Wall clock time and date at job start Tue Mar 31 2020 18:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35675 * 117.00323 * 2 1 4 4 C 1.38918 * 119.68647 * 180.29342 * 3 2 1 5 5 C 1.38377 * 119.11156 * 180.24750 * 4 3 2 6 6 C 1.50703 * 120.75497 * 179.73488 * 5 4 3 7 7 O 1.42897 * 109.47370 * 269.72633 * 6 5 4 8 8 C 1.42896 * 114.00042 * 180.02562 * 7 6 5 9 9 C 1.50707 * 109.46991 * 179.97438 * 8 7 6 10 10 O 1.21275 * 120.00197 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99596 * 180.02562 * 9 8 7 12 12 C 1.46969 * 120.59184 * 179.97438 * 11 9 8 13 13 C 1.53365 * 108.63823 * 235.24762 * 12 11 9 14 14 N 1.46971 * 108.63406 * 310.57818 * 13 12 11 15 15 C 1.36933 * 120.58954 * 235.20080 * 14 13 12 16 16 H 1.08004 * 119.99676 * 151.84704 * 15 14 13 17 17 C 1.38804 * 120.00274 * 331.57456 * 15 14 13 18 18 N 1.31613 * 120.00257 * 342.82344 * 17 15 14 19 19 Si 1.86809 * 120.00042 * 162.81945 * 17 15 14 20 20 H 1.48504 * 109.46931 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.46750 * 119.99895 * 19 17 15 22 22 H 1.48498 * 109.47076 * 239.99975 * 19 17 15 23 23 C 1.46964 * 118.81046 * 55.47559 * 14 13 12 24 24 C 1.46965 * 120.59893 * 0.02562 * 11 9 8 25 25 C 1.38822 * 118.48466 * 359.46704 * 5 4 3 26 26 C 1.38042 * 119.28876 * 0.27016 * 25 5 4 27 27 N 1.31958 * 120.83808 * 0.02562 * 26 25 5 28 28 H 1.08999 * 109.47264 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46815 * 299.99970 * 1 2 3 30 30 H 1.09001 * 109.46814 * 59.99602 * 1 2 3 31 31 H 1.08009 * 120.44338 * 359.97438 * 4 3 2 32 32 H 1.09003 * 109.47038 * 149.72529 * 6 5 4 33 33 H 1.09000 * 109.47251 * 29.72868 * 6 5 4 34 34 H 1.09008 * 109.47444 * 60.00042 * 8 7 6 35 35 H 1.08996 * 109.47463 * 300.00170 * 8 7 6 36 36 H 1.09001 * 109.60759 * 115.50025 * 12 11 9 37 37 H 1.08997 * 109.60686 * 354.99512 * 12 11 9 38 38 H 1.08993 * 109.61301 * 190.83327 * 13 12 11 39 39 H 1.09004 * 109.75220 * 70.40370 * 13 12 11 40 40 H 0.97004 * 120.00510 * 180.02562 * 18 17 15 41 41 H 1.08995 * 109.60931 * 64.27031 * 23 14 13 42 42 H 1.09004 * 109.60392 * 184.78099 * 23 14 13 43 43 H 1.09002 * 109.60509 * 244.49992 * 24 11 9 44 44 H 1.09000 * 109.60856 * 4.83277 * 24 11 9 45 45 H 1.08007 * 120.35256 * 180.24536 * 25 5 4 46 46 H 1.08007 * 119.58209 * 179.97438 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 3.4327 1.2739 -0.0062 5 6 4.0486 2.5130 -0.0009 6 6 5.5513 2.6267 -0.0013 7 8 6.0267 2.6629 1.3458 8 6 7.4471 2.7709 1.4582 9 6 7.8349 2.8011 2.9142 10 8 6.9792 2.7369 3.7711 11 7 9.1328 2.9004 3.2639 12 6 9.5257 2.9315 4.6797 13 6 10.3615 4.1930 4.9288 14 7 11.4092 4.2727 3.9011 15 6 12.7276 4.3746 4.2566 16 1 13.4949 3.9904 3.6007 17 6 13.0784 4.9766 5.4571 18 7 12.2115 5.7394 6.0887 19 14 14.7807 4.7040 6.1763 20 1 15.5602 3.8132 5.2796 21 1 15.4782 6.0087 6.3054 22 1 14.6573 4.0741 7.5154 23 6 11.0158 4.2473 2.4853 24 6 10.1804 2.9807 2.2362 25 6 3.2506 3.6490 -0.0009 26 6 1.8773 3.5096 -0.0005 27 7 1.3187 2.3140 0.0005 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 4.0229 0.3694 -0.0106 32 1 5.8463 3.5415 -0.5154 33 1 5.9806 1.7666 -0.5151 34 1 7.7811 3.6889 0.9745 35 1 7.9161 1.9141 0.9745 36 1 10.1186 2.0475 4.9143 37 1 8.6341 2.9538 5.3063 38 1 10.8207 4.1386 5.9158 39 1 9.7237 5.0750 4.8702 40 1 12.4567 6.1604 6.9275 41 1 10.4218 5.1316 2.2548 42 1 11.9073 4.2287 1.8584 43 1 10.8200 2.1002 2.2965 44 1 9.7212 3.0324 1.2490 45 1 3.6996 4.6313 -0.0008 46 1 1.2519 4.3902 0.0000 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000859487260.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:40 Heat of formation + Delta-G solvation = -63.195316 kcal Electronic energy + Delta-G solvation = -28111.809986 eV Core-core repulsion = 24002.615897 eV Total energy + Delta-G solvation = -4109.194089 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.66336 -41.10160 -39.31808 -38.66634 -38.04195 -35.65551 -34.23787 -33.07331 -32.24753 -31.73890 -29.76572 -28.62432 -28.07080 -26.95643 -25.36235 -24.46111 -24.30601 -22.78658 -22.25272 -20.25492 -19.22715 -18.65247 -18.22207 -18.00416 -17.58663 -17.16610 -17.00470 -16.92668 -16.71246 -16.47454 -15.86410 -15.59487 -15.44958 -15.27099 -15.08253 -14.98764 -14.89026 -14.37714 -14.05360 -13.99251 -13.38077 -13.30133 -13.16694 -12.97493 -12.77369 -12.63167 -12.57452 -12.44970 -12.24904 -12.18050 -12.00786 -11.86186 -11.65408 -10.94466 -10.75486 -10.70506 -10.67398 -10.61129 -9.83821 -9.52891 -8.65810 -7.88015 -5.36707 0.04605 0.18006 1.47581 1.50761 1.58620 1.60412 1.78234 2.10230 2.50889 2.62303 3.04449 3.27424 3.33719 3.52948 3.61047 3.81666 3.94667 4.09317 4.13569 4.14687 4.25354 4.29482 4.32670 4.40067 4.41295 4.42791 4.46654 4.53054 4.55449 4.67327 4.73777 4.74920 4.80656 4.87724 4.88394 5.07670 5.27178 5.29289 5.41875 5.44858 5.61426 5.67132 6.02503 6.20659 6.36158 6.50633 6.79743 7.09847 7.17577 7.80179 8.33091 9.17412 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.034186 B = 0.001842 C = 0.001833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.854715 B =15199.276807 C =15271.545979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.324 6.324 3 C 0.296 3.704 4 C -0.181 4.181 5 C -0.021 4.021 6 C 0.097 3.903 7 O -0.391 6.391 8 C 0.054 3.946 9 C 0.502 3.498 10 O -0.586 6.586 11 N -0.600 5.600 12 C 0.103 3.897 13 C 0.170 3.830 14 N -0.609 5.609 15 C -0.259 4.259 16 H 0.078 0.922 17 C -0.053 4.053 18 N -0.938 5.938 19 Si 0.968 3.032 20 H -0.261 1.261 21 H -0.295 1.295 22 H -0.294 1.294 23 C 0.123 3.877 24 C 0.096 3.904 25 C -0.190 4.190 26 C 0.129 3.871 27 N -0.554 5.554 28 H 0.121 0.879 29 H 0.052 0.948 30 H 0.060 0.940 31 H 0.149 0.851 32 H 0.095 0.905 33 H 0.090 0.910 34 H 0.112 0.888 35 H 0.118 0.882 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.068 0.932 39 H -0.008 1.008 40 H 0.250 0.750 41 H 0.019 0.981 42 H 0.084 0.916 43 H 0.079 0.921 44 H 0.124 0.876 45 H 0.162 0.838 46 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.737 -8.563 -19.359 26.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.231 6.231 3 C 0.118 3.882 4 C -0.202 4.202 5 C -0.029 4.029 6 C 0.022 3.978 7 O -0.311 6.311 8 C -0.024 4.024 9 C 0.291 3.709 10 O -0.466 6.466 11 N -0.334 5.334 12 C -0.021 4.021 13 C 0.043 3.957 14 N -0.333 5.333 15 C -0.389 4.389 16 H 0.096 0.904 17 C -0.248 4.248 18 N -0.584 5.584 19 Si 0.796 3.204 20 H -0.185 1.185 21 H -0.223 1.223 22 H -0.221 1.221 23 C -0.003 4.003 24 C -0.027 4.027 25 C -0.210 4.210 26 C -0.026 4.026 27 N -0.279 5.279 28 H 0.139 0.861 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.167 0.833 32 H 0.113 0.887 33 H 0.108 0.892 34 H 0.130 0.870 35 H 0.136 0.864 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.010 0.990 40 H 0.059 0.941 41 H 0.037 0.963 42 H 0.102 0.898 43 H 0.098 0.902 44 H 0.142 0.858 45 H 0.179 0.821 46 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -18.060 -8.890 -18.647 27.439 hybrid contribution 1.494 0.510 1.017 1.877 sum -16.566 -8.380 -17.631 25.603 Atomic orbital electron populations 1.23041 0.75833 1.04603 1.02199 1.86213 1.24419 1.24552 1.87960 1.20034 0.89808 0.85104 0.93294 1.21160 0.92030 0.99896 1.07080 1.20036 0.96049 0.92378 0.94401 1.21575 0.88555 1.04272 0.83400 1.88039 1.20513 1.95449 1.27055 1.22348 0.82786 1.05504 0.91802 1.21091 0.81708 0.75844 0.92240 1.90668 1.50295 1.51912 1.53755 1.48102 1.05967 1.71377 1.07921 1.22077 0.98408 0.99582 0.82034 1.20863 0.88621 0.91785 0.94428 1.44276 1.02664 1.85385 1.00958 1.19616 0.84093 1.30711 1.04469 0.90394 1.25860 1.01109 0.96953 1.00888 1.70184 1.37082 1.33101 1.18064 0.85205 0.80036 0.77113 0.78048 1.18486 1.22272 1.22124 1.21615 0.97980 0.94969 0.85747 1.22572 0.89537 0.99571 0.91028 1.22265 0.94782 1.00352 1.03563 1.22936 0.93447 0.93921 0.92273 1.67327 1.41612 0.99471 1.19473 0.86052 0.92879 0.92161 0.83280 0.88663 0.89182 0.87028 0.86396 0.91408 0.91230 0.91392 0.99027 0.94137 0.96338 0.89790 0.90229 0.85799 0.82088 0.79320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.56 10.38 113.37 1.18 1.74 16 2 O -0.32 -7.03 10.48 -89.93 -0.94 -7.97 16 3 C 0.30 6.80 7.49 84.79 0.63 7.44 16 4 C -0.18 -3.80 9.74 22.47 0.22 -3.58 16 5 C -0.02 -0.39 5.54 -19.69 -0.11 -0.50 16 6 C 0.10 1.48 6.11 71.24 0.44 1.91 16 7 O -0.39 -9.66 9.86 -129.94 -1.28 -10.94 16 8 C 0.05 1.13 4.76 71.24 0.34 1.46 16 9 C 0.50 16.68 7.77 87.66 0.68 17.36 16 10 O -0.59 -25.57 15.90 16.02 0.25 -25.31 16 11 N -0.60 -20.07 2.95 -817.25 -2.41 -22.48 16 12 C 0.10 4.17 6.59 86.41 0.57 4.74 16 13 C 0.17 8.24 5.51 86.41 0.48 8.71 16 14 N -0.61 -28.69 2.96 -697.46 -2.06 -30.75 16 15 C -0.26 -13.34 9.57 84.03 0.80 -12.53 16 16 H 0.08 3.80 7.89 -2.91 -0.02 3.77 16 17 C -0.05 -2.85 4.91 84.86 0.42 -2.44 16 18 N -0.94 -54.82 11.20 21.65 0.24 -54.58 16 19 Si 0.97 43.38 29.59 68.60 2.03 45.41 16 20 H -0.26 -10.87 7.11 99.48 0.71 -10.17 16 21 H -0.30 -13.40 7.11 99.48 0.71 -12.69 16 22 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 23 C 0.12 4.30 6.70 86.55 0.58 4.88 16 24 C 0.10 2.50 6.52 86.55 0.56 3.07 16 25 C -0.19 -3.18 9.81 22.36 0.22 -2.96 16 26 C 0.13 2.23 11.17 84.63 0.95 3.17 16 27 N -0.55 -12.13 9.22 -308.95 -2.85 -14.98 16 28 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.05 0.84 8.10 -2.39 -0.02 0.82 16 30 H 0.06 0.85 8.10 -2.39 -0.02 0.83 16 31 H 0.15 2.74 8.06 -2.91 -0.02 2.71 16 32 H 0.10 0.93 8.10 -2.39 -0.02 0.91 16 33 H 0.09 0.92 8.10 -2.39 -0.02 0.90 16 34 H 0.11 1.66 7.72 -2.38 -0.02 1.64 16 35 H 0.12 1.55 7.91 -2.39 -0.02 1.53 16 36 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 37 H 0.07 2.95 6.99 -2.39 -0.02 2.93 16 38 H 0.07 3.72 6.00 -2.39 -0.01 3.70 16 39 H -0.01 -0.45 8.14 -2.38 -0.02 -0.47 16 40 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 41 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.08 2.67 7.93 -2.39 -0.02 2.65 16 43 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 44 H 0.12 1.93 5.91 -2.39 -0.01 1.92 16 45 H 0.16 1.92 8.06 -2.91 -0.02 1.90 16 46 H 0.19 1.96 8.06 -2.91 -0.02 1.94 16 Total: -1.00 -79.15 382.02 1.92 -77.23 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: 0.98 Total: 11.90 kcal Atomic # 6 Polarization: 24.52 SS G_CDS: 7.95 Total: 32.48 kcal Atomic # 7 Polarization: -115.71 SS G_CDS: -7.08 Total: -122.79 kcal Atomic # 8 Polarization: -42.25 SS G_CDS: -1.97 Total: -44.22 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -79.15 1.92 -77.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859487260.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.032 kcal (2) G-P(sol) polarization free energy of solvation -79.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds