Wall clock time and date at job start Tue Mar 31 2020 19:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 113.99712 * 2 1 4 4 C 1.53004 * 109.52570 * 304.82792 * 3 2 1 5 5 O 1.42902 * 109.46894 * 296.13140 * 4 3 2 6 6 C 1.53045 * 109.49734 * 64.90626 * 3 2 1 7 7 C 1.53040 * 109.53480 * 58.59017 * 6 3 2 8 8 C 1.52758 * 109.38598 * 61.23411 * 7 6 3 9 9 N 1.46921 * 109.01222 * 305.59261 * 8 7 6 10 10 C 1.34787 * 120.62865 * 233.58782 * 9 8 7 11 11 O 1.21572 * 119.99857 * 174.84863 * 10 9 8 12 12 N 1.34777 * 119.99901 * 355.11749 * 10 9 8 13 13 C 1.39451 * 120.00110 * 185.70680 * 12 10 9 14 14 C 1.38645 * 119.64809 * 18.45616 * 13 12 10 15 15 C 1.40816 * 118.67733 * 179.71985 * 14 13 12 16 16 C 1.41541 * 120.99949 * 180.25205 * 15 14 13 17 17 H 1.08001 * 120.00519 * 212.50195 * 16 15 14 18 18 C 1.40036 * 120.00212 * 32.50716 * 16 15 14 19 19 N 1.30741 * 119.99467 * 6.54352 * 18 16 15 20 20 Si 1.86795 * 120.00042 * 186.54666 * 18 16 15 21 21 H 1.48504 * 109.47148 * 60.00010 * 20 18 16 22 22 H 1.48501 * 109.47225 * 179.97438 * 20 18 16 23 23 H 1.48491 * 109.47344 * 299.99821 * 20 18 16 24 24 C 1.41168 * 118.00577 * 0.53632 * 15 14 13 25 25 C 1.36598 * 119.12184 * 359.73756 * 24 15 14 26 26 N 1.32062 * 121.26059 * 359.97438 * 25 24 15 27 27 C 1.46920 * 118.74129 * 53.30488 * 9 8 7 28 28 H 1.08996 * 109.46995 * 185.37718 * 1 2 3 29 29 H 1.09005 * 109.47024 * 305.37276 * 1 2 3 30 30 H 1.08998 * 109.47476 * 65.37520 * 1 2 3 31 31 H 1.08999 * 109.46805 * 56.12436 * 4 3 2 32 32 H 1.08995 * 109.47379 * 176.12991 * 4 3 2 33 33 H 0.96703 * 113.99933 * 180.02562 * 5 4 3 34 34 H 1.09001 * 109.45449 * 178.60410 * 6 3 2 35 35 H 1.08997 * 109.45829 * 298.57931 * 6 3 2 36 36 H 1.09005 * 109.49534 * 181.31630 * 7 6 3 37 37 H 1.09002 * 109.49629 * 301.37857 * 7 6 3 38 38 H 1.09004 * 109.51333 * 185.70247 * 8 7 6 39 39 H 1.09004 * 109.43131 * 65.42515 * 8 7 6 40 40 H 0.96999 * 119.99505 * 5.71606 * 12 10 9 41 41 H 1.08008 * 120.65891 * 0.02562 * 14 13 12 42 42 H 0.97004 * 119.99608 * 180.02562 * 19 18 16 43 43 H 1.07998 * 120.43912 * 179.76743 * 24 15 14 44 44 H 1.08004 * 119.36548 * 180.02562 * 25 24 15 45 45 H 1.08997 * 109.58777 * 66.43520 * 27 9 8 46 46 H 1.09001 * 109.58726 * 186.86217 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.4658 2.1076 -1.1837 5 8 1.8725 1.4886 -2.4058 6 6 1.6590 2.0210 1.3065 7 6 2.1746 1.2028 2.4926 8 6 3.6945 1.0801 2.4015 9 7 4.0523 0.5295 1.0872 10 6 4.8374 -0.5618 0.9904 11 8 5.0499 -1.0633 -0.0965 12 7 5.3824 -1.1003 2.0992 13 6 6.2883 -2.1547 1.9894 14 6 6.9169 -2.3955 0.7773 15 6 7.8325 -3.4618 0.6909 16 6 8.5058 -3.7482 -0.5207 17 1 8.7628 -4.7676 -0.7679 18 6 8.8389 -2.7096 -1.3991 19 7 8.6444 -1.4663 -1.0447 20 14 9.5610 -3.1008 -3.0768 21 1 8.5997 -3.9289 -3.8486 22 1 9.8238 -1.8362 -3.8097 23 1 10.8327 -3.8482 -2.9064 24 6 8.0541 -4.2406 1.8473 25 6 7.3833 -3.9305 2.9962 26 7 6.5355 -2.9190 3.0430 27 6 3.5329 1.1873 -0.1195 28 1 -0.3633 -1.0231 0.0963 29 1 -0.3633 0.5949 0.8380 30 1 -0.3634 0.4282 -0.9342 31 1 0.3772 2.1342 -1.1347 32 1 1.8562 3.1244 -1.1440 33 1 1.5625 1.9450 -3.2001 34 1 2.1231 3.0072 1.3165 35 1 0.5769 2.1280 1.3823 36 1 1.9037 1.7011 3.4235 37 1 1.7293 0.2082 2.4695 38 1 4.0538 0.4147 3.1866 39 1 4.1456 2.0653 2.5200 40 1 5.1442 -0.7545 2.9736 41 1 6.7120 -1.7744 -0.0823 42 1 8.8748 -0.7469 -1.6533 43 1 8.7452 -5.0702 1.8242 44 1 7.5502 -4.5234 3.8834 45 1 3.9705 2.1814 -0.2109 46 1 3.7854 0.5926 -0.9974 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871734326.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:58 Heat of formation + Delta-G solvation = -64.649712 kcal Electronic energy + Delta-G solvation = -30313.361757 eV Core-core repulsion = 26204.104601 eV Total energy + Delta-G solvation = -4109.257156 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.63307 -39.34965 -37.86326 -36.44793 -35.89110 -34.30101 -33.50124 -32.42518 -31.23101 -30.36783 -28.44929 -27.11775 -26.10336 -25.75882 -25.13383 -22.32492 -21.99071 -21.25586 -20.13693 -19.16358 -18.24896 -17.55229 -17.28935 -16.66365 -15.92027 -15.83126 -15.53151 -15.19264 -14.96022 -14.80348 -14.14799 -14.11386 -14.02172 -13.78543 -13.61548 -13.04849 -12.97085 -12.85280 -12.74059 -12.64607 -12.39870 -12.16553 -11.98767 -11.54805 -11.28310 -11.18935 -11.09724 -11.03155 -10.78291 -10.49762 -10.30249 -10.23627 -10.05928 -9.61453 -9.58159 -9.17240 -8.86375 -8.34397 -7.95349 -7.70389 -6.84326 -6.55819 -4.40115 2.81163 2.94578 3.02456 3.16550 3.19795 3.34343 3.53301 3.87981 3.99303 4.05585 4.26336 4.50297 4.54997 4.75071 4.83763 4.88620 4.93197 5.02197 5.10452 5.16180 5.31427 5.37071 5.38799 5.54659 5.58497 5.65407 5.67813 5.75135 5.83110 6.00061 6.08026 6.15485 6.60906 6.65045 6.89461 6.93001 7.18235 7.20343 7.30475 7.36784 7.42358 7.64139 7.76475 8.08589 8.29804 8.54827 8.68366 8.95796 9.01603 9.25816 9.66952 10.36038 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012581 B = 0.003847 C = 0.003189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2225.124042 B = 7276.079154 C = 8777.074476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.350 6.350 3 C 0.104 3.896 4 C 0.052 3.948 5 O -0.554 6.554 6 C -0.141 4.141 7 C -0.129 4.129 8 C 0.110 3.890 9 N -0.625 5.625 10 C 0.710 3.290 11 O -0.544 6.544 12 N -0.664 5.664 13 C 0.334 3.666 14 C -0.207 4.207 15 C 0.137 3.863 16 C -0.459 4.459 17 H 0.079 0.921 18 C 0.076 3.924 19 N -0.788 5.788 20 Si 0.914 3.086 21 H -0.264 1.264 22 H -0.278 1.278 23 H -0.266 1.266 24 C -0.282 4.282 25 C 0.116 3.884 26 N -0.602 5.602 27 C 0.152 3.848 28 H 0.083 0.917 29 H 0.039 0.961 30 H 0.040 0.960 31 H 0.051 0.949 32 H 0.055 0.945 33 H 0.377 0.623 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.067 0.933 40 H 0.394 0.606 41 H 0.171 0.829 42 H 0.280 0.720 43 H 0.101 0.899 44 H 0.122 0.878 45 H 0.075 0.925 46 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.743 13.072 2.282 20.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.268 6.268 3 C 0.063 3.937 4 C -0.027 4.027 5 O -0.358 6.358 6 C -0.179 4.179 7 C -0.167 4.167 8 C -0.014 4.014 9 N -0.364 5.364 10 C 0.412 3.588 11 O -0.417 6.417 12 N -0.313 5.313 13 C 0.112 3.888 14 C -0.231 4.231 15 C 0.128 3.872 16 C -0.491 4.491 17 H 0.097 0.903 18 C -0.143 4.143 19 N -0.414 5.414 20 Si 0.739 3.261 21 H -0.188 1.188 22 H -0.203 1.203 23 H -0.191 1.191 24 C -0.306 4.306 25 C -0.038 4.038 26 N -0.323 5.323 27 C 0.028 3.972 28 H 0.102 0.898 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.223 0.777 34 H 0.095 0.905 35 H 0.087 0.913 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.098 0.902 39 H 0.085 0.915 40 H 0.230 0.770 41 H 0.187 0.813 42 H 0.091 0.909 43 H 0.119 0.881 44 H 0.140 0.860 45 H 0.093 0.907 46 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -15.594 12.580 2.590 20.202 hybrid contribution 0.002 0.628 -1.237 1.388 sum -15.592 13.208 1.353 20.479 Atomic orbital electron populations 1.22777 0.82408 1.02639 0.99400 1.88197 1.18514 1.25551 1.94534 1.21994 0.95369 0.84256 0.92100 1.22757 0.98273 0.95884 0.85768 1.86667 1.78662 1.55546 1.14946 1.22037 1.01539 0.99553 0.94796 1.21733 0.95954 1.01558 0.97500 1.21517 0.95087 0.99328 0.85423 1.47082 1.52994 1.29964 1.06343 1.15576 0.78873 0.79987 0.84384 1.90921 1.63095 1.61372 1.26354 1.42326 1.45688 1.35221 1.08027 1.17862 0.90599 0.88427 0.91952 1.22802 0.97936 1.04073 0.98305 1.17808 0.87780 0.89603 0.92001 1.19480 1.33063 0.94655 1.01873 0.90265 1.25902 0.94253 0.94502 0.99600 1.69729 1.35669 0.99856 1.36104 0.86280 0.79837 0.78635 0.81366 1.18828 1.20348 1.19118 1.21689 1.07689 1.06672 0.94591 1.21194 0.93064 0.93106 0.96419 1.66524 1.24173 1.10015 1.31563 1.21261 0.88467 0.98092 0.89385 0.89807 0.94241 0.94179 0.93128 0.92645 0.77694 0.90481 0.91283 0.90566 0.90583 0.90238 0.91462 0.76988 0.81253 0.90895 0.88086 0.86008 0.90711 0.86863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 10.12 101.05 1.02 1.28 16 2 O -0.35 -5.11 9.49 -41.14 -0.39 -5.50 16 3 C 0.10 1.22 0.52 -90.49 -0.05 1.18 16 4 C 0.05 0.48 5.58 37.16 0.21 0.69 16 5 O -0.55 -6.22 12.90 -41.14 -0.53 -6.75 16 6 C -0.14 -1.22 4.44 -26.69 -0.12 -1.34 16 7 C -0.13 -1.23 5.92 -26.83 -0.16 -1.39 16 8 C 0.11 1.29 6.37 -3.94 -0.03 1.26 16 9 N -0.63 -10.21 2.92 -178.77 -0.52 -10.74 16 10 C 0.71 15.54 8.14 -86.91 -0.71 14.84 16 11 O -0.54 -14.47 12.57 5.30 0.07 -14.41 16 12 N -0.66 -14.47 5.33 -15.86 -0.08 -14.55 16 13 C 0.33 8.76 7.52 -154.69 -1.16 7.60 16 14 C -0.21 -6.00 7.44 -38.46 -0.29 -6.29 16 15 C 0.14 3.95 5.54 -106.55 -0.59 3.35 16 16 C -0.46 -13.01 9.11 -37.65 -0.34 -13.35 16 17 H 0.08 2.12 7.86 -52.49 -0.41 1.71 16 18 C 0.08 2.06 5.33 -17.34 -0.09 1.96 16 19 N -0.79 -22.09 10.96 55.55 0.61 -21.48 16 20 Si 0.91 20.07 29.56 -169.99 -5.03 15.05 16 21 H -0.26 -5.77 7.11 56.52 0.40 -5.37 16 22 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 23 H -0.27 -5.66 7.11 56.52 0.40 -5.25 16 24 C -0.28 -7.30 9.85 -39.06 -0.38 -7.69 16 25 C 0.12 2.81 11.10 -18.04 -0.20 2.61 16 26 N -0.60 -15.19 10.36 -12.76 -0.13 -15.32 16 27 C 0.15 2.26 5.12 -3.71 -0.02 2.25 16 28 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.04 0.33 6.34 -51.93 -0.33 0.00 16 30 H 0.04 0.37 6.58 -51.93 -0.34 0.03 16 31 H 0.05 0.38 6.39 -51.93 -0.33 0.05 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.38 2.31 9.12 45.56 0.42 2.72 16 34 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.49 6.61 -51.93 -0.34 0.15 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.08 0.88 7.61 -51.93 -0.40 0.48 16 38 H 0.08 0.92 5.64 -51.93 -0.29 0.63 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.39 7.14 6.31 -40.82 -0.26 6.89 16 41 H 0.17 5.23 3.76 -52.49 -0.20 5.03 16 42 H 0.28 7.23 8.29 -40.82 -0.34 6.89 16 43 H 0.10 2.38 8.06 -52.49 -0.42 1.96 16 44 H 0.12 2.47 8.06 -52.48 -0.42 2.04 16 45 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 46 H 0.11 2.16 6.64 -51.93 -0.34 1.82 16 LS Contribution 363.62 15.07 5.48 5.48 Total: -1.00 -36.88 363.62 -8.78 -45.66 By element: Atomic # 1 Polarization: 20.94 SS G_CDS: -5.35 Total: 15.60 kcal Atomic # 6 Polarization: 9.87 SS G_CDS: -2.91 Total: 6.96 kcal Atomic # 7 Polarization: -61.96 SS G_CDS: -0.13 Total: -62.09 kcal Atomic # 8 Polarization: -25.80 SS G_CDS: -0.85 Total: -26.65 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.03 Total: 15.05 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -36.88 -8.78 -45.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871734326.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.988 kcal (2) G-P(sol) polarization free energy of solvation -36.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds