Wall clock time and date at job start Tue Mar 31 2020 18:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 N 1.41602 * 114.00124 * 2 1 4 4 C 1.46503 * 120.00082 * 275.50625 * 3 2 1 5 5 C 1.34777 * 119.99746 * 95.51266 * 3 2 1 6 6 O 1.21585 * 119.99560 * 176.36721 * 5 3 2 7 7 C 1.47598 * 120.00276 * 356.36080 * 5 3 2 8 8 C 1.39751 * 120.07198 * 203.00194 * 7 5 3 9 9 C 1.37670 * 119.92211 * 180.02562 * 8 7 5 10 10 C 1.39128 * 120.07361 * 0.02562 * 9 8 7 11 11 N 1.39447 * 119.92431 * 179.97438 * 10 9 8 12 12 C 1.34778 * 119.99881 * 145.05428 * 11 10 9 13 13 O 1.21279 * 120.00143 * 354.50860 * 12 11 10 14 14 C 1.50704 * 119.99802 * 174.51682 * 12 11 10 15 15 H 1.08997 * 109.47247 * 39.99738 * 14 12 11 16 16 N 1.46897 * 109.47091 * 159.99768 * 14 12 11 17 17 C 1.52999 * 109.46758 * 279.99920 * 14 12 11 18 18 C 1.52999 * 109.46862 * 175.00180 * 17 14 12 19 19 C 1.50703 * 109.47132 * 179.97438 * 18 17 14 20 20 H 1.08000 * 120.00028 * 359.97438 * 19 18 17 21 21 C 1.37875 * 119.99562 * 179.97438 * 19 18 17 22 22 N 1.31512 * 120.00554 * 359.97438 * 21 19 18 23 23 Si 1.86809 * 119.99600 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46856 * 90.00198 * 23 21 19 25 25 H 1.48495 * 109.47207 * 210.00126 * 23 21 19 26 26 H 1.48495 * 109.46988 * 330.00235 * 23 21 19 27 27 C 1.39134 * 120.15155 * 0.22816 * 10 9 8 28 28 C 1.37677 * 120.06936 * 359.49012 * 27 10 9 29 29 H 1.09004 * 109.46549 * 60.00383 * 1 2 3 30 30 H 1.09000 * 109.46837 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.46900 * 300.00305 * 1 2 3 32 32 H 1.08994 * 109.47193 * 270.00265 * 4 3 2 33 33 H 1.08996 * 109.46651 * 30.00190 * 4 3 2 34 34 H 1.08992 * 109.47106 * 149.99816 * 4 3 2 35 35 H 1.08000 * 120.03427 * 359.97438 * 8 7 5 36 36 H 1.08004 * 119.95989 * 179.97438 * 9 8 7 37 37 H 0.96996 * 119.99829 * 325.04833 * 11 10 9 38 38 H 1.00901 * 110.99787 * 59.99834 * 16 14 12 39 39 H 1.00896 * 111.00135 * 183.95735 * 16 14 12 40 40 H 1.08996 * 109.47046 * 294.99659 * 17 14 12 41 41 H 1.08998 * 109.47514 * 54.99949 * 17 14 12 42 42 H 1.09005 * 109.46880 * 299.99802 * 18 17 14 43 43 H 1.08998 * 109.47245 * 59.99604 * 18 17 14 44 44 H 0.97006 * 119.99875 * 179.97438 * 22 21 19 45 45 H 1.07997 * 119.96383 * 179.72621 * 27 10 9 46 46 H 1.07999 * 120.03571 * 180.23274 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0050 1.2936 0.0000 4 6 2.1917 2.0123 -1.2629 5 6 2.3815 1.8635 1.1618 6 8 2.9360 2.9455 1.1564 7 6 2.1205 1.1744 2.4407 8 6 2.0498 1.9064 3.6290 9 6 1.8068 1.2604 4.8202 10 6 1.6321 -0.1197 4.8418 11 7 1.3866 -0.7710 6.0501 12 6 0.5688 -1.8418 6.0845 13 8 -0.0313 -2.1788 5.0860 14 6 0.4001 -2.6202 7.3639 15 1 0.3557 -1.9298 8.2061 16 7 -0.8442 -3.3987 7.3028 17 6 1.5869 -3.5687 7.5440 18 6 1.4798 -4.2677 8.9008 19 6 2.6486 -5.2025 9.0779 20 1 3.3930 -5.2896 8.3004 21 6 2.7673 -5.9463 10.2327 22 7 1.8611 -5.8398 11.1798 23 14 4.2157 -7.1056 10.4521 24 1 5.3372 -6.3793 11.1000 25 1 3.8085 -8.2505 11.3056 26 1 4.6526 -7.6084 9.1249 27 6 1.7071 -0.8522 3.6612 28 6 1.9441 -0.2117 2.4658 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 3.1724 1.7744 -1.6747 33 1 1.4182 1.7118 -1.9696 34 1 2.1233 3.0852 -1.0838 35 1 2.1866 2.9776 3.6129 36 1 1.7525 1.8255 5.7390 37 1 1.8044 -0.4534 6.8658 38 1 -0.8276 -4.0467 6.5296 39 1 -1.0132 -3.8792 8.1738 40 1 1.5796 -4.3148 6.7494 41 1 2.5161 -3.0005 7.5003 42 1 1.4871 -3.5215 9.6954 43 1 0.5507 -4.8359 8.9444 44 1 1.9445 -6.3635 11.9920 45 1 1.5754 -1.9239 3.6821 46 1 1.9984 -0.7803 1.5493 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000818111439.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:50 Heat of formation + Delta-G solvation = -32.256204 kcal Electronic energy + Delta-G solvation = -28284.101925 eV Core-core repulsion = 24176.249457 eV Total energy + Delta-G solvation = -4107.852468 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.85601 -40.14649 -38.31552 -37.77639 -35.67988 -34.82137 -33.39093 -32.92859 -31.21464 -30.46121 -29.98550 -27.90778 -26.94685 -26.22294 -24.34871 -23.06314 -22.81889 -21.00469 -20.65665 -19.89667 -18.59219 -18.03013 -17.46315 -17.00417 -16.56979 -16.28855 -15.73178 -15.30302 -15.11867 -14.79871 -14.69932 -14.53040 -14.50510 -14.27251 -13.99772 -13.60500 -13.40590 -13.26975 -13.13197 -13.07446 -12.77184 -12.65627 -12.27052 -12.23130 -11.81882 -11.53198 -11.17309 -10.99589 -10.96148 -10.74148 -10.41660 -10.19426 -10.07857 -10.00732 -9.47123 -9.43952 -9.30253 -9.12205 -8.49642 -8.35177 -8.26636 -6.13857 -4.17302 0.62836 1.25780 1.45963 2.33980 2.75864 2.96254 3.23947 3.31060 3.34145 3.55112 3.68691 4.34960 4.58740 4.66850 4.79378 4.80633 4.82041 4.87323 4.89660 5.01540 5.03616 5.18835 5.22333 5.22574 5.29018 5.32358 5.42648 5.43469 5.60681 5.88327 5.93063 5.97444 6.13696 6.17032 6.20351 6.35162 6.39970 6.76732 6.81109 6.97336 7.20854 7.42127 7.45337 7.54438 7.67487 7.77465 7.82820 8.13261 8.24635 8.88469 9.48094 10.96896 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.019363 B = 0.002081 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.718282 B =13450.607034 C =13627.529588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.010 4.010 2 O -0.139 6.139 3 N -0.480 5.480 4 C 0.086 3.914 5 C 0.578 3.422 6 O -0.525 6.525 7 C -0.172 4.172 8 C -0.037 4.037 9 C -0.164 4.164 10 C 0.191 3.809 11 N -0.678 5.678 12 C 0.526 3.474 13 O -0.513 6.513 14 C 0.076 3.924 15 H 0.100 0.900 16 N -0.830 5.830 17 C -0.138 4.138 18 C 0.025 3.975 19 C -0.525 4.525 20 H 0.055 0.945 21 C 0.059 3.941 22 N -0.892 5.892 23 Si 0.893 3.107 24 H -0.280 1.280 25 H -0.286 1.286 26 H -0.274 1.274 27 C -0.137 4.137 28 C -0.058 4.058 29 H 0.054 0.946 30 H 0.112 0.888 31 H 0.058 0.942 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.088 0.912 35 H 0.135 0.865 36 H 0.134 0.866 37 H 0.415 0.585 38 H 0.346 0.654 39 H 0.357 0.643 40 H 0.056 0.944 41 H 0.058 0.942 42 H 0.019 0.981 43 H 0.018 0.982 44 H 0.262 0.738 45 H 0.139 0.861 46 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.942 15.478 -20.184 25.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 O -0.143 6.143 3 N -0.260 5.260 4 C -0.055 4.055 5 C 0.370 3.630 6 O -0.402 6.402 7 C -0.176 4.176 8 C -0.057 4.057 9 C -0.184 4.184 10 C 0.095 3.905 11 N -0.323 5.323 12 C 0.315 3.685 13 O -0.386 6.386 14 C -0.039 4.039 15 H 0.118 0.882 16 N -0.363 5.363 17 C -0.178 4.178 18 C -0.012 4.012 19 C -0.563 4.563 20 H 0.073 0.927 21 C -0.143 4.143 22 N -0.531 5.531 23 Si 0.721 3.279 24 H -0.206 1.206 25 H -0.211 1.211 26 H -0.199 1.199 27 C -0.158 4.158 28 C -0.076 4.076 29 H 0.073 0.927 30 H 0.130 0.870 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.095 0.905 34 H 0.106 0.894 35 H 0.153 0.847 36 H 0.151 0.849 37 H 0.252 0.748 38 H 0.160 0.840 39 H 0.173 0.827 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.037 0.963 43 H 0.037 0.963 44 H 0.072 0.928 45 H 0.157 0.843 46 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -3.423 16.190 -20.800 26.580 hybrid contribution 1.288 -1.429 0.808 2.087 sum -2.136 14.761 -19.992 24.943 Atomic orbital electron populations 1.23421 0.81132 1.04501 1.01670 1.90590 1.20722 1.06755 1.96209 1.49897 1.58354 1.10412 1.07298 1.21916 1.02449 0.97107 0.84000 1.18412 0.77627 0.84042 0.82897 1.90825 1.42588 1.20844 1.85923 1.19638 1.10693 0.94476 0.92768 1.20945 0.94372 1.00099 0.90257 1.20856 1.06481 0.92190 0.98904 1.18060 0.94680 0.91140 0.86607 1.43683 1.48053 1.31097 1.09508 1.21200 0.76726 0.79083 0.91517 1.90657 1.44794 1.66712 1.36441 1.21487 0.92361 0.96472 0.93565 0.88182 1.58743 1.33565 1.33675 1.10306 1.22411 0.95474 0.97620 1.02298 1.19104 0.97529 0.95142 0.89463 1.21157 1.08721 1.23855 1.02598 0.92684 1.25013 0.96335 0.97023 0.95939 1.69943 1.34445 1.41282 1.07441 0.86574 0.82629 0.80549 0.78161 1.20575 1.21127 1.19872 1.21184 1.02247 1.01146 0.91174 1.21915 0.93641 0.93266 0.98819 0.92704 0.87046 0.92326 0.91418 0.90485 0.89396 0.84706 0.84860 0.74814 0.84039 0.82702 0.92486 0.92356 0.96252 0.96332 0.92828 0.84319 0.82990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.06 10.92 101.05 1.10 1.04 16 2 O -0.14 -1.24 7.79 -11.47 -0.09 -1.33 16 3 N -0.48 -4.67 3.36 -68.13 -0.23 -4.90 16 4 C 0.09 0.58 10.76 59.85 0.64 1.22 16 5 C 0.58 6.95 7.59 -12.44 -0.09 6.86 16 6 O -0.52 -7.44 16.18 5.29 0.09 -7.35 16 7 C -0.17 -2.03 5.81 -104.95 -0.61 -2.64 16 8 C -0.04 -0.41 9.58 -39.22 -0.38 -0.78 16 9 C -0.16 -1.73 9.94 -39.46 -0.39 -2.13 16 10 C 0.19 2.38 6.24 -83.73 -0.52 1.85 16 11 N -0.68 -8.28 5.31 -9.85 -0.05 -8.33 16 12 C 0.53 7.91 6.79 -10.98 -0.07 7.84 16 13 O -0.51 -8.95 14.06 5.56 0.08 -8.87 16 14 C 0.08 1.18 3.21 -68.86 -0.22 0.96 16 15 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 16 N -0.83 -13.17 8.94 -5.66 -0.05 -13.23 16 17 C -0.14 -2.53 4.78 -26.73 -0.13 -2.66 16 18 C 0.02 0.57 4.74 -27.88 -0.13 0.44 16 19 C -0.53 -14.00 9.11 -34.44 -0.31 -14.31 16 20 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 21 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 22 N -0.89 -25.46 13.29 55.43 0.74 -24.72 16 23 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 26 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 27 C -0.14 -1.79 8.62 -39.45 -0.34 -2.13 16 28 C -0.06 -0.67 8.48 -39.22 -0.33 -1.00 16 29 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.45 8.12 -51.93 -0.42 0.03 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.09 0.61 7.47 -51.93 -0.39 0.22 16 35 H 0.14 1.33 7.81 -52.49 -0.41 0.92 16 36 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 37 H 0.42 3.99 8.82 -40.82 -0.36 3.63 16 38 H 0.35 5.53 8.58 -39.29 -0.34 5.20 16 39 H 0.36 5.73 7.55 -39.29 -0.30 5.43 16 40 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.02 0.45 6.87 -51.93 -0.36 0.09 16 44 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 45 H 0.14 1.98 6.55 -52.49 -0.34 1.64 16 46 H 0.15 1.64 5.18 -52.49 -0.27 1.37 16 LS Contribution 388.01 15.07 5.85 5.85 Total: -1.00 -32.81 388.01 -7.11 -39.93 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: -6.53 Total: 10.99 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: -1.89 Total: -3.93 kcal Atomic # 7 Polarization: -51.58 SS G_CDS: 0.40 Total: -51.18 kcal Atomic # 8 Polarization: -17.63 SS G_CDS: 0.07 Total: -17.55 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.81 -7.11 -39.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000818111439.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.672 kcal (2) G-P(sol) polarization free energy of solvation -32.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds