Wall clock time and date at job start Tue Mar 31 2020 18:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34231 * 116.99743 * 2 1 4 4 O 1.20823 * 120.00101 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99799 * 179.97438 * 3 2 1 6 6 C 1.52998 * 109.47050 * 179.97438 * 5 3 2 7 7 N 1.46504 * 109.47238 * 180.02562 * 6 5 3 8 8 C 1.37093 * 120.00159 * 264.54314 * 7 6 5 9 9 H 1.08007 * 119.99611 * 146.01528 * 8 7 6 10 10 C 1.38948 * 120.00203 * 326.01819 * 8 7 6 11 11 N 1.31414 * 119.99919 * 337.79994 * 10 8 7 12 12 Si 1.86796 * 120.00218 * 157.80803 * 10 8 7 13 13 H 1.48496 * 109.47319 * 89.99575 * 12 10 8 14 14 H 1.48501 * 109.47214 * 209.99703 * 12 10 8 15 15 H 1.48499 * 109.47170 * 329.99846 * 12 10 8 16 16 C 1.34776 * 119.99565 * 84.54291 * 7 6 5 17 17 O 1.21293 * 120.00150 * 0.02562 * 16 7 6 18 18 C 1.50706 * 119.99843 * 179.97438 * 16 7 6 19 19 C 1.53000 * 109.47058 * 180.02562 * 18 16 7 20 20 N 1.46495 * 109.46916 * 180.02562 * 19 18 16 21 21 C 1.46498 * 120.00223 * 270.00097 * 20 19 18 22 22 C 1.39170 * 120.00075 * 90.00110 * 20 19 18 23 23 C 1.39470 * 120.86577 * 179.97438 * 22 20 19 24 24 C 1.37896 * 119.06864 * 179.97438 * 23 22 20 25 25 N 1.32001 * 120.84037 * 0.27794 * 24 23 22 26 26 C 1.31995 * 121.90847 * 359.43036 * 25 24 23 27 27 C 1.37901 * 120.84171 * 0.56906 * 26 25 24 28 28 H 1.09007 * 109.46624 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46927 * 299.99405 * 1 2 3 30 30 H 1.08993 * 109.47070 * 60.00209 * 1 2 3 31 31 H 1.09006 * 109.46805 * 60.00658 * 5 3 2 32 32 H 1.08994 * 109.47457 * 300.00272 * 5 3 2 33 33 H 1.09000 * 109.46990 * 60.00591 * 6 5 3 34 34 H 1.08994 * 109.47408 * 300.00541 * 6 5 3 35 35 H 0.96994 * 119.99916 * 180.02562 * 11 10 8 36 36 H 1.08996 * 109.46620 * 59.99886 * 18 16 7 37 37 H 1.09003 * 109.46994 * 300.00073 * 18 16 7 38 38 H 1.09005 * 109.47030 * 60.00174 * 19 18 16 39 39 H 1.08994 * 109.47120 * 300.00121 * 19 18 16 40 40 H 1.08999 * 109.47353 * 270.00684 * 21 20 19 41 41 H 1.09003 * 109.47367 * 30.00000 * 21 20 19 42 42 H 1.09004 * 109.47601 * 149.99961 * 21 20 19 43 43 H 1.08000 * 120.47132 * 0.02562 * 23 22 20 44 44 H 1.08001 * 119.57903 * 179.97438 * 24 23 22 45 45 H 1.07995 * 119.58073 * 180.29086 * 26 25 24 46 46 H 1.08001 * 120.46092 * 179.74534 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0001 2.7421 -0.0002 7 7 5.4631 2.8189 -0.0002 8 6 6.1417 2.9681 1.1815 9 1 7.1090 2.5053 1.3109 10 6 5.5852 3.7147 2.2128 11 7 4.6659 4.6161 1.9495 12 14 6.1439 3.4374 3.9736 13 1 7.2890 4.3330 4.2765 14 1 5.0233 3.7356 4.9013 15 1 6.5636 2.0230 4.1428 16 6 6.1418 2.7427 -1.1622 17 8 5.5413 2.6111 -2.2078 18 6 7.6467 2.8222 -1.1623 19 6 8.1631 2.7117 -2.5983 20 7 9.6260 2.7884 -2.5984 21 6 10.2915 4.0879 -2.7193 22 6 10.3837 1.6267 -2.4837 23 6 11.7775 1.6787 -2.4823 24 6 12.4916 0.5048 -2.3660 25 7 11.8726 -0.6565 -2.2626 26 6 10.5557 -0.7469 -2.2545 27 6 9.7691 0.3802 -2.3666 28 1 -0.3633 -1.0278 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 3.9563 0.7807 -0.8893 32 1 3.9557 0.7810 0.8907 33 1 3.6100 3.2368 0.8894 34 1 3.6107 3.2357 -0.8905 35 1 4.2777 5.1375 2.6693 36 1 8.0537 2.0059 -0.5656 37 1 7.9603 3.7752 -0.7362 38 1 7.7560 3.5283 -3.1947 39 1 7.8495 1.7589 -3.0248 40 1 10.4615 4.3125 -3.7722 41 1 9.6611 4.8611 -2.2801 42 1 11.2469 4.0571 -2.1954 43 1 12.2903 2.6251 -2.5702 44 1 13.5712 0.5354 -2.3644 45 1 10.0884 -1.7162 -2.1634 46 1 8.6921 0.2987 -2.3634 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871342295.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:15 Heat of formation + Delta-G solvation = -89.360977 kcal Electronic energy + Delta-G solvation = -28910.442173 eV Core-core repulsion = 24800.113456 eV Total energy + Delta-G solvation = -4110.328717 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.59177 -41.14971 -40.45153 -38.10999 -37.63077 -36.82845 -33.90823 -33.33508 -32.35270 -32.11473 -30.98818 -28.78008 -27.59268 -26.93256 -25.79152 -24.37265 -23.65348 -22.06322 -21.64024 -20.96661 -19.06258 -18.75117 -18.33317 -17.90226 -17.64223 -17.56576 -17.13647 -16.43621 -16.39902 -16.24985 -16.00522 -15.46658 -15.29684 -15.19473 -14.91629 -14.59906 -14.50343 -14.26296 -14.13024 -13.96103 -13.78386 -13.42768 -13.19533 -13.07917 -12.95333 -12.93870 -12.73564 -12.55309 -12.18859 -12.13709 -11.96341 -11.89895 -11.80878 -11.62834 -11.45908 -11.05945 -10.44148 -10.28439 -9.98934 -9.59189 -8.57727 -8.34134 -6.08373 0.38044 0.67946 1.11117 1.39635 1.48603 1.58549 1.64464 1.96498 2.05306 2.31763 2.98556 3.06088 3.10642 3.76273 3.81839 3.86861 3.97413 4.08211 4.15103 4.19290 4.23884 4.29600 4.30560 4.37369 4.42710 4.44152 4.58333 4.64932 4.66937 4.69874 4.70706 4.83768 4.90203 4.96114 5.02697 5.04576 5.12736 5.21931 5.25372 5.37829 5.49908 5.82767 5.92004 6.19378 6.35964 6.43027 6.68029 7.08746 7.28528 7.52409 7.95290 8.67976 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010164 B = 0.003240 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2754.210980 B = 8639.240684 C = 9823.875300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.362 6.362 3 C 0.473 3.527 4 O -0.537 6.537 5 C -0.115 4.115 6 C 0.132 3.868 7 N -0.446 5.446 8 C -0.354 4.354 9 H 0.104 0.896 10 C 0.005 3.995 11 N -0.888 5.888 12 Si 0.975 3.025 13 H -0.271 1.271 14 H -0.286 1.286 15 H -0.257 1.257 16 C 0.462 3.538 17 O -0.629 6.629 18 C -0.119 4.119 19 C 0.149 3.851 20 N -0.619 5.619 21 C 0.084 3.916 22 C 0.241 3.759 23 C -0.254 4.254 24 C 0.128 3.872 25 N -0.557 5.557 26 C 0.129 3.871 27 C -0.263 4.263 28 H 0.138 0.862 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.104 0.896 32 H 0.117 0.883 33 H 0.096 0.904 34 H 0.033 0.967 35 H 0.272 0.728 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.064 0.936 41 H 0.070 0.930 42 H 0.086 0.914 43 H 0.154 0.846 44 H 0.178 0.822 45 H 0.167 0.833 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.315 -6.507 -3.862 10.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.279 6.279 3 C 0.317 3.683 4 O -0.427 6.427 5 C -0.153 4.153 6 C 0.008 3.992 7 N -0.164 5.164 8 C -0.482 4.482 9 H 0.122 0.878 10 C -0.198 4.198 11 N -0.524 5.524 12 Si 0.798 3.202 13 H -0.197 1.197 14 H -0.211 1.211 15 H -0.180 1.180 16 C 0.252 3.748 17 O -0.518 6.518 18 C -0.160 4.160 19 C 0.025 3.975 20 N -0.328 5.328 21 C -0.058 4.058 22 C 0.129 3.871 23 C -0.279 4.279 24 C -0.027 4.027 25 N -0.270 5.270 26 C -0.027 4.027 27 C -0.288 4.288 28 H 0.156 0.844 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.122 0.878 32 H 0.135 0.865 33 H 0.114 0.886 34 H 0.052 0.948 35 H 0.081 0.919 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.095 0.905 39 H 0.093 0.907 40 H 0.082 0.918 41 H 0.089 0.911 42 H 0.104 0.896 43 H 0.171 0.829 44 H 0.195 0.805 45 H 0.184 0.816 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 7.046 -6.697 -4.209 10.593 hybrid contribution -1.150 1.248 0.866 1.905 sum 5.897 -5.449 -3.342 8.697 Atomic orbital electron populations 1.23585 0.74765 1.05891 1.02442 1.86509 1.25166 1.32340 1.83842 1.23839 0.92124 0.81287 0.71045 1.90642 1.67848 1.37486 1.46723 1.21669 0.86831 1.00773 1.06066 1.20944 0.82468 0.92981 1.02829 1.43655 1.04544 1.62251 1.05936 1.19727 1.05718 1.32210 0.90503 0.87837 1.26152 0.96745 0.92947 1.03992 1.70051 1.28737 1.19164 1.34488 0.85214 0.77847 0.79580 0.77526 1.19674 1.21139 1.18037 1.20995 0.90889 0.79968 0.82913 1.90523 1.71767 1.57138 1.32353 1.21616 0.91272 1.04040 0.99037 1.21027 0.78320 1.03299 0.94807 1.46618 1.04487 1.04784 1.76871 1.21889 0.98697 0.82968 1.02215 1.18365 0.91706 0.86878 0.90187 1.21864 0.91762 1.01670 1.12581 1.22920 1.01247 0.86793 0.91788 1.67749 1.11245 1.29281 1.18741 1.22728 0.89184 0.98536 0.92204 1.21824 1.01567 0.92651 1.12782 0.84373 0.92114 0.92136 0.87783 0.86476 0.88626 0.94793 0.91863 0.89604 0.89699 0.90529 0.90668 0.91785 0.91114 0.89573 0.82863 0.80508 0.81565 0.85411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 10.56 113.37 1.20 1.79 16 2 O -0.36 -11.25 10.57 -51.43 -0.54 -11.79 16 3 C 0.47 18.03 7.96 71.24 0.57 18.60 16 4 O -0.54 -23.73 15.73 21.97 0.35 -23.38 16 5 C -0.11 -4.51 6.10 29.85 0.18 -4.33 16 6 C 0.13 6.37 4.19 86.38 0.36 6.73 16 7 N -0.45 -21.26 2.56 -635.53 -1.63 -22.89 16 8 C -0.35 -16.69 8.70 84.04 0.73 -15.96 16 9 H 0.10 4.56 6.97 -2.91 -0.02 4.54 16 10 C 0.01 0.26 4.92 84.93 0.42 0.68 16 11 N -0.89 -46.46 11.34 21.66 0.25 -46.22 16 12 Si 0.97 37.74 29.61 68.60 2.03 39.78 16 13 H -0.27 -10.27 7.11 99.48 0.71 -9.57 16 14 H -0.29 -11.23 7.11 99.48 0.71 -10.52 16 15 H -0.26 -9.43 7.11 99.48 0.71 -8.73 16 16 C 0.46 20.76 7.60 87.66 0.67 21.43 16 17 O -0.63 -30.81 15.65 -3.07 -0.05 -30.86 16 18 C -0.12 -4.24 4.68 29.85 0.14 -4.10 16 19 C 0.15 4.58 4.48 86.38 0.39 4.97 16 20 N -0.62 -15.84 2.99 -721.59 -2.16 -18.00 16 21 C 0.08 1.62 10.22 127.77 1.31 2.93 16 22 C 0.24 6.25 6.58 38.57 0.25 6.50 16 23 C -0.25 -5.50 9.27 22.49 0.21 -5.30 16 24 C 0.13 2.81 11.17 84.59 0.95 3.75 16 25 N -0.56 -14.66 10.36 -196.15 -2.03 -16.69 16 26 C 0.13 3.28 11.17 84.59 0.95 4.22 16 27 C -0.26 -7.10 9.27 22.49 0.21 -6.89 16 28 H 0.14 1.96 8.14 -2.38 -0.02 1.94 16 29 H 0.06 1.39 8.13 -2.39 -0.02 1.37 16 30 H 0.06 1.39 8.13 -2.39 -0.02 1.37 16 31 H 0.10 3.97 8.14 -2.38 -0.02 3.95 16 32 H 0.12 4.26 8.14 -2.39 -0.02 4.24 16 33 H 0.10 5.07 5.31 -2.39 -0.01 5.06 16 34 H 0.03 1.79 7.55 -2.39 -0.02 1.77 16 35 H 0.27 13.55 8.31 -92.71 -0.77 12.78 16 36 H 0.09 3.00 7.64 -2.39 -0.02 2.98 16 37 H 0.08 3.10 8.10 -2.39 -0.02 3.08 16 38 H 0.08 2.43 8.03 -2.38 -0.02 2.41 16 39 H 0.08 2.40 6.22 -2.39 -0.01 2.39 16 40 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.07 1.40 8.07 -2.39 -0.02 1.38 16 42 H 0.09 1.34 6.26 -2.39 -0.01 1.33 16 43 H 0.15 2.48 6.28 -2.91 -0.02 2.46 16 44 H 0.18 2.67 8.06 -2.91 -0.02 2.64 16 45 H 0.17 3.44 8.06 -2.91 -0.02 3.42 16 46 H 0.13 3.54 6.28 -2.91 -0.02 3.53 16 Total: -1.00 -65.89 386.93 5.72 -60.16 By element: Atomic # 1 Polarization: 33.87 SS G_CDS: 0.99 Total: 34.87 kcal Atomic # 6 Polarization: 26.50 SS G_CDS: 8.51 Total: 35.01 kcal Atomic # 7 Polarization: -98.22 SS G_CDS: -5.57 Total: -103.79 kcal Atomic # 8 Polarization: -65.79 SS G_CDS: -0.25 Total: -66.03 kcal Atomic # 14 Polarization: 37.74 SS G_CDS: 2.03 Total: 39.78 kcal Total: -65.89 5.72 -60.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871342295.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.196 kcal (2) G-P(sol) polarization free energy of solvation -65.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds