Wall clock time and date at job start Tue Mar 31 2020 18:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34231 * 116.99743 * 2 1 4 4 O 1.20823 * 120.00101 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99799 * 179.97438 * 3 2 1 6 6 C 1.52998 * 109.47050 * 179.97438 * 5 3 2 7 7 N 1.46504 * 109.47238 * 180.02562 * 6 5 3 8 8 C 1.37093 * 120.00159 * 264.54314 * 7 6 5 9 9 H 1.08007 * 119.99611 * 146.01528 * 8 7 6 10 10 C 1.38948 * 120.00203 * 326.01819 * 8 7 6 11 11 N 1.31414 * 119.99919 * 337.79994 * 10 8 7 12 12 Si 1.86796 * 120.00218 * 157.80803 * 10 8 7 13 13 H 1.48496 * 109.47319 * 89.99575 * 12 10 8 14 14 H 1.48501 * 109.47214 * 209.99703 * 12 10 8 15 15 H 1.48499 * 109.47170 * 329.99846 * 12 10 8 16 16 C 1.34776 * 119.99565 * 84.54291 * 7 6 5 17 17 O 1.21293 * 120.00150 * 0.02562 * 16 7 6 18 18 C 1.50706 * 119.99843 * 179.97438 * 16 7 6 19 19 C 1.53000 * 109.47058 * 180.02562 * 18 16 7 20 20 N 1.46495 * 109.46916 * 180.02562 * 19 18 16 21 21 C 1.46498 * 120.00223 * 270.00097 * 20 19 18 22 22 C 1.39170 * 120.00075 * 90.00110 * 20 19 18 23 23 C 1.39470 * 120.86577 * 179.97438 * 22 20 19 24 24 C 1.37896 * 119.06864 * 179.97438 * 23 22 20 25 25 N 1.32001 * 120.84037 * 0.27794 * 24 23 22 26 26 C 1.31995 * 121.90847 * 359.43036 * 25 24 23 27 27 C 1.37901 * 120.84171 * 0.56906 * 26 25 24 28 28 H 1.09007 * 109.46624 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46927 * 299.99405 * 1 2 3 30 30 H 1.08993 * 109.47070 * 60.00209 * 1 2 3 31 31 H 1.09006 * 109.46805 * 60.00658 * 5 3 2 32 32 H 1.08994 * 109.47457 * 300.00272 * 5 3 2 33 33 H 1.09000 * 109.46990 * 60.00591 * 6 5 3 34 34 H 1.08994 * 109.47408 * 300.00541 * 6 5 3 35 35 H 0.96994 * 119.99916 * 180.02562 * 11 10 8 36 36 H 1.08996 * 109.46620 * 59.99886 * 18 16 7 37 37 H 1.09003 * 109.46994 * 300.00073 * 18 16 7 38 38 H 1.09005 * 109.47030 * 60.00174 * 19 18 16 39 39 H 1.08994 * 109.47120 * 300.00121 * 19 18 16 40 40 H 1.08999 * 109.47353 * 270.00684 * 21 20 19 41 41 H 1.09003 * 109.47367 * 30.00000 * 21 20 19 42 42 H 1.09004 * 109.47601 * 149.99961 * 21 20 19 43 43 H 1.08000 * 120.47132 * 0.02562 * 23 22 20 44 44 H 1.08001 * 119.57903 * 179.97438 * 24 23 22 45 45 H 1.07995 * 119.58073 * 180.29086 * 26 25 24 46 46 H 1.08001 * 120.46092 * 179.74534 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0001 2.7421 -0.0002 7 7 5.4631 2.8189 -0.0002 8 6 6.1417 2.9681 1.1815 9 1 7.1090 2.5053 1.3109 10 6 5.5852 3.7147 2.2128 11 7 4.6659 4.6161 1.9495 12 14 6.1439 3.4374 3.9736 13 1 7.2890 4.3330 4.2765 14 1 5.0233 3.7356 4.9013 15 1 6.5636 2.0230 4.1428 16 6 6.1418 2.7427 -1.1622 17 8 5.5413 2.6111 -2.2078 18 6 7.6467 2.8222 -1.1623 19 6 8.1631 2.7117 -2.5983 20 7 9.6260 2.7884 -2.5984 21 6 10.2915 4.0879 -2.7193 22 6 10.3837 1.6267 -2.4837 23 6 11.7775 1.6787 -2.4823 24 6 12.4916 0.5048 -2.3660 25 7 11.8726 -0.6565 -2.2626 26 6 10.5557 -0.7469 -2.2545 27 6 9.7691 0.3802 -2.3666 28 1 -0.3633 -1.0278 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 3.9563 0.7807 -0.8893 32 1 3.9557 0.7810 0.8907 33 1 3.6100 3.2368 0.8894 34 1 3.6107 3.2357 -0.8905 35 1 4.2777 5.1375 2.6693 36 1 8.0537 2.0059 -0.5656 37 1 7.9603 3.7752 -0.7362 38 1 7.7560 3.5283 -3.1947 39 1 7.8495 1.7589 -3.0248 40 1 10.4615 4.3125 -3.7722 41 1 9.6611 4.8611 -2.2801 42 1 11.2469 4.0571 -2.1954 43 1 12.2903 2.6251 -2.5702 44 1 13.5712 0.5354 -2.3644 45 1 10.0884 -1.7162 -2.1634 46 1 8.6921 0.2987 -2.3634 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871342295.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:15 Heat of formation + Delta-G solvation = -72.724341 kcal Electronic energy + Delta-G solvation = -28909.720755 eV Core-core repulsion = 24800.113456 eV Total energy + Delta-G solvation = -4109.607298 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.14287 -40.06557 -38.78083 -36.96991 -36.20053 -35.05048 -32.20988 -31.85599 -31.16229 -30.84123 -29.82136 -27.59751 -26.50558 -25.13597 -24.48118 -23.08693 -22.50357 -20.89479 -20.19809 -19.17951 -17.66175 -17.47288 -16.84307 -16.36811 -16.25942 -16.17843 -15.76637 -15.38169 -14.84442 -14.82751 -14.55231 -14.17542 -14.07629 -13.98281 -13.59417 -13.49838 -13.32216 -13.17372 -12.59519 -12.46250 -12.25293 -12.09693 -11.93654 -11.88941 -11.61174 -11.34040 -11.17740 -11.07754 -10.80668 -10.57523 -10.56124 -10.50180 -10.37912 -10.13604 -10.04265 -9.29691 -9.25789 -9.02640 -8.63636 -7.73284 -7.53261 -6.51457 -4.20178 1.34367 1.69367 2.63232 2.99419 3.03157 3.09983 3.14842 3.17805 3.73638 4.00913 4.06958 4.63704 4.64843 4.83379 4.87132 5.01432 5.21135 5.22470 5.26924 5.28243 5.35398 5.40072 5.41755 5.60096 5.60721 5.63961 5.71162 5.76516 5.84236 5.88832 5.94117 6.05608 6.08271 6.22695 6.25685 6.34679 6.52559 6.69405 6.78650 6.81820 7.22727 7.24863 7.36542 7.44465 7.72964 8.14126 8.21408 8.25766 8.92642 9.32731 9.75846 10.49860 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010164 B = 0.003240 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2754.210980 B = 8639.240684 C = 9823.875300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.366 6.366 3 C 0.466 3.534 4 O -0.505 6.505 5 C -0.125 4.125 6 C 0.127 3.873 7 N -0.434 5.434 8 C -0.349 4.349 9 H 0.093 0.907 10 C 0.046 3.954 11 N -0.850 5.850 12 Si 0.910 3.090 13 H -0.276 1.276 14 H -0.281 1.281 15 H -0.267 1.267 16 C 0.470 3.530 17 O -0.607 6.607 18 C -0.135 4.135 19 C 0.136 3.864 20 N -0.617 5.617 21 C 0.089 3.911 22 C 0.257 3.743 23 C -0.258 4.258 24 C 0.133 3.867 25 N -0.536 5.536 26 C 0.135 3.865 27 C -0.248 4.248 28 H 0.096 0.904 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.098 0.902 32 H 0.103 0.897 33 H 0.118 0.882 34 H 0.064 0.936 35 H 0.273 0.727 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.050 0.950 41 H 0.073 0.927 42 H 0.068 0.932 43 H 0.129 0.871 44 H 0.148 0.852 45 H 0.151 0.849 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.621 -5.344 -4.375 8.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.283 6.283 3 C 0.309 3.691 4 O -0.392 6.392 5 C -0.164 4.164 6 C 0.003 3.997 7 N -0.151 5.151 8 C -0.476 4.476 9 H 0.110 0.890 10 C -0.161 4.161 11 N -0.485 5.485 12 Si 0.736 3.264 13 H -0.201 1.201 14 H -0.206 1.206 15 H -0.191 1.191 16 C 0.259 3.741 17 O -0.494 6.494 18 C -0.176 4.176 19 C 0.013 3.987 20 N -0.325 5.325 21 C -0.054 4.054 22 C 0.144 3.856 23 C -0.283 4.283 24 C -0.023 4.023 25 N -0.250 5.250 26 C -0.020 4.020 27 C -0.273 4.273 28 H 0.114 0.886 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.117 0.883 32 H 0.122 0.878 33 H 0.136 0.864 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.100 0.900 37 H 0.106 0.894 38 H 0.100 0.900 39 H 0.099 0.901 40 H 0.068 0.932 41 H 0.092 0.908 42 H 0.086 0.914 43 H 0.147 0.853 44 H 0.165 0.835 45 H 0.168 0.832 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 5.325 -5.507 -4.713 8.994 hybrid contribution -0.586 0.917 1.096 1.545 sum 4.739 -4.590 -3.616 7.523 Atomic orbital electron populations 1.23171 0.77343 1.03051 1.02337 1.86540 1.22766 1.34392 1.84649 1.24062 0.92380 0.80901 0.71745 1.90652 1.67265 1.36227 1.45042 1.21898 0.85919 1.03354 1.05204 1.21198 0.82133 0.90913 1.05503 1.43433 1.04507 1.61867 1.05331 1.19416 1.05293 1.32458 0.90468 0.88951 1.25358 0.96774 0.93484 1.00534 1.69931 1.27125 1.17919 1.33510 0.86206 0.78563 0.79295 0.82334 1.20127 1.20580 1.19142 1.20293 0.89172 0.80979 0.83626 1.90548 1.70813 1.56392 1.31689 1.21730 0.94466 1.04266 0.97155 1.21332 0.76699 1.03864 0.96807 1.46643 1.05524 1.03740 1.76586 1.21703 0.98247 0.84453 1.01000 1.18118 0.90810 0.86976 0.89658 1.21602 0.92531 1.00513 1.13682 1.22383 0.99759 0.87301 0.92879 1.67696 1.11006 1.28185 1.18069 1.22437 0.89146 0.97876 0.92556 1.21763 1.01732 0.91986 1.11829 0.88599 0.92167 0.92167 0.88330 0.87846 0.86444 0.91800 0.91703 0.90030 0.89357 0.89963 0.90052 0.93180 0.90824 0.91363 0.85304 0.83464 0.83212 0.84723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.43 10.56 101.05 1.07 1.49 16 2 O -0.37 -5.91 10.57 -39.26 -0.41 -6.32 16 3 C 0.47 8.84 7.96 36.01 0.29 9.13 16 4 O -0.51 -10.88 15.73 -18.75 -0.29 -11.17 16 5 C -0.12 -2.43 6.10 -27.88 -0.17 -2.60 16 6 C 0.13 2.94 4.19 -4.04 -0.02 2.92 16 7 N -0.43 -10.14 2.56 -114.81 -0.29 -10.44 16 8 C -0.35 -8.22 8.70 -14.94 -0.13 -8.35 16 9 H 0.09 2.08 6.97 -52.48 -0.37 1.71 16 10 C 0.05 1.10 4.92 -17.47 -0.09 1.01 16 11 N -0.85 -21.72 11.34 55.50 0.63 -21.09 16 12 Si 0.91 18.59 29.61 -169.99 -5.03 13.56 16 13 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 14 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 15 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 16 C 0.47 10.38 7.60 -10.98 -0.08 10.30 16 17 O -0.61 -14.50 15.65 5.55 0.09 -14.42 16 18 C -0.14 -2.42 4.68 -27.88 -0.13 -2.55 16 19 C 0.14 2.10 4.48 -4.04 -0.02 2.08 16 20 N -0.62 -8.30 2.99 -179.43 -0.54 -8.83 16 21 C 0.09 0.95 10.22 59.85 0.61 1.56 16 22 C 0.26 3.53 6.58 -83.61 -0.55 2.98 16 23 C -0.26 -3.13 9.27 -39.25 -0.36 -3.50 16 24 C 0.13 1.63 11.17 -17.60 -0.20 1.43 16 25 N -0.54 -7.53 10.36 -13.35 -0.14 -7.66 16 26 C 0.14 1.80 11.17 -17.60 -0.20 1.60 16 27 C -0.25 -3.44 9.27 -39.25 -0.36 -3.80 16 28 H 0.10 0.84 8.14 -51.92 -0.42 0.41 16 29 H 0.06 0.73 8.13 -51.93 -0.42 0.30 16 30 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 31 H 0.10 1.87 8.14 -51.93 -0.42 1.44 16 32 H 0.10 1.90 8.14 -51.93 -0.42 1.47 16 33 H 0.12 2.99 5.31 -51.93 -0.28 2.71 16 34 H 0.06 1.60 7.55 -51.93 -0.39 1.21 16 35 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 36 H 0.08 1.45 7.64 -51.93 -0.40 1.05 16 37 H 0.09 1.63 8.10 -51.93 -0.42 1.20 16 38 H 0.08 1.30 8.03 -51.93 -0.42 0.88 16 39 H 0.08 1.29 6.22 -51.93 -0.32 0.97 16 40 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.07 0.78 8.07 -51.93 -0.42 0.36 16 42 H 0.07 0.63 6.26 -51.93 -0.33 0.31 16 43 H 0.13 1.28 6.28 -52.49 -0.33 0.95 16 44 H 0.15 1.36 8.06 -52.49 -0.42 0.94 16 45 H 0.15 1.62 8.06 -52.49 -0.42 1.20 16 46 H 0.13 1.86 6.28 -52.49 -0.33 1.53 16 LS Contribution 386.93 15.07 5.83 5.83 Total: -1.00 -30.09 386.93 -7.02 -37.11 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: -6.51 Total: 9.73 kcal Atomic # 6 Polarization: 14.05 SS G_CDS: -0.34 Total: 13.71 kcal Atomic # 7 Polarization: -47.69 SS G_CDS: -0.34 Total: -48.03 kcal Atomic # 8 Polarization: -31.29 SS G_CDS: -0.62 Total: -31.91 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.03 Total: 13.56 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -30.09 -7.02 -37.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871342295.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.616 kcal (2) G-P(sol) polarization free energy of solvation -30.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds