Wall clock time and date at job start Tue Mar 31 2020 18:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 N 1.41602 * 114.00124 * 2 1 4 4 C 1.46503 * 120.00082 * 275.50625 * 3 2 1 5 5 C 1.34777 * 119.99746 * 95.51266 * 3 2 1 6 6 O 1.21585 * 119.99560 * 176.36721 * 5 3 2 7 7 C 1.47598 * 120.00276 * 356.36080 * 5 3 2 8 8 C 1.39751 * 120.07198 * 203.00194 * 7 5 3 9 9 C 1.37670 * 119.92211 * 180.02562 * 8 7 5 10 10 C 1.39128 * 120.07361 * 0.02562 * 9 8 7 11 11 N 1.39447 * 119.92431 * 179.97438 * 10 9 8 12 12 C 1.34778 * 119.99881 * 145.05428 * 11 10 9 13 13 O 1.21279 * 120.00143 * 354.50860 * 12 11 10 14 14 C 1.50704 * 119.99802 * 174.51682 * 12 11 10 15 15 H 1.08997 * 109.47247 * 39.99738 * 14 12 11 16 16 N 1.46897 * 109.47091 * 159.99768 * 14 12 11 17 17 C 1.52999 * 109.46758 * 279.99920 * 14 12 11 18 18 C 1.52999 * 109.46862 * 175.00180 * 17 14 12 19 19 C 1.50703 * 109.47132 * 179.97438 * 18 17 14 20 20 H 1.08000 * 120.00028 * 359.97438 * 19 18 17 21 21 C 1.37875 * 119.99562 * 179.97438 * 19 18 17 22 22 N 1.31512 * 120.00554 * 359.97438 * 21 19 18 23 23 Si 1.86809 * 119.99600 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46856 * 90.00198 * 23 21 19 25 25 H 1.48495 * 109.47207 * 210.00126 * 23 21 19 26 26 H 1.48495 * 109.46988 * 330.00235 * 23 21 19 27 27 C 1.39134 * 120.15155 * 0.22816 * 10 9 8 28 28 C 1.37677 * 120.06936 * 359.49012 * 27 10 9 29 29 H 1.09004 * 109.46549 * 60.00383 * 1 2 3 30 30 H 1.09000 * 109.46837 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.46900 * 300.00305 * 1 2 3 32 32 H 1.08994 * 109.47193 * 270.00265 * 4 3 2 33 33 H 1.08996 * 109.46651 * 30.00190 * 4 3 2 34 34 H 1.08992 * 109.47106 * 149.99816 * 4 3 2 35 35 H 1.08000 * 120.03427 * 359.97438 * 8 7 5 36 36 H 1.08004 * 119.95989 * 179.97438 * 9 8 7 37 37 H 0.96996 * 119.99829 * 325.04833 * 11 10 9 38 38 H 1.00901 * 110.99787 * 59.99834 * 16 14 12 39 39 H 1.00896 * 111.00135 * 183.95735 * 16 14 12 40 40 H 1.08996 * 109.47046 * 294.99659 * 17 14 12 41 41 H 1.08998 * 109.47514 * 54.99949 * 17 14 12 42 42 H 1.09005 * 109.46880 * 299.99802 * 18 17 14 43 43 H 1.08998 * 109.47245 * 59.99604 * 18 17 14 44 44 H 0.97006 * 119.99875 * 179.97438 * 22 21 19 45 45 H 1.07997 * 119.96383 * 179.72621 * 27 10 9 46 46 H 1.07999 * 120.03571 * 180.23274 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0050 1.2936 0.0000 4 6 2.1917 2.0123 -1.2629 5 6 2.3815 1.8635 1.1618 6 8 2.9360 2.9455 1.1564 7 6 2.1205 1.1744 2.4407 8 6 2.0498 1.9064 3.6290 9 6 1.8068 1.2604 4.8202 10 6 1.6321 -0.1197 4.8418 11 7 1.3866 -0.7710 6.0501 12 6 0.5688 -1.8418 6.0845 13 8 -0.0313 -2.1788 5.0860 14 6 0.4001 -2.6202 7.3639 15 1 0.3557 -1.9298 8.2061 16 7 -0.8442 -3.3987 7.3028 17 6 1.5869 -3.5687 7.5440 18 6 1.4798 -4.2677 8.9008 19 6 2.6486 -5.2025 9.0779 20 1 3.3930 -5.2896 8.3004 21 6 2.7673 -5.9463 10.2327 22 7 1.8611 -5.8398 11.1798 23 14 4.2157 -7.1056 10.4521 24 1 5.3372 -6.3793 11.1000 25 1 3.8085 -8.2505 11.3056 26 1 4.6526 -7.6084 9.1249 27 6 1.7071 -0.8522 3.6612 28 6 1.9441 -0.2117 2.4658 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 3.1724 1.7744 -1.6747 33 1 1.4182 1.7118 -1.9696 34 1 2.1233 3.0852 -1.0838 35 1 2.1866 2.9776 3.6129 36 1 1.7525 1.8255 5.7390 37 1 1.8044 -0.4534 6.8658 38 1 -0.8276 -4.0467 6.5296 39 1 -1.0132 -3.8792 8.1738 40 1 1.5796 -4.3148 6.7494 41 1 2.5161 -3.0005 7.5003 42 1 1.4871 -3.5215 9.6954 43 1 0.5507 -4.8359 8.9444 44 1 1.9445 -6.3635 11.9920 45 1 1.5754 -1.9239 3.6821 46 1 1.9984 -0.7803 1.5493 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000818111439.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:50 Heat of formation + Delta-G solvation = -55.011303 kcal Electronic energy + Delta-G solvation = -28285.088660 eV Core-core repulsion = 24176.249457 eV Total energy + Delta-G solvation = -4108.839203 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.86214 -41.11570 -39.30460 -38.55405 -37.12779 -35.89371 -34.84941 -34.10899 -32.10920 -31.69063 -31.41320 -28.69585 -28.09177 -27.16278 -25.86588 -23.99998 -23.92680 -22.39336 -21.63290 -21.10384 -19.39603 -19.13854 -18.72537 -18.17347 -17.78479 -17.28722 -16.74206 -16.47944 -16.21398 -16.07969 -15.97554 -15.66667 -15.49286 -15.25592 -15.07423 -14.75199 -14.59270 -14.31790 -14.12426 -14.02777 -13.78249 -13.67558 -13.47771 -13.38805 -12.94135 -12.85504 -12.69712 -12.54579 -12.36032 -11.81946 -11.77753 -11.75097 -11.39796 -11.30279 -10.99666 -10.79558 -10.55726 -10.22546 -10.03055 -9.68049 -9.24825 -8.21589 -6.31336 -0.30860 0.36636 0.76897 1.30398 1.39595 1.40813 1.50767 1.70145 1.91055 2.39793 2.76391 2.80922 3.12425 3.58236 3.72163 3.85280 3.91471 3.96295 4.09697 4.20933 4.28571 4.33188 4.34497 4.37000 4.41668 4.50352 4.54272 4.65129 4.72815 4.80082 4.82026 5.01860 5.06142 5.08410 5.21084 5.23244 5.31213 5.40443 5.47387 5.66138 5.81128 5.86744 6.03684 6.21290 6.21383 6.33933 6.46429 6.82597 6.84300 7.02305 7.37777 8.88870 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.019363 B = 0.002081 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.718282 B =13450.607034 C =13627.529588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.013 4.013 2 O -0.148 6.148 3 N -0.479 5.479 4 C 0.080 3.920 5 C 0.573 3.427 6 O -0.553 6.553 7 C -0.178 4.178 8 C -0.040 4.040 9 C -0.151 4.151 10 C 0.174 3.826 11 N -0.664 5.664 12 C 0.530 3.470 13 O -0.539 6.539 14 C 0.084 3.916 15 H 0.116 0.884 16 N -0.830 5.830 17 C -0.122 4.122 18 C 0.030 3.970 19 C -0.544 4.544 20 H 0.054 0.946 21 C 0.006 3.994 22 N -0.925 5.925 23 Si 0.956 3.044 24 H -0.273 1.273 25 H -0.283 1.283 26 H -0.269 1.269 27 C -0.151 4.151 28 C -0.054 4.054 29 H 0.074 0.926 30 H 0.127 0.873 31 H 0.046 0.954 32 H 0.073 0.927 33 H 0.103 0.897 34 H 0.085 0.915 35 H 0.147 0.853 36 H 0.162 0.838 37 H 0.429 0.571 38 H 0.345 0.655 39 H 0.355 0.645 40 H 0.046 0.954 41 H 0.067 0.933 42 H 0.004 0.996 43 H 0.004 0.996 44 H 0.264 0.736 45 H 0.122 0.878 46 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.487 16.252 -21.052 26.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 O -0.151 6.151 3 N -0.257 5.257 4 C -0.059 4.059 5 C 0.365 3.635 6 O -0.433 6.433 7 C -0.182 4.182 8 C -0.060 4.060 9 C -0.172 4.172 10 C 0.079 3.921 11 N -0.310 5.310 12 C 0.318 3.682 13 O -0.415 6.415 14 C -0.031 4.031 15 H 0.134 0.866 16 N -0.362 5.362 17 C -0.162 4.162 18 C -0.008 4.008 19 C -0.582 4.582 20 H 0.072 0.928 21 C -0.193 4.193 22 N -0.565 5.565 23 Si 0.782 3.218 24 H -0.198 1.198 25 H -0.209 1.209 26 H -0.193 1.193 27 C -0.171 4.171 28 C -0.073 4.073 29 H 0.092 0.908 30 H 0.144 0.856 31 H 0.064 0.936 32 H 0.092 0.908 33 H 0.122 0.878 34 H 0.104 0.896 35 H 0.165 0.835 36 H 0.180 0.820 37 H 0.268 0.732 38 H 0.158 0.842 39 H 0.170 0.830 40 H 0.065 0.935 41 H 0.086 0.914 42 H 0.022 0.978 43 H 0.022 0.978 44 H 0.072 0.928 45 H 0.140 0.860 46 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -2.959 16.976 -21.691 27.703 hybrid contribution 1.113 -1.649 1.000 2.227 sum -1.846 15.326 -20.692 25.816 Atomic orbital electron populations 1.23572 0.79782 1.05597 1.01999 1.90565 1.22098 1.06224 1.96245 1.49941 1.57544 1.10577 1.07599 1.22135 1.03808 0.96743 0.83216 1.18445 0.77608 0.83819 0.83587 1.90803 1.44075 1.21956 1.86508 1.19813 1.10510 0.94549 0.93338 1.21167 0.93899 1.00757 0.90130 1.21090 1.04770 0.91393 0.99899 1.18207 0.95707 0.91940 0.86266 1.43468 1.47164 1.30148 1.10238 1.20968 0.76964 0.79608 0.90636 1.90651 1.46106 1.67688 1.37031 1.21396 0.90829 0.96171 0.94714 0.86588 1.58763 1.33610 1.33665 1.10120 1.22150 0.97325 0.97730 0.98982 1.18973 0.95755 0.94397 0.91629 1.21615 1.09631 1.24387 1.02543 0.92772 1.25838 0.98930 0.98715 0.95828 1.70050 1.36173 1.42341 1.07942 0.85575 0.79531 0.78513 0.78202 1.19819 1.20885 1.19306 1.21141 1.03311 1.00534 0.92116 1.21912 0.93403 0.93312 0.98639 0.90772 0.85555 0.93550 0.90835 0.87846 0.89631 0.83535 0.82046 0.73215 0.84168 0.82951 0.93472 0.91443 0.97751 0.97751 0.92762 0.85971 0.82438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.15 10.92 113.37 1.24 1.09 16 2 O -0.15 -2.46 7.79 -38.79 -0.30 -2.76 16 3 N -0.48 -8.78 3.36 -487.72 -1.64 -10.42 16 4 C 0.08 0.96 10.76 127.77 1.37 2.34 16 5 C 0.57 13.39 7.59 86.71 0.66 14.05 16 6 O -0.55 -15.45 16.18 -3.98 -0.06 -15.51 16 7 C -0.18 -4.06 5.81 -20.08 -0.12 -4.18 16 8 C -0.04 -0.82 9.58 22.50 0.22 -0.60 16 9 C -0.15 -2.89 9.94 22.35 0.22 -2.66 16 10 C 0.17 4.10 6.24 38.36 0.24 4.34 16 11 N -0.66 -15.18 5.31 -303.48 -1.61 -16.79 16 12 C 0.53 15.42 6.79 87.66 0.60 16.02 16 13 O -0.54 -18.62 14.06 -3.03 -0.04 -18.66 16 14 C 0.08 2.54 3.21 44.17 0.14 2.68 16 15 H 0.12 3.14 8.14 -2.39 -0.02 3.12 16 16 N -0.83 -26.06 8.94 -171.81 -1.54 -27.60 16 17 C -0.12 -4.41 4.78 30.59 0.15 -4.26 16 18 C 0.03 1.38 4.74 29.85 0.14 1.52 16 19 C -0.54 -29.01 9.11 25.60 0.23 -28.77 16 20 H 0.05 2.83 7.74 -2.91 -0.02 2.81 16 21 C 0.01 0.30 5.46 84.65 0.46 0.76 16 22 N -0.93 -53.12 13.29 21.45 0.28 -52.84 16 23 Si 0.96 42.70 29.54 68.60 2.03 44.73 16 24 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 25 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 26 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 27 C -0.15 -3.87 8.62 22.35 0.19 -3.67 16 28 C -0.05 -1.23 8.48 22.50 0.19 -1.04 16 29 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 30 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.05 0.67 8.12 -2.39 -0.02 0.65 16 32 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.09 1.09 7.47 -2.39 -0.02 1.08 16 35 H 0.15 2.65 7.81 -2.91 -0.02 2.63 16 36 H 0.16 2.11 8.06 -2.91 -0.02 2.09 16 37 H 0.43 7.29 8.82 -92.71 -0.82 6.47 16 38 H 0.35 11.03 8.58 -89.69 -0.77 10.26 16 39 H 0.36 11.41 7.55 -89.70 -0.68 10.73 16 40 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 42 H 0.00 0.20 8.14 -2.38 -0.02 0.18 16 43 H 0.00 0.21 6.87 -2.39 -0.02 0.19 16 44 H 0.26 14.34 8.31 -92.70 -0.77 13.57 16 45 H 0.12 3.54 6.55 -2.91 -0.02 3.52 16 46 H 0.16 3.33 5.18 -2.91 -0.02 3.32 16 Total: -1.00 -70.07 388.01 1.82 -68.25 By element: Atomic # 1 Polarization: 35.22 SS G_CDS: -1.23 Total: 33.99 kcal Atomic # 6 Polarization: -8.33 SS G_CDS: 5.94 Total: -2.40 kcal Atomic # 7 Polarization: -103.15 SS G_CDS: -4.50 Total: -107.65 kcal Atomic # 8 Polarization: -36.52 SS G_CDS: -0.41 Total: -36.93 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Total: -70.07 1.82 -68.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000818111439.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.235 kcal (2) G-P(sol) polarization free energy of solvation -70.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds