Wall clock time and date at job start Tue Mar 31 2020 18:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34231 * 116.99831 * 2 1 4 4 O 1.20828 * 120.00044 * 359.97438 * 3 2 1 5 5 C 1.50694 * 119.99945 * 180.02562 * 3 2 1 6 6 C 1.53000 * 109.47465 * 180.02562 * 5 3 2 7 7 N 1.46496 * 109.47376 * 180.02562 * 6 5 3 8 8 C 1.36880 * 119.99805 * 263.78757 * 7 6 5 9 9 H 1.07996 * 119.99766 * 137.53197 * 8 7 6 10 10 C 1.39047 * 119.99844 * 317.53552 * 8 7 6 11 11 N 1.31363 * 120.00480 * 347.82302 * 10 8 7 12 12 Si 1.86804 * 119.99944 * 167.82161 * 10 8 7 13 13 H 1.48503 * 109.46853 * 89.99677 * 12 10 8 14 14 H 1.48499 * 109.47149 * 209.99910 * 12 10 8 15 15 H 1.48497 * 109.46955 * 330.00223 * 12 10 8 16 16 C 1.34775 * 120.00526 * 83.79100 * 7 6 5 17 17 O 1.21599 * 119.99524 * 3.80286 * 16 7 6 18 18 C 1.47717 * 120.00159 * 183.80392 * 16 7 6 19 19 C 1.40089 * 120.56516 * 331.23435 * 18 16 7 20 20 C 1.38335 * 118.28146 * 179.75437 * 19 18 16 21 21 C 1.38371 * 119.30962 * 0.24565 * 20 19 18 22 22 C 1.50707 * 119.45224 * 180.02562 * 21 20 19 23 23 N 1.46897 * 109.47084 * 94.99937 * 22 21 20 24 24 C 1.46901 * 110.99885 * 66.04890 * 23 22 21 25 25 C 1.46900 * 111.00106 * 190.00352 * 23 22 21 26 26 N 1.31928 * 121.09580 * 0.02562 * 21 20 19 27 27 C 1.31684 * 121.88735 * 359.97438 * 26 21 20 28 28 H 1.09003 * 109.46866 * 299.99762 * 1 2 3 29 29 H 1.09000 * 109.47146 * 59.99989 * 1 2 3 30 30 H 1.09003 * 109.46583 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47366 * 59.99942 * 5 3 2 32 32 H 1.09001 * 109.47337 * 300.00380 * 5 3 2 33 33 H 1.08998 * 109.46918 * 59.99616 * 6 5 3 34 34 H 1.09006 * 109.46463 * 300.00215 * 6 5 3 35 35 H 0.96995 * 120.00429 * 180.02562 * 11 10 8 36 36 H 1.08000 * 120.85840 * 0.02567 * 19 18 16 37 37 H 1.08005 * 120.34502 * 180.23308 * 20 19 18 38 38 H 1.08992 * 109.47297 * 215.00258 * 22 21 20 39 39 H 1.09002 * 109.46896 * 335.00351 * 22 21 20 40 40 H 1.08993 * 109.46975 * 59.99813 * 24 23 22 41 41 H 1.08998 * 109.47122 * 179.97438 * 24 23 22 42 42 H 1.09001 * 109.46998 * 299.99591 * 24 23 22 43 43 H 1.08998 * 109.47348 * 59.99811 * 25 23 22 44 44 H 1.08996 * 109.47591 * 180.02562 * 25 23 22 45 45 H 1.09008 * 109.46734 * 300.00203 * 25 23 22 46 46 H 1.07999 * 119.72073 * 180.02562 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7421 0.0002 7 7 5.4631 2.8188 -0.0010 8 6 6.1408 2.9818 1.1770 9 1 7.0394 2.4134 1.3661 10 6 5.6722 3.8792 2.1302 11 7 4.7300 4.7389 1.8159 12 14 6.3825 3.8622 3.8579 13 1 7.5458 4.7829 3.9239 14 1 5.3452 4.3050 4.8239 15 1 6.8212 2.4851 4.1991 16 6 6.1418 2.7289 -1.1619 17 8 5.5380 2.6537 -2.2148 18 6 7.6189 2.7217 -1.1553 19 6 8.3300 3.3755 -0.1407 20 6 9.7122 3.3344 -0.1779 21 6 10.3423 2.6598 -1.2087 22 6 11.8480 2.6124 -1.2520 23 7 12.3173 1.3730 -0.6183 24 6 11.9081 0.1962 -1.3965 25 6 13.7737 1.3979 -0.4279 26 7 9.6468 2.0573 -2.1542 27 6 8.3301 2.0679 -2.1630 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 3.9557 0.7810 -0.8908 32 1 3.9564 0.7806 0.8891 33 1 3.6107 3.2356 0.8906 34 1 3.6100 3.2368 -0.8894 35 1 4.4034 5.3651 2.4808 36 1 7.8123 3.8945 0.6524 37 1 10.2935 3.8239 0.5895 38 1 12.1827 2.6396 -2.2889 39 1 12.2540 3.4706 -0.7165 40 1 12.3316 0.2583 -2.3989 41 1 12.2689 -0.7075 -0.9054 42 1 10.8206 0.1647 -1.4628 43 1 14.0425 2.2400 0.2098 44 1 14.0947 0.4685 0.0425 45 1 14.2648 1.5035 -1.3954 46 1 7.7959 1.5628 -2.9541 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871344058.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:32 Heat of formation + Delta-G solvation = -81.445592 kcal Electronic energy + Delta-G solvation = -29094.367517 eV Core-core repulsion = 24984.382037 eV Total energy + Delta-G solvation = -4109.985480 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.70606 -41.41132 -40.07494 -37.98881 -37.64847 -36.95533 -34.06366 -33.70161 -32.80517 -32.03997 -28.87269 -28.46380 -28.31262 -27.09728 -25.69895 -24.12030 -23.96788 -22.27036 -21.84898 -21.18376 -19.55751 -18.67954 -17.94080 -17.71448 -17.56666 -17.33639 -17.05949 -16.54898 -16.39313 -16.16751 -15.81293 -15.52413 -15.34189 -15.15129 -14.91871 -14.41649 -14.27540 -14.17933 -13.83563 -13.76408 -13.60625 -13.21511 -13.18299 -13.09118 -12.83125 -12.80102 -12.62177 -12.57637 -12.43959 -12.40618 -12.12253 -11.96514 -11.80957 -11.62560 -11.07367 -10.83030 -10.56821 -10.26022 -9.92346 -9.52664 -9.27365 -8.32730 -6.17133 -0.11533 0.43350 1.11185 1.45399 1.51404 1.61437 1.64508 2.02729 2.30927 2.75275 2.87514 3.06758 3.23315 3.45606 3.80383 3.81265 4.03768 4.14167 4.17621 4.20262 4.26908 4.30488 4.31218 4.37064 4.46452 4.52892 4.57053 4.61856 4.68209 4.77060 4.78568 4.84072 4.85620 4.94717 5.09178 5.12864 5.24280 5.31210 5.33717 5.44758 5.51025 5.78785 5.91818 6.00245 6.13772 6.33312 6.68085 6.99643 7.02380 7.42511 7.86853 8.69123 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012119 B = 0.003323 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2309.859620 B = 8423.427582 C = 9727.733967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.362 6.362 3 C 0.474 3.526 4 O -0.536 6.536 5 C -0.117 4.117 6 C 0.138 3.862 7 N -0.435 5.435 8 C -0.354 4.354 9 H 0.107 0.893 10 C 0.009 3.991 11 N -0.889 5.889 12 Si 0.976 3.024 13 H -0.260 1.260 14 H -0.286 1.286 15 H -0.256 1.256 16 C 0.506 3.494 17 O -0.627 6.627 18 C -0.171 4.171 19 C -0.040 4.040 20 C -0.165 4.165 21 C 0.134 3.866 22 C 0.110 3.890 23 N -0.555 5.555 24 C 0.029 3.971 25 C 0.026 3.974 26 N -0.496 5.496 27 C 0.133 3.867 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.138 0.862 31 H 0.102 0.898 32 H 0.120 0.880 33 H 0.097 0.903 34 H 0.034 0.966 35 H 0.275 0.725 36 H 0.166 0.834 37 H 0.163 0.837 38 H 0.052 0.948 39 H 0.114 0.886 40 H 0.029 0.971 41 H 0.075 0.925 42 H 0.052 0.948 43 H 0.082 0.918 44 H 0.076 0.924 45 H 0.032 0.968 46 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.893 -7.604 1.324 12.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.279 6.279 3 C 0.318 3.682 4 O -0.426 6.426 5 C -0.155 4.155 6 C 0.013 3.987 7 N -0.151 5.151 8 C -0.482 4.482 9 H 0.124 0.876 10 C -0.195 4.195 11 N -0.525 5.525 12 Si 0.799 3.201 13 H -0.185 1.185 14 H -0.212 1.212 15 H -0.180 1.180 16 C 0.296 3.704 17 O -0.515 6.515 18 C -0.176 4.176 19 C -0.066 4.066 20 C -0.185 4.185 21 C -0.004 4.004 22 C -0.018 4.018 23 N -0.280 5.280 24 C -0.119 4.119 25 C -0.121 4.121 26 N -0.205 5.205 27 C -0.025 4.025 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.156 0.844 31 H 0.120 0.880 32 H 0.138 0.862 33 H 0.115 0.885 34 H 0.053 0.947 35 H 0.085 0.915 36 H 0.183 0.817 37 H 0.181 0.819 38 H 0.071 0.929 39 H 0.132 0.868 40 H 0.047 0.953 41 H 0.093 0.907 42 H 0.071 0.929 43 H 0.100 0.900 44 H 0.095 0.905 45 H 0.050 0.950 46 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 9.459 -7.663 0.732 12.196 hybrid contribution -0.843 0.837 0.390 1.250 sum 8.617 -6.827 1.122 11.050 Atomic orbital electron populations 1.23590 0.74720 1.05893 1.02471 1.86508 1.25197 1.32318 1.83845 1.23768 0.92013 0.81304 0.71078 1.90647 1.67814 1.37453 1.46678 1.21684 0.87041 1.00663 1.06126 1.20938 0.82015 0.92870 1.02830 1.43394 1.04649 1.61406 1.05636 1.19790 1.11815 1.23068 0.93485 0.87617 1.26289 0.96521 0.93206 1.03508 1.69954 1.28423 1.17820 1.36301 0.85178 0.78308 0.79750 0.76913 1.18489 1.21203 1.17990 1.18714 0.87776 0.80273 0.83604 1.90603 1.70972 1.57739 1.32206 1.20855 0.93850 1.03878 0.99048 1.22943 0.94310 0.93143 0.96225 1.22205 0.94222 1.01863 1.00177 1.21618 0.97069 0.91925 0.89834 1.21034 0.87347 0.94282 0.99137 1.61954 1.14612 1.01991 1.49438 1.22348 1.01071 0.92917 0.95568 1.22451 0.84993 1.03903 1.00784 1.67537 1.07335 1.19332 1.26326 1.22726 0.89505 0.94615 0.95644 0.92010 0.92183 0.84382 0.88027 0.86195 0.88482 0.94748 0.91531 0.81721 0.81931 0.92946 0.86776 0.95251 0.90656 0.92925 0.89962 0.90478 0.94978 0.82742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 10.56 113.37 1.20 1.79 16 2 O -0.36 -11.32 10.57 -51.43 -0.54 -11.86 16 3 C 0.47 18.16 7.96 71.23 0.57 18.73 16 4 O -0.54 -23.72 15.73 21.96 0.35 -23.38 16 5 C -0.12 -4.63 6.09 29.85 0.18 -4.45 16 6 C 0.14 6.69 4.15 86.38 0.36 7.05 16 7 N -0.43 -21.26 2.50 -638.95 -1.60 -22.86 16 8 C -0.35 -16.42 6.08 84.10 0.51 -15.91 16 9 H 0.11 4.64 6.13 -2.91 -0.02 4.62 16 10 C 0.01 0.43 5.01 84.96 0.43 0.85 16 11 N -0.89 -45.57 11.35 21.68 0.25 -45.32 16 12 Si 0.98 36.09 29.57 68.60 2.03 38.12 16 13 H -0.26 -9.12 7.11 99.48 0.71 -8.41 16 14 H -0.29 -10.87 7.11 99.48 0.71 -10.16 16 15 H -0.26 -9.04 7.11 99.48 0.71 -8.34 16 16 C 0.51 24.89 7.41 86.75 0.64 25.53 16 17 O -0.63 -33.76 16.36 -4.03 -0.07 -33.82 16 18 C -0.17 -7.23 5.61 -20.00 -0.11 -7.34 16 19 C -0.04 -1.53 7.90 22.74 0.18 -1.35 16 20 C -0.16 -5.02 9.70 22.32 0.22 -4.80 16 21 C 0.13 3.99 5.70 42.58 0.24 4.23 16 22 C 0.11 2.45 5.27 85.56 0.45 2.90 16 23 N -0.56 -12.08 5.01 -953.48 -4.78 -16.86 16 24 C 0.03 0.67 9.25 127.69 1.18 1.85 16 25 C 0.03 0.39 9.57 127.69 1.22 1.61 16 26 N -0.50 -16.89 8.82 -182.74 -1.61 -18.50 16 27 C 0.13 5.10 10.77 85.04 0.92 6.02 16 28 H 0.06 1.41 8.13 -2.39 -0.02 1.39 16 29 H 0.06 1.39 8.13 -2.39 -0.02 1.37 16 30 H 0.14 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.10 3.98 8.14 -2.39 -0.02 3.96 16 32 H 0.12 4.35 8.14 -2.39 -0.02 4.33 16 33 H 0.10 5.11 5.61 -2.39 -0.01 5.09 16 34 H 0.03 1.85 7.52 -2.38 -0.02 1.83 16 35 H 0.27 13.39 8.31 -92.71 -0.77 12.62 16 36 H 0.17 6.72 5.13 -2.91 -0.01 6.71 16 37 H 0.16 3.85 8.06 -2.91 -0.02 3.82 16 38 H 0.05 1.16 8.12 -2.39 -0.02 1.14 16 39 H 0.11 1.95 7.96 -2.39 -0.02 1.93 16 40 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.07 1.47 8.12 -2.39 -0.02 1.45 16 42 H 0.05 1.49 6.34 -2.39 -0.02 1.47 16 43 H 0.08 1.01 8.12 -2.39 -0.02 1.00 16 44 H 0.08 1.03 8.12 -2.39 -0.02 1.01 16 45 H 0.03 0.44 8.14 -2.38 -0.02 0.42 16 46 H 0.16 5.81 7.91 -2.91 -0.02 5.79 16 Total: -1.00 -65.35 384.67 3.20 -62.15 By element: Atomic # 1 Polarization: 34.62 SS G_CDS: 0.99 Total: 35.61 kcal Atomic # 6 Polarization: 28.54 SS G_CDS: 8.18 Total: 36.72 kcal Atomic # 7 Polarization: -95.80 SS G_CDS: -7.74 Total: -103.54 kcal Atomic # 8 Polarization: -68.79 SS G_CDS: -0.26 Total: -69.06 kcal Atomic # 14 Polarization: 36.09 SS G_CDS: 2.03 Total: 38.12 kcal Total: -65.35 3.20 -62.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871344058.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.293 kcal (2) G-P(sol) polarization free energy of solvation -65.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds