Wall clock time and date at job start Tue Mar 31 2020 18:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34635 * 117.00290 * 2 1 4 4 O 1.21511 * 119.99580 * 359.97438 * 3 2 1 5 5 N 1.34773 * 120.00124 * 179.97438 * 3 2 1 6 6 C 1.46502 * 120.00044 * 179.97438 * 5 3 2 7 7 N 1.40101 * 120.00115 * 0.02562 * 5 3 2 8 8 C 1.34778 * 119.99554 * 255.00174 * 7 5 3 9 9 O 1.21592 * 119.99490 * 180.02562 * 8 7 5 10 10 N 1.34773 * 120.00568 * 359.97438 * 8 7 5 11 11 C 1.46502 * 120.00306 * 180.02562 * 10 8 7 12 12 H 1.09001 * 109.46581 * 325.00172 * 11 10 8 13 13 C 1.52992 * 109.47005 * 205.00035 * 11 10 8 14 14 C 1.52997 * 109.47482 * 64.99872 * 13 11 10 15 15 C 1.50701 * 109.47212 * 179.97438 * 14 13 11 16 16 H 1.07998 * 120.00129 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99861 * 179.97438 * 15 14 13 18 18 N 1.31510 * 119.99913 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99734 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47432 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.46890 * 120.00210 * 19 17 15 22 22 H 1.48501 * 109.47062 * 240.00257 * 19 17 15 23 23 C 1.50700 * 109.46969 * 84.99373 * 11 10 8 24 24 C 1.38243 * 119.99881 * 39.73243 * 23 11 10 25 25 C 1.38236 * 119.99546 * 179.78181 * 24 23 11 26 26 C 1.38230 * 120.00068 * 0.44148 * 25 24 23 27 27 C 1.38228 * 120.00363 * 359.81337 * 26 25 24 28 28 C 1.38231 * 119.99932 * 359.97297 * 27 26 25 29 29 H 1.08989 * 109.47144 * 300.00241 * 1 2 3 30 30 H 1.09004 * 109.46850 * 60.00402 * 1 2 3 31 31 H 1.08999 * 109.47039 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47141 * 270.00128 * 6 5 3 33 33 H 1.09001 * 109.46873 * 30.00265 * 6 5 3 34 34 H 1.09001 * 109.46800 * 149.99811 * 6 5 3 35 35 H 0.96999 * 119.99844 * 74.99779 * 7 5 3 36 36 H 0.97003 * 119.99459 * 359.97438 * 10 8 7 37 37 H 1.09002 * 109.47103 * 304.99625 * 13 11 10 38 38 H 1.08998 * 109.46862 * 185.00437 * 13 11 10 39 39 H 1.09002 * 109.47153 * 59.99783 * 14 13 11 40 40 H 1.09001 * 109.46832 * 299.99974 * 14 13 11 41 41 H 0.97002 * 119.99768 * 179.97438 * 18 17 15 42 42 H 1.07998 * 119.99681 * 359.97438 * 24 23 11 43 43 H 1.08001 * 119.99400 * 180.27071 * 25 24 23 44 44 H 1.08007 * 119.99792 * 179.83387 * 26 25 24 45 45 H 1.07998 * 120.00222 * 180.02562 * 27 26 25 46 46 H 1.08000 * 120.00023 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4015 2.2186 -0.0005 5 7 3.4092 1.2701 0.0005 6 6 4.0744 2.5754 0.0000 7 7 4.1722 0.0951 0.0005 8 6 4.7921 -0.3058 1.1282 9 8 5.4547 -1.3253 1.1280 10 7 4.6785 0.4239 2.2556 11 6 5.3528 -0.0116 3.4811 12 1 5.3482 -1.1005 3.5310 13 6 4.6189 0.5577 4.6968 14 6 3.2140 -0.0435 4.7723 15 6 2.4914 0.5169 5.9701 16 1 2.9847 1.2308 6.6130 17 6 1.2002 0.1189 6.2446 18 7 0.5994 -0.7501 5.4615 19 14 0.3042 0.8140 7.7290 20 1 1.1929 1.7662 8.4425 21 1 -0.9213 1.5227 7.2803 22 1 -0.0714 -0.2936 8.6440 23 6 6.7756 0.4849 3.4751 24 6 7.0633 1.7527 3.0051 25 6 8.3679 2.2098 3.0038 26 6 9.3859 1.3958 3.4640 27 6 9.0989 0.1261 3.9292 28 6 7.7938 -0.3294 3.9346 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 4.2397 2.8984 -1.0278 33 1 3.4461 3.3035 0.5131 34 1 5.0321 2.4953 0.5143 35 1 4.2543 -0.4299 -0.8110 36 1 4.1507 1.2378 2.2553 37 1 4.5458 1.6412 4.6025 38 1 5.1701 0.3084 5.6035 39 1 3.2871 -1.1270 4.8666 40 1 2.6629 0.2059 3.8655 41 1 -0.3089 -1.0304 5.6548 42 1 6.2684 2.3871 2.6418 43 1 8.5921 3.2019 2.6406 44 1 10.4055 1.7519 3.4605 45 1 9.8942 -0.5097 4.2891 46 1 7.5696 -1.3212 4.2984 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000875617225.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:37 Heat of formation + Delta-G solvation = -48.344627 kcal Electronic energy + Delta-G solvation = -29983.326452 eV Core-core repulsion = 25874.776337 eV Total energy + Delta-G solvation = -4108.550114 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.83459 -39.93179 -38.85617 -37.03977 -36.06420 -35.70722 -33.16191 -31.82221 -31.00999 -30.65078 -30.35648 -28.39585 -26.59866 -26.07694 -23.70318 -22.55111 -22.04002 -21.24357 -20.71417 -20.00183 -19.29199 -18.12438 -17.20578 -16.89017 -16.44274 -16.30016 -16.05720 -15.33789 -15.23996 -14.72790 -14.48892 -14.42032 -14.10533 -14.03644 -13.89620 -13.29015 -13.17165 -12.95039 -12.87983 -12.61973 -12.53361 -12.12946 -12.02975 -11.74507 -11.17198 -10.98965 -10.95971 -10.90946 -10.71219 -10.67743 -10.54461 -10.44468 -9.93372 -9.74978 -9.60450 -9.16401 -9.13828 -8.80089 -8.73327 -8.46116 -8.37334 -6.02323 -4.05299 1.47401 1.53349 1.55808 2.65196 2.74980 3.25631 3.29093 3.36944 3.40555 3.61821 3.99160 4.43599 4.81321 4.98887 5.01168 5.09914 5.13847 5.18050 5.22116 5.26194 5.33622 5.35916 5.47448 5.57975 5.64326 5.66407 5.74334 5.86537 6.03171 6.10136 6.16896 6.30555 6.40257 6.53332 6.60342 6.63764 6.70400 6.84745 6.92598 6.95206 7.15158 7.17807 7.63889 7.74533 7.90928 7.96521 8.28363 8.37451 8.68035 9.01688 9.59127 11.08416 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.006899 B = 0.005361 C = 0.003418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4057.417821 B = 5221.585178 C = 8191.061165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 O -0.356 6.356 3 C 0.658 3.342 4 O -0.555 6.555 5 N -0.404 5.404 6 C 0.099 3.901 7 N -0.527 5.527 8 C 0.717 3.283 9 O -0.573 6.573 10 N -0.718 5.718 11 C 0.197 3.803 12 H 0.096 0.904 13 C -0.113 4.113 14 C 0.026 3.974 15 C -0.522 4.522 16 H 0.055 0.945 17 C 0.059 3.941 18 N -0.891 5.891 19 Si 0.889 3.111 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 C -0.079 4.079 24 C -0.108 4.108 25 C -0.123 4.123 26 C -0.130 4.130 27 C -0.120 4.120 28 C -0.104 4.104 29 H 0.070 0.930 30 H 0.060 0.940 31 H 0.104 0.896 32 H 0.068 0.932 33 H 0.097 0.903 34 H 0.082 0.918 35 H 0.427 0.573 36 H 0.399 0.601 37 H 0.055 0.945 38 H 0.069 0.931 39 H 0.017 0.983 40 H 0.016 0.984 41 H 0.259 0.741 42 H 0.115 0.885 43 H 0.117 0.883 44 H 0.116 0.884 45 H 0.118 0.882 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.402 5.008 -12.126 16.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.268 6.268 3 C 0.413 3.587 4 O -0.441 6.441 5 N -0.240 5.240 6 C -0.042 4.042 7 N -0.286 5.286 8 C 0.417 3.583 9 O -0.447 6.447 10 N -0.372 5.372 11 C 0.092 3.908 12 H 0.114 0.886 13 C -0.151 4.151 14 C -0.011 4.011 15 C -0.560 4.560 16 H 0.074 0.926 17 C -0.143 4.143 18 N -0.531 5.531 19 Si 0.717 3.283 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.210 1.210 23 C -0.080 4.080 24 C -0.126 4.126 25 C -0.142 4.142 26 C -0.148 4.148 27 C -0.139 4.139 28 C -0.123 4.123 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.123 0.877 32 H 0.086 0.914 33 H 0.116 0.884 34 H 0.101 0.899 35 H 0.272 0.728 36 H 0.234 0.766 37 H 0.074 0.926 38 H 0.088 0.912 39 H 0.035 0.965 40 H 0.035 0.965 41 H 0.069 0.931 42 H 0.133 0.867 43 H 0.135 0.865 44 H 0.134 0.866 45 H 0.136 0.864 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 10.406 4.526 -11.953 16.482 hybrid contribution -0.997 0.566 0.423 1.222 sum 9.409 5.093 -11.530 15.729 Atomic orbital electron populations 1.23286 0.73805 1.03971 1.02751 1.86330 1.24535 1.29948 1.86021 1.18152 0.81942 0.82882 0.75745 1.91046 1.62372 1.35214 1.55431 1.45806 0.99524 0.99849 1.78784 1.22078 0.98224 0.80455 1.03408 1.44581 1.51729 1.19037 1.13268 1.15963 0.79383 0.82882 0.80054 1.90994 1.45468 1.25370 1.82894 1.45190 1.54289 1.28571 1.09159 1.20071 0.86632 1.00356 0.83772 0.88608 1.21991 0.99180 0.99927 0.94002 1.19079 0.88823 0.96155 0.97070 1.21249 0.98550 1.25439 1.10772 0.92636 1.25001 0.97611 0.95087 0.96555 1.69984 1.13149 1.32105 1.37817 0.86581 0.79754 0.78948 0.82990 1.19740 1.21055 1.21009 1.20422 0.95970 0.94211 0.97396 1.20873 0.96286 0.95506 0.99943 1.21055 0.93025 0.99487 1.00588 1.21053 0.98843 0.94660 1.00250 1.21081 0.96452 0.96120 1.00201 1.21034 0.92314 0.99620 0.99337 0.91084 0.92092 0.87729 0.91352 0.88402 0.89946 0.72815 0.76624 0.92637 0.91203 0.96480 0.96535 0.93113 0.86734 0.86536 0.86627 0.86355 0.85922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.72 10.56 101.05 1.07 1.79 16 2 O -0.36 -5.54 10.17 -40.31 -0.41 -5.95 16 3 C 0.66 10.17 8.53 54.05 0.46 10.63 16 4 O -0.56 -9.56 15.71 -19.28 -0.30 -9.86 16 5 N -0.40 -5.14 2.71 -72.13 -0.20 -5.34 16 6 C 0.10 0.94 9.84 59.85 0.59 1.53 16 7 N -0.53 -6.97 5.54 27.63 0.15 -6.82 16 8 C 0.72 11.78 8.50 -86.92 -0.74 11.04 16 9 O -0.57 -11.16 16.84 5.28 0.09 -11.07 16 10 N -0.72 -11.59 3.59 -59.81 -0.21 -11.80 16 11 C 0.20 3.37 2.17 -69.08 -0.15 3.22 16 12 H 0.10 1.83 7.44 -51.93 -0.39 1.45 16 13 C -0.11 -2.19 4.67 -26.74 -0.12 -2.32 16 14 C 0.03 0.64 4.86 -27.88 -0.14 0.51 16 15 C -0.52 -14.38 9.11 -34.44 -0.31 -14.70 16 16 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 17 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 18 N -0.89 -26.39 13.29 55.43 0.74 -25.65 16 19 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 20 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 C -0.08 -1.19 4.92 -104.62 -0.51 -1.71 16 24 C -0.11 -1.44 9.33 -39.58 -0.37 -1.81 16 25 C -0.12 -1.46 10.05 -39.59 -0.40 -1.86 16 26 C -0.13 -1.50 10.05 -39.59 -0.40 -1.90 16 27 C -0.12 -1.49 10.05 -39.59 -0.40 -1.89 16 28 C -0.10 -1.50 9.67 -39.58 -0.38 -1.88 16 29 H 0.07 1.02 8.14 -51.94 -0.42 0.60 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.10 0.96 7.42 -51.93 -0.39 0.57 16 34 H 0.08 0.70 7.89 -51.93 -0.41 0.29 16 35 H 0.43 4.86 8.93 -182.60 -1.63 3.22 16 36 H 0.40 6.21 6.88 -40.82 -0.28 5.93 16 37 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.02 0.43 7.75 -51.93 -0.40 0.03 16 41 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 42 H 0.11 1.38 7.71 -52.49 -0.40 0.98 16 43 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 44 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 45 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 46 H 0.12 1.68 8.04 -52.49 -0.42 1.26 16 LS Contribution 395.74 15.07 5.96 5.96 Total: -1.00 -34.56 395.74 -9.19 -43.76 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: -8.09 Total: 8.12 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: -1.90 Total: 2.22 kcal Atomic # 7 Polarization: -50.09 SS G_CDS: 0.48 Total: -49.61 kcal Atomic # 8 Polarization: -26.26 SS G_CDS: -0.62 Total: -26.88 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.56 -9.19 -43.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875617225.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.589 kcal (2) G-P(sol) polarization free energy of solvation -34.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds