Wall clock time and date at job start Tue Mar 31 2020 18:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34231 * 116.99831 * 2 1 4 4 O 1.20828 * 120.00044 * 359.97438 * 3 2 1 5 5 C 1.50694 * 119.99945 * 180.02562 * 3 2 1 6 6 C 1.53000 * 109.47465 * 180.02562 * 5 3 2 7 7 N 1.46496 * 109.47376 * 180.02562 * 6 5 3 8 8 C 1.36880 * 119.99805 * 263.78757 * 7 6 5 9 9 H 1.07996 * 119.99766 * 137.53197 * 8 7 6 10 10 C 1.39047 * 119.99844 * 317.53552 * 8 7 6 11 11 N 1.31363 * 120.00480 * 347.82302 * 10 8 7 12 12 Si 1.86804 * 119.99944 * 167.82161 * 10 8 7 13 13 H 1.48503 * 109.46853 * 89.99677 * 12 10 8 14 14 H 1.48499 * 109.47149 * 209.99910 * 12 10 8 15 15 H 1.48497 * 109.46955 * 330.00223 * 12 10 8 16 16 C 1.34775 * 120.00526 * 83.79100 * 7 6 5 17 17 O 1.21599 * 119.99524 * 3.80286 * 16 7 6 18 18 C 1.47717 * 120.00159 * 183.80392 * 16 7 6 19 19 C 1.40089 * 120.56516 * 331.23435 * 18 16 7 20 20 C 1.38335 * 118.28146 * 179.75437 * 19 18 16 21 21 C 1.38371 * 119.30962 * 0.24565 * 20 19 18 22 22 C 1.50707 * 119.45224 * 180.02562 * 21 20 19 23 23 N 1.46897 * 109.47084 * 94.99937 * 22 21 20 24 24 C 1.46901 * 110.99885 * 66.04890 * 23 22 21 25 25 C 1.46900 * 111.00106 * 190.00352 * 23 22 21 26 26 N 1.31928 * 121.09580 * 0.02562 * 21 20 19 27 27 C 1.31684 * 121.88735 * 359.97438 * 26 21 20 28 28 H 1.09003 * 109.46866 * 299.99762 * 1 2 3 29 29 H 1.09000 * 109.47146 * 59.99989 * 1 2 3 30 30 H 1.09003 * 109.46583 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47366 * 59.99942 * 5 3 2 32 32 H 1.09001 * 109.47337 * 300.00380 * 5 3 2 33 33 H 1.08998 * 109.46918 * 59.99616 * 6 5 3 34 34 H 1.09006 * 109.46463 * 300.00215 * 6 5 3 35 35 H 0.96995 * 120.00429 * 180.02562 * 11 10 8 36 36 H 1.08000 * 120.85840 * 0.02567 * 19 18 16 37 37 H 1.08005 * 120.34502 * 180.23308 * 20 19 18 38 38 H 1.08992 * 109.47297 * 215.00258 * 22 21 20 39 39 H 1.09002 * 109.46896 * 335.00351 * 22 21 20 40 40 H 1.08993 * 109.46975 * 59.99813 * 24 23 22 41 41 H 1.08998 * 109.47122 * 179.97438 * 24 23 22 42 42 H 1.09001 * 109.46998 * 299.99591 * 24 23 22 43 43 H 1.08998 * 109.47348 * 59.99811 * 25 23 22 44 44 H 1.08996 * 109.47591 * 180.02562 * 25 23 22 45 45 H 1.09008 * 109.46734 * 300.00203 * 25 23 22 46 46 H 1.07999 * 119.72073 * 180.02562 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7421 0.0002 7 7 5.4631 2.8188 -0.0010 8 6 6.1408 2.9818 1.1770 9 1 7.0394 2.4134 1.3661 10 6 5.6722 3.8792 2.1302 11 7 4.7300 4.7389 1.8159 12 14 6.3825 3.8622 3.8579 13 1 7.5458 4.7829 3.9239 14 1 5.3452 4.3050 4.8239 15 1 6.8212 2.4851 4.1991 16 6 6.1418 2.7289 -1.1619 17 8 5.5380 2.6537 -2.2148 18 6 7.6189 2.7217 -1.1553 19 6 8.3300 3.3755 -0.1407 20 6 9.7122 3.3344 -0.1779 21 6 10.3423 2.6598 -1.2087 22 6 11.8480 2.6124 -1.2520 23 7 12.3173 1.3730 -0.6183 24 6 11.9081 0.1962 -1.3965 25 6 13.7737 1.3979 -0.4279 26 7 9.6468 2.0573 -2.1542 27 6 8.3301 2.0679 -2.1630 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 3.9557 0.7810 -0.8908 32 1 3.9564 0.7806 0.8891 33 1 3.6107 3.2356 0.8906 34 1 3.6100 3.2368 -0.8894 35 1 4.4034 5.3651 2.4808 36 1 7.8123 3.8945 0.6524 37 1 10.2935 3.8239 0.5895 38 1 12.1827 2.6396 -2.2889 39 1 12.2540 3.4706 -0.7165 40 1 12.3316 0.2583 -2.3989 41 1 12.2689 -0.7075 -0.9054 42 1 10.8206 0.1647 -1.4628 43 1 14.0425 2.2400 0.2098 44 1 14.0947 0.4685 0.0425 45 1 14.2648 1.5035 -1.3954 46 1 7.7959 1.5628 -2.9541 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871344058.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:33 Heat of formation + Delta-G solvation = -63.425144 kcal Electronic energy + Delta-G solvation = -29093.586092 eV Core-core repulsion = 24984.382037 eV Total energy + Delta-G solvation = -4109.204055 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.17902 -39.96390 -38.45361 -36.93989 -36.19664 -35.13423 -32.45460 -32.01333 -31.45817 -30.44667 -27.68396 -27.53596 -27.17012 -25.35608 -24.18689 -22.79378 -22.56053 -21.10657 -20.36132 -19.42740 -17.87119 -17.16598 -16.37414 -16.25790 -16.13884 -16.01079 -15.61314 -15.52313 -14.91413 -14.74175 -14.45392 -14.09344 -13.84472 -13.77957 -13.49039 -13.06695 -12.78462 -12.72510 -12.50126 -12.27006 -12.20312 -12.13130 -12.00486 -11.77724 -11.65085 -11.54141 -11.33167 -11.25529 -11.12006 -10.84047 -10.57089 -10.52765 -10.18502 -10.05964 -9.31649 -9.24326 -9.08427 -8.66980 -8.47477 -8.29662 -7.68079 -6.54916 -4.33497 1.33905 1.87799 2.63243 2.98926 3.02654 3.11594 3.14278 3.62424 3.93096 4.05912 4.49297 4.52382 4.68917 4.84448 4.96065 5.13315 5.21750 5.26285 5.28727 5.30162 5.40347 5.47174 5.60419 5.62001 5.65288 5.67463 5.73084 5.74274 5.79674 5.83752 5.95911 6.11581 6.20902 6.21769 6.25218 6.68183 6.72943 6.83034 6.91100 6.96656 6.98915 7.15270 7.25051 7.32746 7.72561 8.12907 8.16308 8.39990 8.82851 9.24639 9.68335 10.45505 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012119 B = 0.003323 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2309.859620 B = 8423.427582 C = 9727.733967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.366 6.366 3 C 0.467 3.533 4 O -0.504 6.504 5 C -0.127 4.127 6 C 0.131 3.869 7 N -0.427 5.427 8 C -0.353 4.353 9 H 0.097 0.903 10 C 0.046 3.954 11 N -0.849 5.849 12 Si 0.912 3.088 13 H -0.271 1.271 14 H -0.279 1.279 15 H -0.265 1.265 16 C 0.516 3.484 17 O -0.594 6.594 18 C -0.146 4.146 19 C -0.035 4.035 20 C -0.173 4.173 21 C 0.127 3.873 22 C 0.108 3.892 23 N -0.542 5.542 24 C 0.026 3.974 25 C 0.026 3.974 26 N -0.495 5.495 27 C 0.134 3.866 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.096 0.904 31 H 0.099 0.901 32 H 0.104 0.896 33 H 0.116 0.884 34 H 0.066 0.934 35 H 0.275 0.725 36 H 0.180 0.820 37 H 0.130 0.870 38 H 0.049 0.951 39 H 0.087 0.913 40 H 0.026 0.974 41 H 0.061 0.939 42 H 0.079 0.921 43 H 0.068 0.932 44 H 0.068 0.932 45 H 0.024 0.976 46 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.265 -6.475 -0.048 9.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.283 6.283 3 C 0.310 3.690 4 O -0.391 6.391 5 C -0.165 4.165 6 C 0.007 3.993 7 N -0.144 5.144 8 C -0.481 4.481 9 H 0.114 0.886 10 C -0.162 4.162 11 N -0.484 5.484 12 Si 0.737 3.263 13 H -0.197 1.197 14 H -0.204 1.204 15 H -0.189 1.189 16 C 0.305 3.695 17 O -0.480 6.480 18 C -0.151 4.151 19 C -0.060 4.060 20 C -0.194 4.194 21 C -0.011 4.011 22 C -0.020 4.020 23 N -0.266 5.266 24 C -0.122 4.122 25 C -0.122 4.122 26 N -0.205 5.205 27 C -0.025 4.025 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.114 0.886 31 H 0.117 0.883 32 H 0.122 0.878 33 H 0.134 0.866 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.197 0.803 37 H 0.148 0.852 38 H 0.068 0.932 39 H 0.105 0.895 40 H 0.044 0.956 41 H 0.079 0.921 42 H 0.098 0.902 43 H 0.087 0.913 44 H 0.086 0.914 45 H 0.042 0.958 46 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 6.813 -6.500 -0.643 9.438 hybrid contribution -0.062 0.529 0.872 1.022 sum 6.751 -5.971 0.229 9.016 Atomic orbital electron populations 1.23173 0.77313 1.03052 1.02351 1.86540 1.22784 1.34377 1.84646 1.24022 0.92328 0.80912 0.71774 1.90657 1.67251 1.36206 1.45010 1.21917 0.86052 1.03299 1.05279 1.21184 0.81864 0.90753 1.05489 1.43196 1.04539 1.61522 1.05143 1.19538 1.11622 1.23038 0.93885 0.88554 1.25516 0.96528 0.93969 1.00186 1.69820 1.26702 1.16733 1.35114 0.86162 0.79049 0.79325 0.81791 1.19669 1.20436 1.18930 1.18196 0.86336 0.80831 0.84092 1.90649 1.69921 1.56186 1.31253 1.21014 0.95570 1.01392 0.97154 1.23110 0.92996 0.93033 0.96892 1.21916 0.95434 1.02505 0.99509 1.20966 0.95220 0.93918 0.90983 1.20941 0.89966 0.92858 0.98243 1.61956 1.12451 1.02517 1.49687 1.22412 1.02795 0.91980 0.94981 1.22378 0.87163 1.02733 0.99974 1.67428 1.08262 1.19134 1.25647 1.22748 0.88844 0.94747 0.96119 0.92150 0.92156 0.88605 0.88320 0.87771 0.86604 0.91512 0.91395 0.80333 0.85231 0.93244 0.89471 0.95574 0.92069 0.90233 0.91342 0.91364 0.95767 0.82617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.43 10.56 101.05 1.07 1.49 16 2 O -0.37 -5.87 10.57 -39.26 -0.41 -6.29 16 3 C 0.47 8.78 7.96 36.00 0.29 9.06 16 4 O -0.50 -10.78 15.73 -18.75 -0.29 -11.07 16 5 C -0.13 -2.44 6.09 -27.89 -0.17 -2.61 16 6 C 0.13 3.02 4.15 -4.04 -0.02 3.00 16 7 N -0.43 -10.05 2.50 -115.93 -0.29 -10.34 16 8 C -0.35 -8.07 6.08 -15.00 -0.09 -8.16 16 9 H 0.10 2.12 6.13 -52.49 -0.32 1.80 16 10 C 0.05 1.06 5.01 -17.45 -0.09 0.98 16 11 N -0.85 -21.08 11.35 55.50 0.63 -20.45 16 12 Si 0.91 17.83 29.57 -169.99 -5.03 12.80 16 13 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 14 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 15 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 16 C 0.52 12.17 7.41 -12.39 -0.09 12.08 16 17 O -0.59 -15.19 16.36 5.28 0.09 -15.10 16 18 C -0.15 -3.03 5.61 -104.82 -0.59 -3.61 16 19 C -0.03 -0.66 7.90 -38.85 -0.31 -0.97 16 20 C -0.17 -2.84 9.70 -39.50 -0.38 -3.23 16 21 C 0.13 2.04 5.70 -82.50 -0.47 1.57 16 22 C 0.11 1.39 5.27 -4.97 -0.03 1.36 16 23 N -0.54 -6.80 5.01 -252.72 -1.27 -8.07 16 24 C 0.03 0.33 9.25 60.07 0.56 0.89 16 25 C 0.03 0.24 9.57 60.06 0.57 0.82 16 26 N -0.49 -8.67 8.82 -9.11 -0.08 -8.75 16 27 C 0.13 2.53 10.77 -17.11 -0.18 2.35 16 28 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 29 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 30 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.10 1.87 8.14 -51.93 -0.42 1.45 16 32 H 0.10 1.88 8.14 -51.93 -0.42 1.45 16 33 H 0.12 2.89 5.61 -51.93 -0.29 2.60 16 34 H 0.07 1.67 7.52 -51.93 -0.39 1.28 16 35 H 0.28 6.50 8.31 -40.82 -0.34 6.16 16 36 H 0.18 3.65 5.13 -52.49 -0.27 3.38 16 37 H 0.13 1.79 8.06 -52.48 -0.42 1.37 16 38 H 0.05 0.63 8.12 -51.93 -0.42 0.21 16 39 H 0.09 0.95 7.96 -51.93 -0.41 0.54 16 40 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.06 0.67 8.12 -51.93 -0.42 0.25 16 42 H 0.08 1.18 6.34 -51.93 -0.33 0.85 16 43 H 0.07 0.57 8.12 -51.93 -0.42 0.15 16 44 H 0.07 0.58 8.12 -51.93 -0.42 0.16 16 45 H 0.02 0.21 8.14 -51.92 -0.42 -0.21 16 46 H 0.16 2.83 7.91 -52.49 -0.42 2.41 16 LS Contribution 384.67 15.07 5.80 5.80 Total: -1.00 -28.98 384.67 -7.43 -36.41 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -6.63 Total: 10.04 kcal Atomic # 6 Polarization: 14.95 SS G_CDS: 0.07 Total: 15.01 kcal Atomic # 7 Polarization: -46.60 SS G_CDS: -1.01 Total: -47.60 kcal Atomic # 8 Polarization: -31.84 SS G_CDS: -0.62 Total: -32.46 kcal Atomic # 14 Polarization: 17.83 SS G_CDS: -5.03 Total: 12.80 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -28.98 -7.43 -36.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871344058.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.016 kcal (2) G-P(sol) polarization free energy of solvation -28.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds