 -1.1384 35 1 2.5299 0.2864 2.5302 36 1 0.9041 1.0109 2.5299 37 1 2.7467 2.9622 3.4085 38 1 2.9210 3.3515 5.7037 39 1 3.0811 3.8950 8.0504 40 1 2.1501 2.9237 9.2157 41 1 1.1848 6.3901 9.9887 42 1 4.9474 2.4433 6.7168 43 1 6.8713 1.0829 7.4316 44 1 6.5130 -0.9334 8.7991 45 1 4.2318 -1.5843 9.4588 46 1 2.3087 -0.2190 8.7511 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000817799545.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:03 Heat of formation + Delta-G solvation = -50.756606 kcal Electronic energy + Delta-G solvation = -28799.005581 eV Core-core repulsion = 24690.350875 eV Total energy + Delta-G solvation = -4108.654706 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.55457 -40.85486 -39.80709 -38.55193 -36.91725 -35.50642 -34.70839 -34.14181 -32.53810 -31.67037 -30.59014 -29.78676 -28.03850 -26.83635 -25.97266 -23.77145 -23.35763 -22.23807 -21.64261 -21.26871 -19.95547 -18.73047 -18.29875 -18.05134 -17.65289 -17.53497 -17.07202 -16.54608 -16.49505 -16.01136 -15.97953 -15.64705 -15.41036 -15.34185 -14.88960 -14.60716 -14.53233 -14.28788 -14.15984 -14.06057 -13.64078 -13.55355 -13.52688 -13.40661 -12.90421 -12.80717 -12.63275 -12.44164 -12.13485 -11.85402 -11.80889 -11.56798 -11.35168 -11.31656 -11.16711 -10.57417 -10.41436 -10.23342 -9.79777 -9.71429 -9.48805 -8.18942 -6.28733 0.53513 0.59085 0.69932 1.14561 1.40359 1.41484 1.49630 1.68981 2.19047 2.40762 2.71892 2.98256 3.14365 3.38196 3.90116 4.02238 4.06711 4.15286 4.23746 4.28796 4.33345 4.35039 4.37463 4.40984 4.47029 4.52150 4.67945 4.75440 4.78312 4.80541 4.81926 5.14922 5.15808 5.22697 5.28081 5.31248 5.45073 5.64024 5.64283 5.66981 5.79555 5.85769 6.07287 6.13443 6.18597 6.23270 6.69349 6.83585 7.09057 7.39859 7.59883 8.91661 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.007824 B = 0.003649 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3577.953445 B = 7671.269558 C =10236.308911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.016 4.016 2 O -0.148 6.148 3 N -0.478 5.478 4 C 0.082 3.918 5 C 0.524 3.476 6 O -0.544 6.544 7 C 0.129 3.871 8 N -0.734 5.734 9 C 0.709 3.291 10 O -0.629 6.629 11 N -0.711 5.711 12 C 0.219 3.781 13 H 0.061 0.939 14 C 0.038 3.962 15 C -0.529 4.529 16 H 0.053 0.947 17 C 0.011 3.989 18 N -0.926 5.926 19 Si 0.956 3.044 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.269 1.269 23 C -0.097 4.097 24 C -0.121 4.121 25 C -0.126 4.126 26 C -0.129 4.129 27 C -0.123 4.123 28 C -0.131 4.131 29 H 0.071 0.929 30 H 0.134 0.866 31 H 0.049 0.951 32 H 0.075 0.925 33 H 0.104 0.896 34 H 0.084 0.916 35 H 0.103 0.897 36 H 0.099 0.901 37 H 0.411 0.589 38 H 0.404 0.596 39 H 0.011 0.989 40 H 0.007 0.993 41 H 0.264 0.736 42 H 0.117 0.883 43 H 0.144 0.856 44 H 0.151 0.849 45 H 0.145 0.855 46 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.848 -11.390 -18.754 22.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 O -0.152 6.152 3 N -0.257 5.257 4 C -0.057 4.057 5 C 0.313 3.687 6 O -0.422 6.422 7 C 0.002 3.998 8 N -0.393 5.393 9 C 0.408 3.592 10 O -0.510 6.510 11 N -0.364 5.364 12 C 0.114 3.886 13 H 0.079 0.921 14 C 0.001 3.999 15 C -0.567 4.567 16 H 0.071 0.929 17 C -0.188 4.188 18 N -0.566 5.566 19 Si 0.781 3.219 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.194 1.194 23 C -0.099 4.099 24 C -0.140 4.140 25 C -0.144 4.144 26 C -0.147 4.147 27 C -0.141 4.141 28 C -0.150 4.150 29 H 0.089 0.911 30 H 0.152 0.848 31 H 0.068 0.932 32 H 0.094 0.906 33 H 0.123 0.877 34 H 0.102 0.898 35 H 0.121 0.879 36 H 0.117 0.883 37 H 0.248 0.752 38 H 0.239 0.761 39 H 0.029 0.971 40 H 0.025 0.975 41 H 0.073 0.927 42 H 0.135 0.865 43 H 0.162 0.838 44 H 0.169 0.831 45 H 0.163 0.837 46 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 3.788 -11.813 -18.462 22.243 hybrid contribution -0.994 1.523 -0.048 1.820 sum 2.793 -10.290 -18.510 21.361 Atomic orbital electron populations 1.23692 0.79510 1.06013 1.02083 1.90675 1.22201 1.05465 1.96904 1.49893 1.58292 1.10761 1.06736 1.22139 1.03130 0.97644 0.82778 1.20595 0.77642 0.84920 0.85510 1.90754 1.45396 1.19725 1.86290 1.20810 1.02849 0.93794 0.82366 1.44661 1.69251 1.22358 1.03048 1.15881 0.78702 0.83780 0.80802 1.90848 1.52661 1.22880 1.84656 1.44939 1.66658 1.20281 1.04481 1.19622 0.94063 0.95019 0.79929 0.92076 1.19132 0.96323 0.91024 0.93441 1.21380 1.08607 1.09206 1.17528 0.92859 1.25769 0.99748 0.98415 0.94825 1.70065 1.39363 1.24419 1.22742 0.85647 0.79943 0.77993 0.78309 1.19886 1.20811 1.19430 1.20478 0.95569 0.95836 0.97994 1.21046 0.92228 1.00163 1.00537 1.21422 0.99048 0.95510 0.98446 1.21460 0.97537 0.97309 0.98416 1.21390 0.92505 1.00097 1.00123 1.21180 0.99894 0.95010 0.98878 0.91080 0.84810 0.93212 0.90606 0.87706 0.89768 0.87870 0.88345 0.75176 0.76126 0.97092 0.97459 0.92735 0.86514 0.83844 0.83139 0.83729 0.86683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.17 11.44 113.37 1.30 1.13 16 2 O -0.15 -2.40 10.84 -38.79 -0.42 -2.83 16 3 N -0.48 -8.73 3.36 -484.53 -1.63 -10.36 16 4 C 0.08 1.02 10.82 127.77 1.38 2.40 16 5 C 0.52 12.45 7.82 87.66 0.69 13.13 16 6 O -0.54 -15.56 15.25 -3.05 -0.05 -15.61 16 7 C 0.13 3.32 5.46 85.63 0.47 3.79 16 8 N -0.73 -22.52 5.53 -482.29 -2.67 -25.19 16 9 C 0.71 27.03 8.52 179.06 1.53 28.55 16 10 O -0.63 -27.82 16.01 -4.02 -0.06 -27.88 16 11 N -0.71 -27.70 4.02 -461.40 -1.86 -29.56 16 12 C 0.22 9.59 2.12 44.24 0.09 9.68 16 13 H 0.06 2.95 7.44 -2.38 -0.02 2.93 16 14 C 0.04 1.95 4.50 29.85 0.13 2.09 16 15 C -0.53 -29.17 8.84 25.60 0.23 -28.94 16 16 H 0.05 2.93 7.74 -2.91 -0.02 2.91 16 17 C 0.01 0.62 5.46 84.66 0.46 1.08 16 18 N -0.93 -54.67 13.29 21.45 0.28 -54.39 16 19 Si 0.96 44.02 29.54 68.60 2.03 46.05 16 20 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 21 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 22 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 23 C -0.10 -3.83 4.91 -19.87 -0.10 -3.92 16 24 C -0.12 -4.23 9.33 22.27 0.21 -4.03 16 25 C -0.13 -3.63 10.05 22.27 0.22 -3.41 16 26 C -0.13 -3.42 10.05 22.27 0.22 -3.19 16 27 C -0.12 -3.60 10.05 22.27 0.22 -3.38 16 28 C -0.13 -4.75 9.67 22.27 0.22 -4.53 16 29 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.13 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.05 0.62 7.13 -2.39 -0.02 0.61 16 32 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.10 0.72 8.14 -2.38 -0.02 0.70 16 34 H 0.08 1.18 7.42 -2.39 -0.02 1.16 16 35 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 36 H 0.10 2.43 7.13 -2.39 -0.02 2.41 16 37 H 0.41 11.91 7.45 -92.71 -0.69 11.21 16 38 H 0.40 14.65 8.62 -92.71 -0.80 13.85 16 39 H 0.01 0.57 8.14 -2.38 -0.02 0.56 16 40 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 41 H 0.26 14.77 8.31 -92.70 -0.77 14.00 16 42 H 0.12 3.91 7.71 -2.91 -0.02 3.89 16 43 H 0.14 3.21 8.06 -2.91 -0.02 3.19 16 44 H 0.15 2.85 8.06 -2.91 -0.02 2.82 16 45 H 0.14 3.29 8.06 -2.91 -0.02 3.26 16 46 H 0.12 4.12 8.04 -2.91 -0.02 4.09 16 Total: -1.00 -73.96 396.32 2.42 -71.54 By element: Atomic # 1 Polarization: 38.25 SS G_CDS: -0.48 Total: 37.76 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: 7.27 Total: 10.46 kcal Atomic # 7 Polarization: -113.63 SS G_CDS: -5.87 Total: -119.50 kcal Atomic # 8 Polarization: -45.78 SS G_CDS: -0.53 Total: -46.31 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -73.96 2.42 -71.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817799545.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.784 kcal (2) G-P(sol) polarization free energy of solvation -73.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds