Wall clock time and date at job start Tue Mar 31 2020 18:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34635 * 117.00290 * 2 1 4 4 O 1.21511 * 119.99580 * 359.97438 * 3 2 1 5 5 N 1.34773 * 120.00124 * 179.97438 * 3 2 1 6 6 C 1.46502 * 120.00044 * 179.97438 * 5 3 2 7 7 N 1.40101 * 120.00115 * 0.02562 * 5 3 2 8 8 C 1.34778 * 119.99554 * 255.00174 * 7 5 3 9 9 O 1.21592 * 119.99490 * 180.02562 * 8 7 5 10 10 N 1.34773 * 120.00568 * 359.97438 * 8 7 5 11 11 C 1.46502 * 120.00306 * 180.02562 * 10 8 7 12 12 H 1.09001 * 109.46581 * 325.00172 * 11 10 8 13 13 C 1.52992 * 109.47005 * 205.00035 * 11 10 8 14 14 C 1.52997 * 109.47482 * 64.99872 * 13 11 10 15 15 C 1.50701 * 109.47212 * 179.97438 * 14 13 11 16 16 H 1.07998 * 120.00129 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99861 * 179.97438 * 15 14 13 18 18 N 1.31510 * 119.99913 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99734 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47432 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.46890 * 120.00210 * 19 17 15 22 22 H 1.48501 * 109.47062 * 240.00257 * 19 17 15 23 23 C 1.50700 * 109.46969 * 84.99373 * 11 10 8 24 24 C 1.38243 * 119.99881 * 39.73243 * 23 11 10 25 25 C 1.38236 * 119.99546 * 179.78181 * 24 23 11 26 26 C 1.38230 * 120.00068 * 0.44148 * 25 24 23 27 27 C 1.38228 * 120.00363 * 359.81337 * 26 25 24 28 28 C 1.38231 * 119.99932 * 359.97297 * 27 26 25 29 29 H 1.08989 * 109.47144 * 300.00241 * 1 2 3 30 30 H 1.09004 * 109.46850 * 60.00402 * 1 2 3 31 31 H 1.08999 * 109.47039 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47141 * 270.00128 * 6 5 3 33 33 H 1.09001 * 109.46873 * 30.00265 * 6 5 3 34 34 H 1.09001 * 109.46800 * 149.99811 * 6 5 3 35 35 H 0.96999 * 119.99844 * 74.99779 * 7 5 3 36 36 H 0.97003 * 119.99459 * 359.97438 * 10 8 7 37 37 H 1.09002 * 109.47103 * 304.99625 * 13 11 10 38 38 H 1.08998 * 109.46862 * 185.00437 * 13 11 10 39 39 H 1.09002 * 109.47153 * 59.99783 * 14 13 11 40 40 H 1.09001 * 109.46832 * 299.99974 * 14 13 11 41 41 H 0.97002 * 119.99768 * 179.97438 * 18 17 15 42 42 H 1.07998 * 119.99681 * 359.97438 * 24 23 11 43 43 H 1.08001 * 119.99400 * 180.27071 * 25 24 23 44 44 H 1.08007 * 119.99792 * 179.83387 * 26 25 24 45 45 H 1.07998 * 120.00222 * 180.02562 * 27 26 25 46 46 H 1.08000 * 120.00023 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4015 2.2186 -0.0005 5 7 3.4092 1.2701 0.0005 6 6 4.0744 2.5754 0.0000 7 7 4.1722 0.0951 0.0005 8 6 4.7921 -0.3058 1.1282 9 8 5.4547 -1.3253 1.1280 10 7 4.6785 0.4239 2.2556 11 6 5.3528 -0.0116 3.4811 12 1 5.3482 -1.1005 3.5310 13 6 4.6189 0.5577 4.6968 14 6 3.2140 -0.0435 4.7723 15 6 2.4914 0.5169 5.9701 16 1 2.9847 1.2308 6.6130 17 6 1.2002 0.1189 6.2446 18 7 0.5994 -0.7501 5.4615 19 14 0.3042 0.8140 7.7290 20 1 1.1929 1.7662 8.4425 21 1 -0.9213 1.5227 7.2803 22 1 -0.0714 -0.2936 8.6440 23 6 6.7756 0.4849 3.4751 24 6 7.0633 1.7527 3.0051 25 6 8.3679 2.2098 3.0038 26 6 9.3859 1.3958 3.4640 27 6 9.0989 0.1261 3.9292 28 6 7.7938 -0.3294 3.9346 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 4.2397 2.8984 -1.0278 33 1 3.4461 3.3035 0.5131 34 1 5.0321 2.4953 0.5143 35 1 4.2543 -0.4299 -0.8110 36 1 4.1507 1.2378 2.2553 37 1 4.5458 1.6412 4.6025 38 1 5.1701 0.3084 5.6035 39 1 3.2871 -1.1270 4.8666 40 1 2.6629 0.2059 3.8655 41 1 -0.3089 -1.0304 5.6548 42 1 6.2684 2.3871 2.6418 43 1 8.5921 3.2019 2.6406 44 1 10.4055 1.7519 3.4605 45 1 9.8942 -0.5097 4.2891 46 1 7.5696 -1.3212 4.2984 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000875617225.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:36 Heat of formation + Delta-G solvation = -69.756738 kcal Electronic energy + Delta-G solvation = -29984.254951 eV Core-core repulsion = 25874.776337 eV Total energy + Delta-G solvation = -4109.478613 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.04445 -41.18113 -39.94777 -38.20149 -37.34932 -37.11035 -35.14525 -33.16217 -32.31105 -31.81397 -31.60267 -29.42020 -28.23090 -27.14335 -25.38925 -23.60284 -23.20542 -22.61498 -22.15945 -21.31167 -20.48157 -19.39312 -18.55093 -18.34577 -17.73992 -17.64548 -17.34938 -16.58659 -16.52298 -16.34838 -15.85786 -15.61458 -15.21748 -15.17634 -15.04660 -14.66347 -14.58895 -14.19382 -13.97755 -13.88793 -13.76435 -13.41540 -13.36774 -13.10163 -12.90032 -12.54486 -12.44856 -12.18618 -12.11980 -11.95031 -11.88955 -11.84768 -11.62654 -11.46808 -11.20928 -10.98903 -10.56959 -10.28805 -10.08566 -9.73417 -9.54591 -8.19413 -6.30541 0.40571 0.50628 0.58330 1.38738 1.39609 1.44101 1.52062 1.58349 1.93264 2.38848 2.40170 2.97281 3.14036 3.75984 3.82607 3.99256 4.17086 4.20151 4.23277 4.30558 4.33178 4.35040 4.36666 4.45453 4.62832 4.65276 4.69510 4.75660 4.77756 4.95848 4.97361 5.09601 5.18273 5.20817 5.28418 5.34643 5.50031 5.63960 5.66542 5.68126 5.69672 5.79800 5.83795 5.97588 6.18591 6.23082 6.66891 6.86347 7.06928 7.38781 7.40263 8.91889 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.006899 B = 0.005361 C = 0.003418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4057.417821 B = 5221.585178 C = 8191.061165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 O -0.372 6.372 3 C 0.650 3.350 4 O -0.576 6.576 5 N -0.395 5.395 6 C 0.093 3.907 7 N -0.514 5.514 8 C 0.717 3.283 9 O -0.606 6.606 10 N -0.715 5.715 11 C 0.208 3.792 12 H 0.066 0.934 13 C -0.096 4.096 14 C 0.036 3.964 15 C -0.540 4.540 16 H 0.062 0.938 17 C 0.003 3.997 18 N -0.929 5.929 19 Si 0.960 3.040 20 H -0.260 1.260 21 H -0.280 1.280 22 H -0.280 1.280 23 C -0.098 4.098 24 C -0.115 4.115 25 C -0.122 4.122 26 C -0.126 4.126 27 C -0.124 4.124 28 C -0.126 4.126 29 H 0.049 0.951 30 H 0.080 0.920 31 H 0.126 0.874 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.438 0.562 36 H 0.402 0.598 37 H 0.067 0.933 38 H 0.070 0.930 39 H -0.019 1.019 40 H -0.007 1.007 41 H 0.262 0.738 42 H 0.125 0.875 43 H 0.147 0.853 44 H 0.147 0.853 45 H 0.140 0.860 46 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.064 7.086 -12.180 18.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 O -0.285 6.285 3 C 0.405 3.595 4 O -0.464 6.464 5 N -0.231 5.231 6 C -0.046 4.046 7 N -0.272 5.272 8 C 0.417 3.583 9 O -0.483 6.483 10 N -0.369 5.369 11 C 0.103 3.897 12 H 0.085 0.915 13 C -0.134 4.134 14 C -0.001 4.001 15 C -0.578 4.578 16 H 0.080 0.920 17 C -0.195 4.195 18 N -0.569 5.569 19 Si 0.784 3.216 20 H -0.184 1.184 21 H -0.206 1.206 22 H -0.206 1.206 23 C -0.100 4.100 24 C -0.133 4.133 25 C -0.140 4.140 26 C -0.144 4.144 27 C -0.142 4.142 28 C -0.145 4.145 29 H 0.067 0.933 30 H 0.099 0.901 31 H 0.144 0.856 32 H 0.113 0.887 33 H 0.113 0.887 34 H 0.114 0.886 35 H 0.285 0.715 36 H 0.237 0.763 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.000 1.000 40 H 0.012 0.988 41 H 0.070 0.930 42 H 0.143 0.857 43 H 0.165 0.835 44 H 0.165 0.835 45 H 0.158 0.842 46 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 12.082 6.626 -12.027 18.290 hybrid contribution -1.489 -0.095 0.415 1.549 sum 10.593 6.532 -11.612 17.020 Atomic orbital electron populations 1.23477 0.72668 1.05440 1.02627 1.86323 1.25893 1.30302 1.85996 1.18413 0.82704 0.82612 0.75752 1.91023 1.63005 1.35723 1.56631 1.46016 0.98793 1.00428 1.77855 1.22376 0.98321 0.78545 1.05399 1.44342 1.50576 1.19624 1.12699 1.16022 0.79351 0.82403 0.80556 1.90970 1.47062 1.26686 1.83552 1.45089 1.54255 1.28582 1.08927 1.19706 0.88292 0.98544 0.83147 0.91546 1.21729 0.96025 1.00181 0.95461 1.18893 0.91784 0.94109 0.95358 1.21686 0.99088 1.25488 1.11517 0.91979 1.25917 0.98645 0.95356 0.99598 1.70118 1.13598 1.33466 1.39767 0.85480 0.78464 0.78397 0.79209 1.18430 1.20574 1.20598 1.20204 0.94371 0.95582 0.99805 1.21051 0.97690 0.94785 0.99810 1.21427 0.92156 1.00781 0.99605 1.21484 1.00412 0.93961 0.98547 1.21372 0.95947 0.97060 0.99807 1.21164 0.93445 0.99622 1.00254 0.93256 0.90112 0.85579 0.88658 0.88664 0.88591 0.71511 0.76254 0.91398 0.91096 1.00012 0.98824 0.92963 0.85727 0.83519 0.83491 0.84170 0.86671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.35 10.56 113.37 1.20 2.54 16 2 O -0.37 -11.79 10.17 -55.44 -0.56 -12.35 16 3 C 0.65 20.17 8.53 129.79 1.11 21.28 16 4 O -0.58 -19.90 15.71 19.81 0.31 -19.59 16 5 N -0.40 -9.83 2.71 -612.52 -1.66 -11.49 16 6 C 0.09 1.60 9.84 127.77 1.26 2.86 16 7 N -0.51 -13.44 5.54 -184.74 -1.02 -14.46 16 8 C 0.72 23.91 8.50 179.06 1.52 25.43 16 9 O -0.61 -24.25 16.84 -4.00 -0.07 -24.32 16 10 N -0.71 -23.52 3.59 -461.42 -1.66 -25.18 16 11 C 0.21 7.40 2.17 44.24 0.10 7.50 16 12 H 0.07 2.73 7.44 -2.39 -0.02 2.71 16 13 C -0.10 -3.82 4.67 30.59 0.14 -3.67 16 14 C 0.04 1.85 4.86 29.85 0.15 2.00 16 15 C -0.54 -30.25 9.11 25.60 0.23 -30.02 16 16 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 17 C 0.00 0.16 5.46 84.66 0.46 0.63 16 18 N -0.93 -56.48 13.29 21.45 0.28 -56.20 16 19 Si 0.96 44.18 29.54 68.60 2.03 46.21 16 20 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 21 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 22 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 23 C -0.10 -2.96 4.92 -19.86 -0.10 -3.06 16 24 C -0.12 -2.87 9.33 22.27 0.21 -2.66 16 25 C -0.12 -2.47 10.05 22.27 0.22 -2.25 16 26 C -0.13 -2.48 10.05 22.27 0.22 -2.25 16 27 C -0.12 -2.82 10.05 22.27 0.22 -2.59 16 28 C -0.13 -3.60 9.67 22.27 0.22 -3.39 16 29 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 31 H 0.13 2.64 8.14 -2.39 -0.02 2.62 16 32 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.09 1.75 7.42 -2.39 -0.02 1.73 16 34 H 0.10 1.41 7.89 -2.39 -0.02 1.39 16 35 H 0.44 9.74 8.93 -213.32 -1.90 7.83 16 36 H 0.40 12.61 6.88 -92.71 -0.64 11.97 16 37 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 38 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 39 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 40 H -0.01 -0.37 7.75 -2.39 -0.02 -0.39 16 41 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 42 H 0.12 2.74 7.71 -2.91 -0.02 2.72 16 43 H 0.15 2.07 8.06 -2.91 -0.02 2.04 16 44 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16 45 H 0.14 2.47 8.06 -2.91 -0.02 2.45 16 46 H 0.12 3.31 8.04 -2.91 -0.02 3.29 16 Total: -1.00 -76.52 395.74 3.27 -73.24 By element: Atomic # 1 Polarization: 33.32 SS G_CDS: -1.54 Total: 31.78 kcal Atomic # 6 Polarization: 5.20 SS G_CDS: 7.16 Total: 12.36 kcal Atomic # 7 Polarization: -103.27 SS G_CDS: -4.05 Total: -107.32 kcal Atomic # 8 Polarization: -55.95 SS G_CDS: -0.32 Total: -56.27 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -76.52 3.27 -73.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875617225.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.487 kcal (2) G-P(sol) polarization free energy of solvation -76.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds